NO19G01540.1, NO19G01540.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO19G01540.1
Unique NameNO19G01540.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1518
Alignment locationchr19:468348..470384 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr19genomechr19:468348..470384 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO19G01540.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO19G01540NO19G01540Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO19G01540.1NO19G01540.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO19G01540.1.cds1NO19G01540.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G01540.1.cds2NO19G01540.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G01540.1.cds3NO19G01540.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO19G01540.1 ID=NO19G01540.1|Name=NO19G01540.1|organism=Nannochloropsis oceanica|type=mRNA|length=1518bp
ATGGATCTGGGTCTGTTATCTCCATTCACGTCGGTGGCAAGGAAGAGTGT
AAATAGTAGCAGCAGCAGCAGTAGCAAAAGTAGCATGATGGAGGACGAGA
AGAATGTTCAGATGAGAGGAATAGCAGCAAGAGTACAAGATCGCTGTAGC
ACTTCAAGTTCTATTTTCGTCATGAAATGTAGCGTACTGCCGTGCAGTCG
CAGCAGCAGCAGCAGCAGTAGCAGCAGCAGCTGTAATCTGTGGGTGAGTA
AAGAGAGGCTCGCCTTGAAGCCAAACGTGGTGGTCATGGGTGAATTGATG
TTGTGCGGGAACATCATCAGCGGGTATTCTCATCGACAGCATCGAGGGAA
GGAGAGAGGAAGAGAGGGAGAGGAAGAGTGTGTGTTGGCGGGCATGCTAC
GGGCAGCGAGAGAGGGAGGGGTGGGCTGCTTGATCTTACCCAAGGACATG
CAGGAGGATGTCGCGTCTTTCCTGTGTGCCAATGCTGCTGGTGCTGCTAG
TGCTGCTGTTGCTGGTGCTGCTGGAGCTGCTGCTGCTGCTGCTGCTGCTC
CGAAAGCCGATGTCCGTTTTCTCTTTGCTGAGGACATTGTGGACTTGCTT
GGCTTTTTATCGCTGCTCGTGGGGAAACGCCTGAGTTGCACACACGAAGA
GAAAGGATGGACGGGAGAGAGGGAAGAAGGGTGGATTTACGTGGCACCAA
CCCTTCTACCTGTCGATGACGTGTCTGTTTCTTTTCGGAGGGTGGAAGTA
GCTGTCTTGTTAGGTGGAGGACGAGGGCAGTTCCTCGTTACAACCACAGG
CCTTGCCTCCTCCTCCTCCTCCTCCCTCTCCTCTTTTACCTTTTCATCCC
CTTCTTCTTCAGTAACAGCATCACCCATCCTCCTCTCCAGCAACAGCATC
AACCGCACTAGCAGCAGCGGAAGCAATGGCAACATTATCAGTAGTAGGAG
ACGTAGTAATTGTGGAGGAGGAAAAGGAGAAGGCGGAGGAGGAGCCGTCT
GTGCCGCAATAAACGTCGCGCGCGTCCTGCTCCTCAAGAACCAACAACAG
CTCTGTCAGTTCCTTGGTCCCCCCACTATCGACCTCCGCGCAATGTCCTC
CCTCCCTTCTTCCCTCCCTTCCTCCCTCCGGAAGAAGATTGACATTCACG
TTTACATACCCCAGTGCCTCCCCTCTGCTGCTGTGGGGGCATATGCCCTC
CCTGCCTTTCTTGCCCTCGTTGCTGCGTGCTGGCCTGGTCTCCGGGGCTC
CCTCGATGGGACTGGTAGCTTGGGCGAATTGAACGGGATGGGAACCATGT
CACTGCACTCCTGTCGCCTCCCTCCCTCCTTCGTGTCTTCCCTCCCTTCC
TCGGTGATTCGCAAAATGGTCATGCCCAGGGCGCAAGCGTGTGAGCTGGT
GAGGAGCGGGGGCGGGGTGGGAGATAAGTGGCTGCTGGGCAACGGTGTAC
TAGTGGTGGGAGCAGAGAGTATTCTGGACGCGATCCAGTGTTTTTTTCTG
GGGAACGATGGGATCTAG
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protein sequence of NO19G01540.1

