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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
| chr19 | genome | chr19:356799..360995 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO19G01080.2 vs.
Match: EWM23613.1 (hypothetical protein Naga_101086g1 [Nannochloropsis gaditana]) HSP 1 Score: 216.1 bits (549), Expect = 2.600e-52 Identity = 117/203 (57.64%), Postives = 132/203 (65.02%), Query Frame = 0
Query: 40 MPRATEATPLNASDA------SHMNNGVELITEERFTSPQGRSILAFGLTVISVIFVLFIILTTLPHDHGKEKSSDPTTASPALKPISSHASPSTPAPSTPAKFDTAAVGSPINPHPRVNAPGCPSLGVPPPGRRFIQIKNNCQEPIWPGIIPAGSAVPPGNTWLWKAGECKTVEVASTLPSLRVWGRTQCNEDFNCVTGSCR 237
M A E TPLNA+ S E + EE TS GRSILAFG+TVISVIF LFIILT PH G+ SS P P P PA S P DTA VGSP PH R+ A GCP L PPPG RF+QIKNNC E +W G+IPAG+AVPPGN+WLW+AGECKT+ V S+L SLRVWGRT C+ DFNC+TGSCR
Sbjct: 1 MVSARETTPLNAARTHPALTNSSPPGEEEYVFEESLTSTHGRSILAFGITVISVIFGLFIILTAWPHAAGQAGSSSFPPDGPPQPPSLRPKDPVDPA-SIPT-VDTAVVGSPTRPHARLQASGCPPLAAPPPGHRFLQIKNNCNESLWLGVIPAGAAVPPGNSWLWEAGECKTLTVVSSLASLRVWGRTHCDADFNCLTGSCR 201
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO19G01080.2 ID=NO19G01080.2|Name=NO19G01080.2|organism=Nannochloropsis oceanica|type=mRNA|length=3337bp GCATAATTTGAAGCTTGCACGAGAATTACGCATCAACGGTGGGGTGTGTG TGTGGGGTTTTGGGCAACAGCATCTGTCCATCACCTCAAAAATGCAGACG AAACACCGACACAGGATCACATATTGTCCGTCTGTGAATCGATGCAGGTG GCATTGAACGTAGAGGCGTATCCGCCAATTCGGTGCTAGCGAGTGCGGGC AACGCCATTATTATTCCCCGCTCTCCATCCCATGCCAAACCCACCACGCT GGGTCGTTCTAACGCACAGCCTTGTCTACAAGCTCCATTTACACTCATTT CCATGCACGTGTGTATTTCCCGCTTACATCCAATCCTCCACACCTATCGC AACACATTTGACAAAGCTCCCTTCCTGTTGGAAGTCGGACAGCGGGCGGA AGCGGAGCTTGAGATCATCATGCCTCGGGCTACAGAAGCAACACCTCTCA ATGCGTCCGACGCGAGCCATATGAACAATGGCGTTGAGCTTATCACGGAG GAGCGTTTCACTTCCCCGCAAGGCCGGTCCATCCTTGCTTTCGGCCTCAC CGTTATCTCCGTCATCTTCGTCCTATTTATTATCCTGACTACCCTCCCCC ACGACCACGGCAAGGAGAAATCATCCGATCCCACCACCGCCTCCCCCGCC CTAAAGCCTATCAGCTCGCACGCTTCTCCCTCCACTCCTGCACCTAGTAC CCCGGCCAAATTCGACACAGCCGCTGTCGGTAGTCCAATAAACCCCCACC