NO19G01440.1, NO19G01440.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO19G01440.1
Unique NameNO19G01440.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1366
Alignment locationchr19:443064..444810 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr19genomechr19:443064..444810 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO19G01440.1 vs.
Match: EWM23628.1 (putative methyltransferase mitochondrial-like protein [Nannochloropsis gaditana])

HSP 1 Score: 416.4 bits (1069), Expect = 9.400e-113
Identity = 219/302 (72.52%), Postives = 250/302 (82.78%), Query Frame = 0 
Query:    9 ASAATATAKAFGRLRHRPISVPVTIVAGRPAASSFSSMPTMNIFDRAGKKRQRARASLASNWPEYDYLRAEVAKRLVDRLEDIMREFPEALELGAYGPHVAKEICAVQGLSGKGGAGGIERLVRCGVTEQGLL---LPSSSHSSSSPLKILPVLADEEHLPFSPQSFDLIISNLSLHWINDLPHAMRQACQALKPDGVLLASMLGGNTLKELRIALQLAEQEREGGISPHVSPAAHVADCGALLQAAGFALPTVDVDTLIVNFPDALVLMEHLQGMGESSAILTRRQHVSRETFLAAAAIYQ 308
            ++ ATA +      R R IS    IVA     S  SSMP++ IFDR GKKRQR+RA+   +W EY+YLRAEVAKRLVDRLEDIMR+FP+ALELGAYGPH+A+E+ AV+GL+GKGGAGGIE LVRCG+TE+GLL   + S S +     KIL ++ DEEHLPFSP SFDLI+SNLSLHWINDLP AM QA + LKPDGV LASM GGNTLKELR+A QLAEQEREGGISPHVSP+AHVADCG+LLQAAGFALPTVDVDT+ V++PDALVLMEHLQGMGESSAILTRR +VSRETFLAAAAIYQ
Sbjct:    7 SAVATAKSVYMSAARGR-ISTQFPIVA-----SPLSSMPSLTIFDRVGKKRQRSRAATKPDWAEYEYLRAEVAKRLVDRLEDIMRDFPQALELGAYGPHIAQEVNAVKGLNGKGGAGGIETLVRCGLTEEGLLPASMTSKSVTQEGDAKILNLVGDEEHLPFSPASFDLIVSNLSLHWINDLPGAMNQAREVLKPDGVFLASMFGGNTLKELRVAFQLAEQEREGGISPHVSPSAHVADCGSLLQAAGFALPTVDVDTITVSYPDALVLMEHLQGMGESSAILTRRPYVSRETFLAAAAIYQ 302
The following BLAST results are available for this feature:
BLAST of NO19G01440.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23628.19.400e-11372.52putative methyltransferase mitochondrial-like prot... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO19G01440NO19G01440Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO19G01440.1NO19G01440.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO19G01440.1.cds1NO19G01440.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G01440.1.cds2NO19G01440.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G01440.1.cds3NO19G01440.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO19G01440.1 ID=NO19G01440.1|Name=NO19G01440.1|organism=Nannochloropsis oceanica|type=mRNA|length=1366bp
AACAGGACAATGTTGGTAATAAAAAGAAGCCAGGCGTCTGCCGCGACTGC
AACAGCAAAGGCATTCGGCAGGCTCAGACACAGGCCTATTTCCGTCCCAG
TAACGATTGTAGCAGGCCGGCCGGCAGCCTCCTCCTTCTCATCCATGCCC
ACCATGAACATCTTTGACCGGGCGGGGAAGAAACGTCAGCGTGCCCGGGC
TTCCTTGGCATCTAACTGGCCCGAATACGATTATTTGAGGGCGGAAGTTG
CCAAGAGACTTGTGGATCGGTTGGAAGACATTATGCGTGAATTCCCAGAG
GCCTTGGAGTTGGGGGCGTACGGCCCTCACGTTGCCAAGGAGATTTGTGC