>NO19G01540.1-protein ID=NO19G01540.1-protein|Name=NO19G01540.1|organism=Nannochloropsis oceanica|type=polypeptide|length=506bp
MDLGLLSPFTSVARKSVNSSSSSSSKSSMMEDEKNVQMRGIAARVQDRCS
TSSSIFVMKCSVLPCSRSSSSSSSSSSCNLWVSKERLALKPNVVVMGELM
LCGNIISGYSHRQHRGKERGREGEEECVLAGMLRAAREGGVGCLILPKDM
QEDVASFLCANAAGAASAAVAGAAGAAAAAAAAPKADVRFLFAEDIVDLL
GFLSLLVGKRLSCTHEEKGWTGEREEGWIYVAPTLLPVDDVSVSFRRVEV
AVLLGGGRGQFLVTTTGLASSSSSSLSSFTFSSPSSSVTASPILLSSNSI
NRTSSSGSNGNIISSRRRSNCGGGKGEGGGGAVCAAINVARVLLLKNQQQ
LCQFLGPPTIDLRAMSSLPSSLPSSLRKKIDIHVYIPQCLPSAAVGAYAL
PAFLALVAACWPGLRGSLDGTGSLGELNGMGTMSLHSCRLPPSFVSSLPS
SVIRKMVMPRAQACELVRSGGGVGDKWLLGNGVLVVGAESILDAIQCFFL
GNDGI*
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mRNA from alignment at chr19:468348..470384-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO19G01540.1 ID=NO19G01540.1|Name=NO19G01540.1|organism=Nannochloropsis oceanica|type=mRNA|length=2037bp|location=Sequence derived from alignment at chr19:468348..470384- (Nannochloropsis oceanica)
ATGGATCTGGGTCTGTTATCTCCATTCACGTCGGTGGCAAGGAAGAGTGT
AAATAGTAGCAGCAGCAGCAGTAGCAAAAGTAGCATGATGGAGGACGAGA
AGAATGTTCAGATGAGAGGAATAGCAGCAAGAGTACAAGATCGCTGTAGC
ACTTCAAGTTCTATTTTCGTCATGAAATGTAGCGTACTGCCGTGCAGTCG
CAGCAGCAGCAGCAGCAGTAGCAGCAGCAGCTGTAATGTAAGGGTGCAAG
GGCCAGGAGGGAGGGAGGTGGTCACGTTGACAGAAGCAGCTCTCTCTTGG
CAAAGGCGTTTTTGCGGCTGTGGGGGAAGGAAGTCAGAAGGTGGTTCAGA
CTTGGTACGGAGTATGGAGAGTGGTTGATGGAGGGAGGGGAAAAGGAGGG
GGTGGAGGAGGTTGTAATATATTTGGAGCCGTTGAGGAAGGAGGGCTGCT
GGCAGGGGACAGAAGCAGCAGCAGCACTAGCACCAGCGGCAGCAACAGTA
GCAGCACCAGCAGCGACGTTGGGATGTAATGATATGACATGTAGTCGTTC
CCTGTTCTCTTCCATCTCTAGTGAAGCAGCAGCTGCAGTAGGAATGGATG
GAGGGGGATGGGGGTGTCGATCTTCCTTTCGTTGCTACAGCTGTGGGTGA
GTAAAGAGAGGCTCGCCTTGAAGCCAAACGTGGTGGTCATGGGTGAATTG
ATGTTGTGCGGGAACATCATCAGCGGGTATTCTCATCGACAGCATCGAGG
GAAGGAGAGAGGAAGAGAGGGAGAGGAAGAGTGTGTGTTGGCGGGCATGC
TACGGGCAGCGAGAGAGGGAGGGGTGGGCTGCTTGATCTTACCCAAGGAC
ATGCAGGAGGATGTCGCGTCTTTCCTGTGTGCCAATGCTGCTGGTGCTGC
TAGTGCTGCTGTTGCTGGTGCTGCTGGAGCTGCTGCTGCTGCTGCTGCTG
CTCCGAAAGCCGATGTCCGTTTTCTCTTTGCTGAGGACATTGTGGACTTG
CTTGGCTTTGTGAGCGGGTCCTTCTCTTTCTCTTCCTCCATCCCCCCCCC
TCCTACTGGGGTAATCAGGCCTCCTTCCATCCTTCCTCGTTATCTTTTCG
CTCCTCCTCCTCCCCCTCTCCCAAGTTATCGCTGCTCGTGGGGAAACGCC
TGAGTTGCACACACGAAGAGAAAGGATGGACGGGAGAGAGGGAAGAAGGG
TGGATTTACGTGGCACCAACCCTTCTACCTGTCGATGACGTGTCTGTTTC
TTTTCGGAGGGTGGAAGTAGCTGTCTTGTTAGGTGGAGGACGAGGGCAGT
TCCTCGTTACAACCACAGGCCTTGCCTCCTCCTCCTCCTCCTCCCTCTCC
TCTTTTACCTTTTCATCCCCTTCTTCTTCAGTAACAGCATCACCCATCCT
CCTCTCCAGCAACAGCATCAACCGCACTAGCAGCAGCGGAAGCAATGGCA