CTCGTGTCAACGCCCCGGGCTGCCCTTCCCTTGGTGTGCCGCCGCCGGGG CGTCGTTTTATTCAGATCAAGAATAACTGCCAAGAGCCGATATGGCCGGG TATTATTCCGGCAGGTTCAGCGGTGCCGCCTGGGAACACGTGGCTGTGGA AGGCAGGAGAGTGCAAAACGGTGGAGGTTGCCTCGACGTTACCGAGCTTA AGGGTGTGGGGAAGGACGCAGTGCAACGAGGATTTCAATTGTGTCACGGG ATCCTGTCGCGTGGAAGGCAATGGAGGATGTGTGAGCGCGGGGGAGGCGC CGTGTAGTCTGTGGGAGGCGACATTGCAGGATCATTGCACCCCGAAGCCG GTGGCCGGAATGGGCCCAGATTTCTTCGACACCTCCCTTGTGGACGGCTA CAACCTCCCCATCCGTGCTCAACCGTCCGGCGGCTTTAATGTCGGTCAGG TCCAAGGTGCCTTCTCCTGCCAGGCGCCCGTTGCCAACACCTTTGATTTC GACGCGTGCCCCTACGAGCTCCGCGTCTACAGTGACAGCATTCCAGGGAC GAATTTGCCTGTCGAGGGGTTGGCTGGCAAGAACCAGGTCACCTCTCCCT GCTTTCAGACGCCTCTCAATGCCACGTGTCGAGCGGCGGTGATCGGCTGC CGGTCGCTCTGCAAGGCCCTAGACCAGGGGTGGTTGGGCTATTACATTAA TAACGTGGAGGGCCCTCGGGACCTGGTGGACCCCCTCCTGACCCGTCCAA CGGGGGAGACTATCCGGTGGTCGGCCCAATTTATCCCCCAGCCTCCGCCG GGCGGCAGCAGCAGCAGCAGCAGCAGCCGCAGTAGTACGAGAAAATGTGA CCCAACCATGTTGTGCAGAGACGTACCGGCCTGGGGGGCTTACAGAGGGG CGGCGTACGCGGGGAATGGAAACATGAAGAGCCTCGTCTGCTGTGACTCG GGCTTTCGATGCTCTCCTTACCAACCCAACAACGTACCCGGAGGATGCCC TTACGCTCAAGCTTGCCCCACGCTGGGGTCGTCGGACCCGGCCTCCTCCT TCCATCACAAGAAGGGCGTGAGCGATGCCACCTACCCGCAGTACGACGAG GAAATGCGGTAGGGAAGAGGGAAGAGGAGGGCAGGGCGAGAGGGATGGAG AAAGGAAAACAGGTGCACCTCCTTTAACCCCTCAGCTGACTACGACGAGA GTATCAGAGAATTCTCAATTTCCTCCCCCTCCGTCAATTCGTCTCTCTCC CCCTCCGTCCCTCCTTTCGTTCCTCCCTCCAGCATGTCCTCCTCGCTGCC CGACTGGCCCATGCCGACCAAGGGAGAGAACTATGCCCAAATCTACAAGG AGAGCTCCCCGAGTGCCTACGCTTGGCAATACAATGACATCTCCTCCACG TATGTCTGCTGTGGGAAAGAGGGTCAAGCAGGGCCGTCGTACATCCTCAC TTTCTGTCCGGACGAATGAGAATAAATAGAACCAGACGATTATTTGTAGG CGGTTTTGTATTTTATGTTGCGTGGGTGAGAAGGAGGTATGCAGTGTGTG GGTGTTGGTTGGGGGGGGGGGGAAAGGGAGAGGGGATGGTCGCATGAATT ACACTAGAGAGGGCGAGAGAGAAGGAGAGCGAGCGAGAGAAAGACAGGAG TGGACCGTGCGGAGAAAAATGAGGGACAAAAAGCAGGACAGCGAATCCCC CAATAGACTTGTAGCTATCTCATCTTGAAAGTAGAGAAAGGAAAAGGGAA AGAATATTTGAGTAGAAAACGAGATGAATCTATGATATGTGTATATACTA GTAGATTTCAGTATTCAAAAGATGGAACAGAGGGAGAAGGAGGAGAGGGA GGAATTTAAGGTTTATAATAAGGGTCGGTTTATTCGCATTTTTCCCGATC GATATATTTACGGTCTTCCTCTTTGTGGGAAACAAGAAGAAATTGTTAGG