NO19G01350.1, NO19G01350.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO19G01350.1
Unique NameNO19G01350.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1757
Alignment locationchr19:419783..421934 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr19genomechr19:419783..421934 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO19G01350.1 vs.
Match: EWM23638.1 (dihydrolipoamide succinyltransferase [Nannochloropsis gaditana])

HSP 1 Score: 614.4 bits (1583), Expect = 3.000e-172
Identity = 359/474 (75.74%), Postives = 394/474 (83.12%), Query Frame = 0 
Query:    1 MLRRGVQSTSQGLQGSINAATKMAVGHTRNTFKSVPLVRLLHASSSPSSTHLLLRSTVNRIQHTFTQRDPFQFAVRAFSTPDGSNFLLNVPSMGDSITEGTIVNWQKREGDWVNADDVIVVLETDKVSVDVRAPRAGIVKEVIGAEGDTVGVGSPLAKIDTSAAKPEGASPEAVASAPAPPPPKAAAEAPASATPPP--PPPPNPAPTAAKP-TPSPAAAVKPSSPAPA-TAASAAAGSRTETRVKMNRMRLRIAERLKSAQNTAAMLTTFQEVDMGNLMEMRAAYKEEFEKTHGVKLGFMSAFVKASTAALLELPAVNAFIDEGTKEIVYRNYCDVSVAVASPAGLVVPVLRNAESMSFAGVEKQIALYGKKAKEGQLALEDMAGGTFTISNGGVFGSLFGTPIINPPQSAILGMHATKMRAVVGRDGQVMARPMMYLALTYDHRLIDGREAVTFLKSVAAKIEDPRRMVLEL 471
            MLRRG+ STS  LQG+I AA   A GH R T ++ P+  L+HA S+ + + L  +     I    T R      +RA S   G +F+LNVPSMGDSITEGTIVNWQK+ GDWV+ADDVIVVLETDKVSVDVRAPR+GI+ EVIGAE DTVGVG PLAKIDT+AAKPEGA+ ++ A  P PPPP   AEA A+A PPP  PPPP+P  T  KP TP+PA    P +P  A T   +A G+R+ETRVKMNRMRLRIAERLKSAQNTAAMLTTFQEVDMGNLM+MR AYKEEFEK HGVKLGFMSAFVKASTAAL E+PAVNAFID+GTKEIVYR+YCDVSVAVASPAGLVVPVLRNAE MSFAGVE+QIA+YGKKAKEG LALEDMAGGTFTISNGGVFGSL GTPIINPPQSAILGMHATKMRAVVG+DGQVMARPMMYLALTYDHRLIDGREAVTFLKSVAAKIEDPRRMVLEL
Sbjct:    2 MLRRGLWSTSSRLQGNIRAAAGRA-GHIRLTTQAAPVTNLVHAFSNSTLSTLPHQGPCRPIPAWSTHRS---LPIRALSASAGQDFILNVPSMGDSITEGTIVNWQKKVGDWVDADDVIVVLETDKVSVDVRAPRSGIITEVIGAEDDTVGVGVPLAKIDTTAAKPEGAA-QSSAPPPTPPPPPPKAEA-AAAPPPPSSPPPPSPPSTPPKPPTPAPA----PVAPGGASTGGPSAPGNRSETRVKMNRMRLRIAERLKSAQNTAAMLTTFQEVDMGNLMDMRKAYKEEFEKVHGVKLGFMSAFVKASTAALQEIPAVNAFIDDGTKEIVYRDYCDVSVAVASPAGLVVPVLRNAERMSFAGVERQIAMYGKKAKEGALALEDMAGGTFTISNGGVFGSLLGTPIINPPQSAILGMHATKMRAVVGKDGQVMARPMMYLALTYDHRLIDGREAVTFLKSVAAKIEDPRRMVLEL 465
The following BLAST results are available for this feature:
BLAST of NO19G01350.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23638.13.000e-17275.74dihydrolipoamide succinyltransferase [Nannochlorop... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO19G01350NO19G01350Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO19G01350.1NO19G01350.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO19G01350.1.cds1NO19G01350.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G01350.1.cds2NO19G01350.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO19G01350.1 ID=NO19G01350.1|Name=NO19G01350.1|organism=Nannochloropsis oceanica|type=mRNA|length=1757bp
ACAGAGAAGCGTACGCGCTCGCTTTTTTCGTGTGATCTCATGCTGCGTCG
CGGGGTCCAGTCCACGTCCCAGGGGCTTCAGGGCAGCATCAACGCAGCGA
CCAAGATGGCGGTAGGGCACACCCGCAACACCTTCAAGTCTGTGCCGCTG
GTCAGACTTCTGCATGCCTCCTCTTCCCCCTCCTCGACTCATCTCCTGTT
GCGTAGCACAGTCAACCGAATCCAACATACCTTTACGCAGCGAGACCCCT
TCCAGTTCGCAGTTCGGGCCTTCTCCACCCCCGATGGGTCCAACTTCCTC
CTCAACGTCCCCAGTATGGGCGATTCCATCACAGAGGGCACCATCGTCAA
TTGGCAGAAACGAGAAGGGGACTGGGTGAACGCCGATGATGTCATCGTGG
TCCTCGAGACCGACAAAGTCAGTGTAGATGTCCGTGCACCCCGCGCAGGG
ATCGTTAAGGAGGTGATTGGCGCTGAAGGCGATACCGTTGGCGTCGGTTC
TCCCCTAGCCAAGATTGACACGTCGGCCGCCAAGCCTGAAGGTGCTTCCC
CGGAAGCAGTTGCTTCTGCTCCTGCCCCTCCTCCCCCTAAGGCCGCTGCT
GAAGCTCCTGCTTCTGCCACCCCTCCTCCTCCCCCTCCTCCCAACCCGGC
CCCTACTGCGGCCAAACCTACTCCTTCTCCTGCTGCTGCTGTCAAACCCT
CCTCTCCTGCCCCCGCAACCGCTGCATCAGCCGCCGCTGGCTCGCGCACG
GAGACCCGGGTGAAGATGAACCGGATGCGTCTTCGTATTGCCGAACGGCT
TAAAAGTGCGCAGAACACCGCGGCGATGCTGACGACCTTCCAGGAAGTGG
ACATGGGTAACTTGATGGAGATGCGGGCTGCTTACAAGGAGGAGTTTGAG
AAGACCCACGGTGTGAAACTTGGTTTTATGTCGGCGTTTGTGAAGGCCTC
GACGGCCGCTCTTCTGGAGCTGCCGGCCGTGAATGCTTTCATTGACGAGG
GGACCAAGGAGATCGTGTATAGAAACTACTGCGATGTTTCGGTGGCTGTA
GCGAGTCCGGCTGGCTTAGTCGTGCCAGTGTTGAGGAATGCAGAGAGTAT
GTCTTTCGCAGGGGTGGAGAAACAGATTGCTCTGTACGGGAAAAAGGCGA
AGGAGGGGCAGCTGGCCTTGGAGGACATGGCGGGCGGAACGTTCACGATT
TCGAATGGCGGGGTGTTTGGGAGTTTGTTTGGGACTCCAATTATTAACCC
GCCACAAAGCGCGATTCTCGGAATGCATGCAACCAAGATGAGGGCGGTGG
TCGGGAGGGATGGCCAGGTGATGGCGAGGCCGATGATGTACTTGGCGCTG
ACGTATGACCATCGTTTGATCGATGGTCGGGAGGCGGTGACGTTTTTGAA
AAGCGTTGCGGCCAAGATTGAAGACCCGAGGCGGATGGTGTTGGAACTTT
GAGTGTAGAGGGGAGTAGGGGAGCATAAGAGGAGAATTTATGTTGTGTAG
GGGTAGATGGGGGATGAATCTGGCGGGAGGGGCTTGACTTAGTATATTTA
TTTCTTGTTCGGTTGGAGCGTAAGGACAAAGCATTACTTTTGTCGGAGGA
ACGGGGATCTACTAAAACGGGCGAGAAAATAGAGAGAGTTGGAAACGCGG
AGGGTGGCAGGGCACGGCAGAAATGTACGAAAGAGAGTAGCCGTGCAGAA
GGCAGTTAGACGCAACGACCTCTGTATCGAAGAGAATTTTGAGGCTGTCA
GGTGAAC
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protein sequence of NO19G01350.1

>NO19G01350.1-protein ID=NO19G01350.1-protein|Name=NO19G01350.1|organism=Nannochloropsis oceanica|type=polypeptide|length=471bp
MLRRGVQSTSQGLQGSINAATKMAVGHTRNTFKSVPLVRLLHASSSPSST