ACATTATCAGTAGTAGGAGACGTAGTAATTGTGGAGGAGGAAAAGGAGAA
GGCGGAGGAGGAGCCGTCTGTGCCGCAATAAACGTCGCGCGCGTCCTGCT
CCTCAAGAACCAACAACAGCTCTGTCAGTTCCTTGGTCCCCCCACTATCG
ACCTCCGCGCAATGTCCTCCCTCCCTTCTTCCCTCCCTTCCTCCCTCCGG
AAGAAGATTGACATTCACGTTTACATACCCCAGTGCCTCCCCTCTGCTGC
TGTGGGGGCATATGCCCTCCCTGCCTTTCTTGCCCTCGTTGCTGCGTGCT
GGCCTGGTCTCCGGGGCTCCCTCGATGGGACTGGTAGCTTGGGCGAATTG
AACGGGATGGGAACCATGTCACTGCACTCCTGTCGCCTCCCTCCCTCCTT
CGTGTCTTCCCTCCCTTCCTCGGTGATTCGCAAAATGGTCATGCCCAGGG
CGCAAGCGTGTGAGCTGGTGAGGAGCGGGGGCGGGGTGGGAGATAAGTGG
CTGCTGGGCAACGGTGTACTAGTGGTGGGAGCAGAGAGTATTCTGGACGC
GATCCAGTGTTTTTTTCTGGGGAACGATGGGATCTAG
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Coding sequence (CDS) from alignment at chr19:468348..470384-

>NO19G01540.1 ID=NO19G01540.1|Name=NO19G01540.1|organism=Nannochloropsis oceanica|type=CDS|length=1518bp|location=Sequence derived from alignment at chr19:468348..470384- (Nannochloropsis oceanica)
ATGGATCTGGGTCTGTTATCTCCATTCACGTCGGTGGCAAGGAAGAGTGT
AAATAGTAGCAGCAGCAGCAGTAGCAAAAGTAGCATGATGGAGGACGAGA
AGAATGTTCAGATGAGAGGAATAGCAGCAAGAGTACAAGATCGCTGTAGC
ACTTCAAGTTCTATTTTCGTCATGAAATGTAGCGTACTGCCGTGCAGTCG
CAGCAGCAGCAGCAGCAGTAGCAGCAGCAGCTGTAATCTGTGGGTGAGTA
AAGAGAGGCTCGCCTTGAAGCCAAACGTGGTGGTCATGGGTGAATTGATG
TTGTGCGGGAACATCATCAGCGGGTATTCTCATCGACAGCATCGAGGGAA
GGAGAGAGGAAGAGAGGGAGAGGAAGAGTGTGTGTTGGCGGGCATGCTAC
GGGCAGCGAGAGAGGGAGGGGTGGGCTGCTTGATCTTACCCAAGGACATG
CAGGAGGATGTCGCGTCTTTCCTGTGTGCCAATGCTGCTGGTGCTGCTAG
TGCTGCTGTTGCTGGTGCTGCTGGAGCTGCTGCTGCTGCTGCTGCTGCTC
CGAAAGCCGATGTCCGTTTTCTCTTTGCTGAGGACATTGTGGACTTGCTT
GGCTTTTTATCGCTGCTCGTGGGGAAACGCCTGAGTTGCACACACGAAGA
GAAAGGATGGACGGGAGAGAGGGAAGAAGGGTGGATTTACGTGGCACCAA
CCCTTCTACCTGTCGATGACGTGTCTGTTTCTTTTCGGAGGGTGGAAGTA
GCTGTCTTGTTAGGTGGAGGACGAGGGCAGTTCCTCGTTACAACCACAGG
CCTTGCCTCCTCCTCCTCCTCCTCCCTCTCCTCTTTTACCTTTTCATCCC
CTTCTTCTTCAGTAACAGCATCACCCATCCTCCTCTCCAGCAACAGCATC
AACCGCACTAGCAGCAGCGGAAGCAATGGCAACATTATCAGTAGTAGGAG
ACGTAGTAATTGTGGAGGAGGAAAAGGAGAAGGCGGAGGAGGAGCCGTCT
GTGCCGCAATAAACGTCGCGCGCGTCCTGCTCCTCAAGAACCAACAACAG
CTCTGTCAGTTCCTTGGTCCCCCCACTATCGACCTCCGCGCAATGTCCTC
CCTCCCTTCTTCCCTCCCTTCCTCCCTCCGGAAGAAGATTGACATTCACG
TTTACATACCCCAGTGCCTCCCCTCTGCTGCTGTGGGGGCATATGCCCTC
CCTGCCTTTCTTGCCCTCGTTGCTGCGTGCTGGCCTGGTCTCCGGGGCTC
CCTCGATGGGACTGGTAGCTTGGGCGAATTGAACGGGATGGGAACCATGT
CACTGCACTCCTGTCGCCTCCCTCCCTCCTTCGTGTCTTCCCTCCCTTCC
TCGGTGATTCGCAAAATGGTCATGCCCAGGGCGCAAGCGTGTGAGCTGGT
GAGGAGCGGGGGCGGGGTGGGAGATAAGTGGCTGCTGGGCAACGGTGTAC
TAGTGGTGGGAGCAGAGAGTATTCTGGACGCGATCCAGTGTTTTTTTCTG
GGGAACGATGGGATCTAG
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Synonyms
Publications