GCGCAAGCAGATTTTTCCATTTGATGTTCCCTCTTGTGTGTCTGATGGAG GGAGGGATGGAGGCAAGGAGGGAGGGAGGGAGGGAGGGAAGTGCCTGAGA AGAGTAAGAATAGCCAAACCAGCTTTCTCCCCCCGGAGATTCAGCAGGCG AACGAAAAAATCGATAGGAAAGCACGAAGAGAAGATTTCAAATCTCTATT CGTACCTCCATTTCATCATTTTGATTCATTTCTGTTCGTGTCCCTCCCTT ATTCGCAACTCGATTTTCTCTCTCCAGCACCTCCGCTCCGGACATGCACA TTCATACGTCGGAGGTTTTTGTACGCGCGGGCATACCTACTGGGTACATA GTATGTAGAAAGGAGATAGAGCGCGTTTCTAAAAGCACTCATACCACATT GGAAACGGTTTTTTTCTAAATTACATTTGAAACGTCCTTATAAGCTTTCC AATAAAATCACGCCTGTGGGAGAAGGGAGAGCTTCCGAAATCGCAGTGAA AATCCTTCGATGGATTTCATGAGACAAAATCTCTACCATCGTCGATCAAG ACTCGGCTTTAAATTCAAATAAAGACCAAACAGATAGGTACAAGCAAAGC GAAATGAACAGAAGAGCGTTGGAACATTCTCATTACC back to topprotein sequence of NO19G01080.2 >NO19G01080.2-protein ID=NO19G01080.2-protein|Name=NO19G01080.2|organism=Nannochloropsis oceanica|type=polypeptide|length=520bp MHVCISRLHPILHTYRNTFDKAPFLLEVGQRAEAELEIIMPRATEATPLN ASDASHMNNGVELITEERFTSPQGRSILAFGLTVISVIFVLFIILTTLPH DHGKEKSSDPTTASPALKPISSHASPSTPAPSTPAKFDTAAVGSPINPHP RVNAPGCPSLGVPPPGRRFIQIKNNCQEPIWPGIIPAGSAVPPGNTWLWK AGECKTVEVASTLPSLRVWGRTQCNEDFNCVTGSCRVEGNGGCVSAGEAP CSLWEATLQDHCTPKPVAGMGPDFFDTSLVDGYNLPIRAQPSGGFNVGQV QGAFSCQAPVANTFDFDACPYELRVYSDSIPGTNLPVEGLAGKNQVTSPC FQTPLNATCRAAVIGCRSLCKALDQGWLGYYINNVEGPRDLVDPLLTRPT GETIRWSAQFIPQPPPGGSSSSSSSRSSTRKCDPTMLCRDVPAWGAYRGA AYAGNGNMKSLVCCDSGFRCSPYQPNNVPGGCPYAQACPTLGSSDPASSF HHKKGVSDATYPQYDEEMR* back to topmRNA from alignment at chr19:356799..360995- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO19G01080.2 ID=NO19G01080.2|Name=NO19G01080.2|organism=Nannochloropsis oceanica|type=mRNA|length=4197bp|location=Sequence derived from alignment at chr19:356799..360995- (Nannochloropsis oceanica) GCATAATTTGAAGCTTGCACGAGAATTACGCATCAACGGTGGGGTGTGTG
TGTGGGGTTTTGGGCAACAGCATCTGTCCATCACCTCAAAAATGCAGACG
AAACACCGACACAGGATCACATATTGTCCGTCTGTGAATCGATGCAGGTG
GCATTGAACGTAGAGGCGTATCCGCCAATTCGGTGCTAGCGAGTGCGGGC
AACGCCATTATTATTCCCCGCTCTCCATCCCATGCCAAACCCACCACGCT
GGGTCGTTCTAACGCACAGCCTTGTCTACAAGCTCCATTTACACTCATTT