HLLLRSTVNRIQHTFTQRDPFQFAVRAFSTPDGSNFLLNVPSMGDSITEG
TIVNWQKREGDWVNADDVIVVLETDKVSVDVRAPRAGIVKEVIGAEGDTV
GVGSPLAKIDTSAAKPEGASPEAVASAPAPPPPKAAAEAPASATPPPPPP
PNPAPTAAKPTPSPAAAVKPSSPAPATAASAAAGSRTETRVKMNRMRLRI
AERLKSAQNTAAMLTTFQEVDMGNLMEMRAAYKEEFEKTHGVKLGFMSAF
VKASTAALLELPAVNAFIDEGTKEIVYRNYCDVSVAVASPAGLVVPVLRN
AESMSFAGVEKQIALYGKKAKEGQLALEDMAGGTFTISNGGVFGSLFGTP
IINPPQSAILGMHATKMRAVVGRDGQVMARPMMYLALTYDHRLIDGREAV
TFLKSVAAKIEDPRRMVLEL*
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mRNA from alignment at chr19:419783..421934-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO19G01350.1 ID=NO19G01350.1|Name=NO19G01350.1|organism=Nannochloropsis oceanica|type=mRNA|length=2152bp|location=Sequence derived from alignment at chr19:419783..421934- (Nannochloropsis oceanica)
ACAGAGAAGCGTACGCGCTCGCTTTTTTCGTGTGATCTCATGCTGCGTCG
CGGGGTCCAGTCCACGTCCCAGGGGCTTCAGGGCAGCATCAACGCAGCGA
CCAAGATGGCGGTAGGGGTAAGTTCTTGCTTGCTTCCATAAGTTGTACTT
TTCGACCCAAGCGGTGTGGGAAATAAAAAGCGGAGGGCATTGGTTGTATC
GGCAGGGTGTGACTGATTCCCATTAAGCAGGTCTGTGGGAGTTCCAGTGC
TCGCAATTGTCATAACGATGTTTGGCTGGCAACGAGGACAAAGGCAGGAT
GGGGAGGGTGATGAATCGGAGGAGGACGGACGAGTCCCAATCAAGTCCAG
CTGCAATCTTGGGGTACGCCCGCTCGAGCAAGACAGAAAGGGGAAGAGGA
GAAGACAAGTGTATCGTCACCTAGGACCCACTTTATCCATCGAAAGAAGG
ACGACGATGATCGCCCCCCCCTCTCTCACCCACCCCCTCCCACACTACCC
ACAACACCACAGCACACCCGCAACACCTTCAAGTCTGTGCCGCTGGTCAG
ACTTCTGCATGCCTCCTCTTCCCCCTCCTCGACTCATCTCCTGTTGCGTA
GCACAGTCAACCGAATCCAACATACCTTTACGCAGCGAGACCCCTTCCAG
TTCGCAGTTCGGGCCTTCTCCACCCCCGATGGGTCCAACTTCCTCCTCAA
CGTCCCCAGTATGGGCGATTCCATCACAGAGGGCACCATCGTCAATTGGC
AGAAACGAGAAGGGGACTGGGTGAACGCCGATGATGTCATCGTGGTCCTC
GAGACCGACAAAGTCAGTGTAGATGTCCGTGCACCCCGCGCAGGGATCGT
TAAGGAGGTGATTGGCGCTGAAGGCGATACCGTTGGCGTCGGTTCTCCCC
TAGCCAAGATTGACACGTCGGCCGCCAAGCCTGAAGGTGCTTCCCCGGAA
GCAGTTGCTTCTGCTCCTGCCCCTCCTCCCCCTAAGGCCGCTGCTGAAGC
TCCTGCTTCTGCCACCCCTCCTCCTCCCCCTCCTCCCAACCCGGCCCCTA
CTGCGGCCAAACCTACTCCTTCTCCTGCTGCTGCTGTCAAACCCTCCTCT
CCTGCCCCCGCAACCGCTGCATCAGCCGCCGCTGGCTCGCGCACGGAGAC
CCGGGTGAAGATGAACCGGATGCGTCTTCGTATTGCCGAACGGCTTAAAA
GTGCGCAGAACACCGCGGCGATGCTGACGACCTTCCAGGAAGTGGACATG
GGTAACTTGATGGAGATGCGGGCTGCTTACAAGGAGGAGTTTGAGAAGAC
CCACGGTGTGAAACTTGGTTTTATGTCGGCGTTTGTGAAGGCCTCGACGG
CCGCTCTTCTGGAGCTGCCGGCCGTGAATGCTTTCATTGACGAGGGGACC
AAGGAGATCGTGTATAGAAACTACTGCGATGTTTCGGTGGCTGTAGCGAG
TCCGGCTGGCTTAGTCGTGCCAGTGTTGAGGAATGCAGAGAGTATGTCTT
TCGCAGGGGTGGAGAAACAGATTGCTCTGTACGGGAAAAAGGCGAAGGAG
GGGCAGCTGGCCTTGGAGGACATGGCGGGCGGAACGTTCACGATTTCGAA