TGTCCAGGGATTGAGTGGCAAGGGTGGTGCAGGTGGAATCGAACGCCTGG
TCCGCTGCGGCGTCACCGAGCAAGGCCTCCTCCTTCCCTCTTCCTCTCAT
TCTTCTTCTTCACCGCTCAAAATCCTTCCCGTCCTGGCTGACGAGGAACA
TCTTCCCTTCTCCCCCCAGTCCTTCGATTTGATCATCAGCAATCTCTCTT
TGCATTGGATCAATGACCTCCCCCACGCGATGAGACAAGCCTGCCAAGCC
CTAAAACCCGACGGCGTCCTCCTTGCTTCCATGCTCGGCGGCAACACCCT
CAAAGAGCTTAGGATCGCTCTACAACTCGCCGAACAAGAAAGAGAAGGGG
GTATCTCCCCCCATGTCTCCCCAGCGGCGCATGTGGCTGATTGTGGGGCA
CTATTGCAAGCGGCGGGCTTTGCGTTGCCAACGGTGGACGTGGATACACT
GATTGTAAATTTCCCGGACGCTTTGGTGTTGATGGAGCATCTGCAGGGAA
TGGGAGAGAGCAGTGCCATATTGACGCGTAGACAACACGTTAGTCGAGAG
ACCTTCCTGGCAGCAGCTGCTATATATCAGGAGCTCTATGGGGAAAACGA
CGGGTCGGTCCCGGCTACGTTTCAAGTTGTGTACATGATTGGATGGGCGC
CGCACGAGTCGCAGCCACAGCCCAAGAAGCGGGGTTCGGGGAAGGTGAGT
CTCAAGATGCTGCAGAAAGGGGATATTAGCGAGGGCGGGAATGATGGCAG
TGGTGGGTGTTCAAGGCACAAATAGAAGTAAACATGGAAATGGAAGGAAA
AGAGGAGAGTGAGTGATACTTTCTAAATTGAGTAGTCGCAGTTCAATAGA
AAAATGAAGTAAAAGAAATGGAAAGCTGTGGACTTCCAAAAAAATCAGAG
TTCAAATTTGCTGTGTGAGTAGTCGATAGGAAGAAAATGCAGAGAGACTA
AAAGGAGGGAGGAATGAATGAGAAACGAGAGAGGGACGAGCTACGGGATC
CTCTTTTCCATGTGTG
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protein sequence of NO19G01440.1

>NO19G01440.1-protein ID=NO19G01440.1-protein|Name=NO19G01440.1|organism=Nannochloropsis oceanica|type=polypeptide|length=372bp
MLVIKRSQASAATATAKAFGRLRHRPISVPVTIVAGRPAASSFSSMPTMN
IFDRAGKKRQRARASLASNWPEYDYLRAEVAKRLVDRLEDIMREFPEALE
LGAYGPHVAKEICAVQGLSGKGGAGGIERLVRCGVTEQGLLLPSSSHSSS
SPLKILPVLADEEHLPFSPQSFDLIISNLSLHWINDLPHAMRQACQALKP
DGVLLASMLGGNTLKELRIALQLAEQEREGGISPHVSPAAHVADCGALLQ
AAGFALPTVDVDTLIVNFPDALVLMEHLQGMGESSAILTRRQHVSRETFL
AAAAIYQELYGENDGSVPATFQVVYMIGWAPHESQPQPKKRGSGKVSLKM
LQKGDISEGGNDGSGGCSRHK*
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mRNA from alignment at chr19:443064..444810+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO19G01440.1 ID=NO19G01440.1|Name=NO19G01440.1|organism=Nannochloropsis oceanica|type=mRNA|length=1747bp|location=Sequence derived from alignment at chr19:443064..444810+ (Nannochloropsis oceanica)
AACAGGACAATGTTGGTAATAAAAAGAAGCCAGGCGTCTGCCGCGACTGC
AACAGCAAAGGCATTCGGCAGGCTCAGACACAGGCCTATTTCCGTCCCAG
TAACGATTGTAGCAGGCCGGCCGGCAGCCTCCTCCTTCTCATCCATGCCC
ACCATGAACATCTTTGACCGGGCGGGGAAGAAACGTCAGCGTGCCCGGGC
TTCCTTGGCATCTAACTGGCCCGAATACGATTATTTGAGGGCGGAAGTTG
CCAAGAGACTTGTGGATCGGTTGGAAGACATTATGCGTGAATTCCCAGAG
GCCTTGGAGTTGGGGGCGTACGGCCCTCACGTTGCCAAGGAGATTTGTGC
TGTCCAGGGATTGAGTGGCAGTAAGTAGTAGAGTCACCTTACACCAAGAG
AGTATGCTCGTCGTCTTCCCTTTCAGCACATACATACGCTCATATACACA
CACATACAAATATACGCATACATCTTTACGCAGAGGGTGGTGCAGGTGGA
ATCGAACGCCTGGTCCGCTGCGGCGTCACCGAGCAAGGCCTCCTCCTTCC
CTCTTCCTCTCATTCTTCTTCTTCACCGCTCAAAATCCTTCCCGTCCTGG
CTGACGAGGAACATCTTCCCTTCTCCCCCCAGTCCTTCGATTTGATCATC