CCATGCACGTGTGTATTTCCCGCTTACATCCAATCCTCCACACCTATCGC
AACACATTTGACAAAGCTCCCTTCCTGTTGGAAGTCGGACAGCGGGCGGA
AGCGGAGCTTGAGATCATCATGCCTCGGGCTACAGAAGCAACACCTCTCA
ATGCGTCCGACGCGAGCCATATGAACAATGGCGTTGAGCTTATCACGGAG
GAGCGTTTCACTTCCCCGCAAGGCCGGTCCATCCTTGCTTTCGGCCTCAC
CGTTATCTCCGTCATCTTCGTCCTATTTATTATCCTGACTACCCTCCCCC
ACGACCACGGCAAGGAGAAATCATCCGATCCCACCACCGCCTCCCCCGCC
CTAAAGCCTATCAGCTCGCACGCTTCTCCCTCCACTCCTGCACCTAGTAC
CCCGGCCAAATTCGACACAGCCGCTGTCGGTAGTCCAATAAACCCCCACC
CTCGTGTCAACGCCCCGGGCTGCCCTTCCCTTGGTGTGCCGCCGCCGGGG
CGTCGTTTTATTCAGATCAAGAATAACTGCCAAGAGCCGATATGGCCGGG
TATTATTCCGGCAGGTTCAGCGGTGCCGCCTGGGAACACGTGGCTGTGGA
AGGCAGGAGAGTGCAAAACGGTGGAGGTTGCCTCGACGTTACCGAGCTTA
AGGGTGTGGGGAAGGACGCAGTGCAACGAGGATTTCAATTGTGTCACGGG
ATCCTGTCGCGTGGAAGGCAATGGAGGATGTGTGAGCGCGGGGGAGGCGC
CGTGTAGTCTGTGGGAGGCGACATTGCAGGATCATTGCACCCCGAAGCCG
GTGGCCGGAATGGTAAGATTCAAGATTCATTCCAAACTTACCTATCGCAA
TACAGGATTATGACCTTAAGTTGTTCTGGAATAGGGAGGCAAAGCAATCG
GCAGGAATGGTAACATTCATTGCATGCACCTATGTATGCATTTATGTTTG
TTTGCTGTTGTGGAAGGGGAAGGGGAGGGGGAGGAGGCTAAGCAAGATTC
CCCCCTCCCTTATGTCTCCATGCTCACCAACCTCCTCTCCCACTTACTAC
CCCTCATCCACTCCATCAGGGCCCAGATTTCTTCGACACCTCCCTTGTGG
ACGGCTACAACCTCCCCATCCGTGCTCAACCGTCCGGCGGCTTTAATGTC
GGTCAGGTCCAAGGTGCCTTCTCCTGCCAGGCGCCCGTTGCCAACACCTT
TGATTTCGACGCGTGCCCCTACGAGCTCCGCGTCTACAGTGGTATATCTT
CCTCCCCTCCCTCCCTCACTGCCTCCCTCCCTCCCTCCATCCTTTTTCTG
TCACAAAAAGCATTTTTAGAAAAACAACGTAACCGTGGAATCACCGAAGC
AACTCCCCCTCCATCCCCCCCCCGCCACCCCTCCGTCATAGACAGCATTC
CAGGGACGAATTTGCCTGTCGAGGGGTTGGCTGGCAAGAACCAGGTCACC
TCTCCCTGCTTTCAGACGCCTCTCAATGCCACGTGTCGAGCGGCGGTGAT
CGGCTGCCGGTCGCTCTGCAAGGCCCTAGACCAGGGGTGGTTGGGTGAGT
CAGAAGGGAGGGAGGGATGGAGAAGGAAGTGAGAAAGGGAGGAGGGGAGA
AAGAGAGAGCACTGCTTGTCATTAGTTCTTCAATAACTAACGCTCACAAA
TCCTCCCGCTTATTCCTCCCGCCCTCCCGCCCGCCCTCCCTTCCTCCCCT
CCCCCCTCCCTTTTTCTTTCCAGGCTATTACATTAATAACGTGGAGGGCC
CTCGGGACCTGGTGGACCCCCTCCTGACCCGTCCAACGGGGGAGACTATC
CGGTGGTCGGCCCAATTTATCCCCCAGCCTCCGCCGGGCGGCAGCAGCAG
CAGCAGCAGCAGCCGCAGTAGTACGAGAAAATGTGACCCAACCATGTTGT
GCAGAGACGTACCGGCCTGGGGGGCTTACAGAGGGGCGGCGTACGCGGGG