TGGCGGGGTGTTTGGGAGTTTGTTTGGGACTCCAATTATTAACCCGCCAC
AAAGCGCGATTCTCGGAATGCATGCAACCAAGATGAGGGCGGTGGTCGGG
AGGGATGGCCAGGTGATGGCGAGGCCGATGATGTACTTGGCGCTGACGTA
TGACCATCGTTTGATCGATGGTCGGGAGGCGGTGACGTTTTTGAAAAGCG
TTGCGGCCAAGATTGAAGACCCGAGGCGGATGGTGTTGGAACTTTGAGTG
TAGAGGGGAGTAGGGGAGCATAAGAGGAGAATTTATGTTGTGTAGGGGTA
GATGGGGGATGAATCTGGCGGGAGGGGCTTGACTTAGTATATTTATTTCT
TGTTCGGTTGGAGCGTAAGGACAAAGCATTACTTTTGTCGGAGGAACGGG
GATCTACTAAAACGGGCGAGAAAATAGAGAGAGTTGGAAACGCGGAGGGT
GGCAGGGCACGGCAGAAATGTACGAAAGAGAGTAGCCGTGCAGAAGGCAG
TTAGACGCAACGACCTCTGTATCGAAGAGAATTTTGAGGCTGTCAGGTGA
AC
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Coding sequence (CDS) from alignment at chr19:419783..421934-

>NO19G01350.1 ID=NO19G01350.1|Name=NO19G01350.1|organism=Nannochloropsis oceanica|type=CDS|length=1413bp|location=Sequence derived from alignment at chr19:419783..421934- (Nannochloropsis oceanica)
ATGCTGCGTCGCGGGGTCCAGTCCACGTCCCAGGGGCTTCAGGGCAGCAT
CAACGCAGCGACCAAGATGGCGGTAGGGCACACCCGCAACACCTTCAAGT
CTGTGCCGCTGGTCAGACTTCTGCATGCCTCCTCTTCCCCCTCCTCGACT
CATCTCCTGTTGCGTAGCACAGTCAACCGAATCCAACATACCTTTACGCA
GCGAGACCCCTTCCAGTTCGCAGTTCGGGCCTTCTCCACCCCCGATGGGT
CCAACTTCCTCCTCAACGTCCCCAGTATGGGCGATTCCATCACAGAGGGC
ACCATCGTCAATTGGCAGAAACGAGAAGGGGACTGGGTGAACGCCGATGA
TGTCATCGTGGTCCTCGAGACCGACAAAGTCAGTGTAGATGTCCGTGCAC
CCCGCGCAGGGATCGTTAAGGAGGTGATTGGCGCTGAAGGCGATACCGTT
GGCGTCGGTTCTCCCCTAGCCAAGATTGACACGTCGGCCGCCAAGCCTGA
AGGTGCTTCCCCGGAAGCAGTTGCTTCTGCTCCTGCCCCTCCTCCCCCTA
AGGCCGCTGCTGAAGCTCCTGCTTCTGCCACCCCTCCTCCTCCCCCTCCT
CCCAACCCGGCCCCTACTGCGGCCAAACCTACTCCTTCTCCTGCTGCTGC
TGTCAAACCCTCCTCTCCTGCCCCCGCAACCGCTGCATCAGCCGCCGCTG
GCTCGCGCACGGAGACCCGGGTGAAGATGAACCGGATGCGTCTTCGTATT
GCCGAACGGCTTAAAAGTGCGCAGAACACCGCGGCGATGCTGACGACCTT
CCAGGAAGTGGACATGGGTAACTTGATGGAGATGCGGGCTGCTTACAAGG
AGGAGTTTGAGAAGACCCACGGTGTGAAACTTGGTTTTATGTCGGCGTTT
GTGAAGGCCTCGACGGCCGCTCTTCTGGAGCTGCCGGCCGTGAATGCTTT
CATTGACGAGGGGACCAAGGAGATCGTGTATAGAAACTACTGCGATGTTT
CGGTGGCTGTAGCGAGTCCGGCTGGCTTAGTCGTGCCAGTGTTGAGGAAT
GCAGAGAGTATGTCTTTCGCAGGGGTGGAGAAACAGATTGCTCTGTACGG
GAAAAAGGCGAAGGAGGGGCAGCTGGCCTTGGAGGACATGGCGGGCGGAA
CGTTCACGATTTCGAATGGCGGGGTGTTTGGGAGTTTGTTTGGGACTCCA
ATTATTAACCCGCCACAAAGCGCGATTCTCGGAATGCATGCAACCAAGAT
GAGGGCGGTGGTCGGGAGGGATGGCCAGGTGATGGCGAGGCCGATGATGT
ACTTGGCGCTGACGTATGACCATCGTTTGATCGATGGTCGGGAGGCGGTG
ACGTTTTTGAAAAGCGTTGCGGCCAAGATTGAAGACCCGAGGCGGATGGT
GTTGGAACTTTGA
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Synonyms
Publications