AGCAATCTCTCTTTGCATTGGATCAATGACCTCCCCCACGCGATGAGACA
AGCCTGCCAAGCCCTAAAACCCGACGGCGTCCTCCTTGCTTCCATGCTCG
GCGGCAACACCCTCAAAGAGCTTAGGATCGCTCTACAACTCGCCGAACAA
GAAAGAGAAGGGGGTATCTCCCCCCATGTCTCCCCAGCGGCGCATGTGGC
TGATTGTGGGGCACTATTGCAAGCGGCGGGCTTTGCGTTGCCAACGGTGG
ACGTGGATACACTGATTGTAAATTTCCCGGACGCTTTGGTGTTGATGGAG
CATCTGCAGGGAATGGGAGAGAGCAGTGCCATATTGACGCGTAGACAACA
CGTTAGTCGAGAGACCTTCCTGGCAGCAGCTGCTATATATCAGGTAGGGG
CATAGAGATGGAGGGATGGAGAGGAAGCGTTGGTGTTGATGGGCCATTGG
CAGGGAACGAGAGAGTCACGGTCCATTCTGCTGACACGGTGGCCATGTGT
GAGTCAAGCAATTTTTGTGGCAGCATCCACCAGATATCAGATTGGGGAGG
AGGGGCAAGGGCAAGGGCGGGAGGGTAAAAGATTATAGTTGCAGGGCATC
TTTGTGTTATGCTCACACATACTCATTTGAACCTTCCACTCATTCCTGTT
TTCTTCTTCAGGAGCTCTATGGGGAAAACGACGGGTCGGTCCCGGCTACG
TTTCAAGTTGTGTACATGATTGGATGGGCGCCGCACGAGTCGCAGCCACA
GCCCAAGAAGCGGGGTTCGGGGAAGGTGAGTCTCAAGATGCTGCAGAAAG
GGGATATTAGCGAGGGCGGGAATGATGGCAGTGGTGGGTGTTCAAGGCAC
AAATAGAAGTAAACATGGAAATGGAAGGAAAAGAGGAGAGTGAGTGATAC
TTTCTAAATTGAGTAGTCGCAGTTCAATAGAAAAATGAAGTAAAAGAAAT
GGAAAGCTGTGGACTTCCAAAAAAATCAGAGTTCAAATTTGCTGTGTGAG
TAGTCGATAGGAAGAAAATGCAGAGAGACTAAAAGGAGGGAGGAATGAAT
GAGAAACGAGAGAGGGACGAGCTACGGGATCCTCTTTTCCATGTGTG
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Coding sequence (CDS) from alignment at chr19:443064..444810+

>NO19G01440.1 ID=NO19G01440.1|Name=NO19G01440.1|organism=Nannochloropsis oceanica|type=CDS|length=1116bp|location=Sequence derived from alignment at chr19:443064..444810+ (Nannochloropsis oceanica)
ATGTTGGTAATAAAAAGAAGCCAGGCGTCTGCCGCGACTGCAACAGCAAA
GGCATTCGGCAGGCTCAGACACAGGCCTATTTCCGTCCCAGTAACGATTG
TAGCAGGCCGGCCGGCAGCCTCCTCCTTCTCATCCATGCCCACCATGAAC
ATCTTTGACCGGGCGGGGAAGAAACGTCAGCGTGCCCGGGCTTCCTTGGC
ATCTAACTGGCCCGAATACGATTATTTGAGGGCGGAAGTTGCCAAGAGAC
TTGTGGATCGGTTGGAAGACATTATGCGTGAATTCCCAGAGGCCTTGGAG
TTGGGGGCGTACGGCCCTCACGTTGCCAAGGAGATTTGTGCTGTCCAGGG
ATTGAGTGGCAAGGGTGGTGCAGGTGGAATCGAACGCCTGGTCCGCTGCG
GCGTCACCGAGCAAGGCCTCCTCCTTCCCTCTTCCTCTCATTCTTCTTCT
TCACCGCTCAAAATCCTTCCCGTCCTGGCTGACGAGGAACATCTTCCCTT
CTCCCCCCAGTCCTTCGATTTGATCATCAGCAATCTCTCTTTGCATTGGA
TCAATGACCTCCCCCACGCGATGAGACAAGCCTGCCAAGCCCTAAAACCC
GACGGCGTCCTCCTTGCTTCCATGCTCGGCGGCAACACCCTCAAAGAGCT
TAGGATCGCTCTACAACTCGCCGAACAAGAAAGAGAAGGGGGTATCTCCC
CCCATGTCTCCCCAGCGGCGCATGTGGCTGATTGTGGGGCACTATTGCAA
GCGGCGGGCTTTGCGTTGCCAACGGTGGACGTGGATACACTGATTGTAAA
TTTCCCGGACGCTTTGGTGTTGATGGAGCATCTGCAGGGAATGGGAGAGA
GCAGTGCCATATTGACGCGTAGACAACACGTTAGTCGAGAGACCTTCCTG
GCAGCAGCTGCTATATATCAGGAGCTCTATGGGGAAAACGACGGGTCGGT
CCCGGCTACGTTTCAAGTTGTGTACATGATTGGATGGGCGCCGCACGAGT
CGCAGCCACAGCCCAAGAAGCGGGGTTCGGGGAAGGTGAGTCTCAAGATG
CTGCAGAAAGGGGATATTAGCGAGGGCGGGAATGATGGCAGTGGTGGGTG
TTCAAGGCACAAATAG
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Synonyms
Publications