AATGGAAACATGAAGAGCCTCGTCTGCTGTGACTCGGGCTTTCGATGGTG
AAGTGAAAGGGAGGGAGGGAGGGAGGGACCGAGAGAGGGAAGATGGCGCA
TTTTCCTTAGCGCTCTCTTTTCCCCTGTCCTTGTAACACACTCCCATCGC
CACTTGACCAAACAGCCTACCTCTTTCCCTACCTCCCTTCCCCCAGCTCT
CCTTACCAACCCAACAACGTACCCGGAGGATGCCCTTACGCTCAAGCTTG
CCCCACGCTGGGGTCGTCGGACCCGGCCTCCTCCTTCCATCACAAGAAGG
GCGTGAGCGATGCCACCTACCCGCAGTACGACGAGGAAATGCGGTAGGGA
AGAGGGAAGAGGAGGGCAGGGCGAGAGGGATGGAGAAAGGAAAACAGGTG
CACCTCCTTTAACCCCTCAGCTGACTACGACGAGAGTATCAGAGAATTCT
CAATTTCCTCCCCCTCCGTCAATTCGTCTCTCTCCCCCTCCGTCCCTCCT
TTCGTTCCTCCCTCCAGCATGTCCTCCTCGCTGCCCGACTGGCCCATGCC
GACCAAGGGAGAGAACTATGCCCAAATCTACAAGGAGAGCTCCCCGAGTG
CCTACGCTTGGTGAGGGGAGAGAGGGAGGGAAGGAAGGCAAGGTGGGATC
ATCCCCCTGATTGTGTTTCGACCACCATTTCCCTCACGTTTCCTCCCGCC
CTTCCTCCCCCCCGCTCTCCCGCCCTCCCTGCCAGGCAATACAATGACAT
CTCCTCCACGTATGTCTGCTGTGGGAAAGAGGGTCAAGCAGGGCCGTCGT
ACATCCTCACTTTCTGTCCGGACGAATGAGAATAAATAGAACCAGACGAT
TATTTGTAGGCGGTTTTGTATTTTATGTTGCGTGGGTGAGAAGGAGGTAT
GCAGTGTGTGGGTGTTGGTTGGGGGGGGGGGGAAAGGGAGAGGGGATGGT
CGCATGAATTACACTAGAGAGGGCGAGAGAGAAGGAGAGCGAGCGAGAGA
AAGACAGGAGTGGACCGTGCGGAGAAAAATGAGGGACAAAAAGCAGGACA
GCGAATCCCCCAATAGACTTGTAGCTATCTCATCTTGAAAGTAGAGAAAG
GAAAAGGGAAAGAATATTTGAGTAGAAAACGAGATGAATCTATGATATGT
GTATATACTAGTAGATTTCAGTATTCAAAAGATGGAACAGAGGGAGAAGG
AGGAGAGGGAGGAATTTAAGGTTTATAATAAGGGTCGGTTTATTCGCATT
TTTCCCGATCGATATATTTACGGTCTTCCTCTTTGTGGGAAACAAGAAGA
AATTGTTAGGGCGCAAGCAGATTTTTCCATTTGATGTTCCCTCTTGTGTG
TCTGATGGAGGGAGGGATGGAGGCAAGGAGGGAGGGAGGGAGGGAGGGAA
GTGCCTGAGAAGAGTAAGAATAGCCAAACCAGCTTTCTCCCCCCGGAGAT
TCAGCAGGCGAACGAAAAAATCGATAGGAAAGCACGAAGAGAAGATTTCA
AATCTCTATTCGTACCTCCATTTCATCATTTTGATTCATTTCTGTTCGTG
TCCCTCCCTTATTCGCAACTCGATTTTCTCTCTCCAGCACCTCCGCTCCG
GACATGCACATTCATACGTCGGAGGTTTTTGTACGCGCGGGCATACCTAC
TGGGTACATAGTATGTAGAAAGGAGATAGAGCGCGTTTCTAAAAGCACTC
ATACCACATTGGAAACGGTTTTTTTCTAAATTACATTTGAAACGTCCTTA
TAAGCTTTCCAATAAAATCACGCCTGTGGGAGAAGGGAGAGCTTCCGAAA
TCGCAGTGAAAATCCTTCGATGGATTTCATGAGACAAAATCTCTACCATC
GTCGATCAAGACTCGGCTTTAAATTCAAATAAAGACCAAACAGATAGGTA
CAAGCAAAGCGAAATGAACAGAAGAGCGTTGGAACATTCTCATTACC back to topCoding sequence (CDS) from alignment at chr19:356799..360995- >NO19G01080.2 ID=NO19G01080.2|Name=NO19G01080.2|organism=Nannochloropsis oceanica|type=CDS|length=1560bp|location=Sequence derived from alignment at chr19:356799..360995- (Nannochloropsis oceanica) ATGCACGTGTGTATTTCCCGCTTACATCCAATCCTCCACACCTATCGCAA CACATTTGACAAAGCTCCCTTCCTGTTGGAAGTCGGACAGCGGGCGGAAG CGGAGCTTGAGATCATCATGCCTCGGGCTACAGAAGCAACACCTCTCAAT GCGTCCGACGCGAGCCATATGAACAATGGCGTTGAGCTTATCACGGAGGA GCGTTTCACTTCCCCGCAAGGCCGGTCCATCCTTGCTTTCGGCCTCACCG TTATCTCCGTCATCTTCGTCCTATTTATTATCCTGACTACCCTCCCCCAC GACCACGGCAAGGAGAAATCATCCGATCCCACCACCGCCTCCCCCGCCCT AAAGCCTATCAGCTCGCACGCTTCTCCCTCCACTCCTGCACCTAGTACCC CGGCCAAATTCGACACAGCCGCTGTCGGTAGTCCAATAAACCCCCACCCT CGTGTCAACGCCCCGGGCTGCCCTTCCCTTGGTGTGCCGCCGCCGGGGCG TCGTTTTATTCAGATCAAGAATAACTGCCAAGAGCCGATATGGCCGGGTA TTATTCCGGCAGGTTCAGCGGTGCCGCCTGGGAACACGTGGCTGTGGAAG GCAGGAGAGTGCAAAACGGTGGAGGTTGCCTCGACGTTACCGAGCTTAAG GGTGTGGGGAAGGACGCAGTGCAACGAGGATTTCAATTGTGTCACGGGAT CCTGTCGCGTGGAAGGCAATGGAGGATGTGTGAGCGCGGGGGAGGCGCCG TGTAGTCTGTGGGAGGCGACATTGCAGGATCATTGCACCCCGAAGCCGGT GGCCGGAATGGGCCCAGATTTCTTCGACACCTCCCTTGTGGACGGCTACA ACCTCCCCATCCGTGCTCAACCGTCCGGCGGCTTTAATGTCGGTCAGGTC CAAGGTGCCTTCTCCTGCCAGGCGCCCGTTGCCAACACCTTTGATTTCGA CGCGTGCCCCTACGAGCTCCGCGTCTACAGTGACAGCATTCCAGGGACGA ATTTGCCTGTCGAGGGGTTGGCTGGCAAGAACCAGGTCACCTCTCCCTGC TTTCAGACGCCTCTCAATGCCACGTGTCGAGCGGCGGTGATCGGCTGCCG GTCGCTCTGCAAGGCCCTAGACCAGGGGTGGTTGGGCTATTACATTAATA ACGTGGAGGGCCCTCGGGACCTGGTGGACCCCCTCCTGACCCGTCCAACG GGGGAGACTATCCGGTGGTCGGCCCAATTTATCCCCCAGCCTCCGCCGGG CGGCAGCAGCAGCAGCAGCAGCAGCCGCAGTAGTACGAGAAAATGTGACC CAACCATGTTGTGCAGAGACGTACCGGCCTGGGGGGCTTACAGAGGGGCG GCGTACGCGGGGAATGGAAACATGAAGAGCCTCGTCTGCTGTGACTCGGG CTTTCGATGCTCTCCTTACCAACCCAACAACGTACCCGGAGGATGCCCTT ACGCTCAAGCTTGCCCCACGCTGGGGTCGTCGGACCCGGCCTCCTCCTTC CATCACAAGAAGGGCGTGAGCGATGCCACCTACCCGCAGTACGACGAGGA AATGCGGTAG back to top
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