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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr19 | genome | chr19:301869..304149 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO19G00890.1 vs.
Match: EWM23597.1 (g1 s-specific cyclin-e [Nannochloropsis gaditana]) HSP 1 Score: 530.8 bits (1366), Expect = 6.800e-147 Identity = 368/745 (49.40%), Postives = 454/745 (60.94%), Query Frame = 0
Query: 58 ETCGDSTLAAACDETLDEEELETFAICTVPIPCSSSSSRYSYRATTTMITSNHQPCRSAYYQKIGLALPPEVTLHNMKHYGRRHFLKLREAEVQ-NAPDPTYEHRQIELRPDMRAQLLDWLMEVSANFFVRRRTFQAAVNYCDRFLSTVAVVFPKEKLQLLAITSLFVSSKMEEVYPAKAQELAEATAGAFTACDIVTFEIELMTSLAWNLTPPTSDDWAEWYLLAFLERGIPVAASAFQRQQHQQREQQQQQQRQQQQQQQSQQQQHLLLFQRLPTGVALRLQLLLDLALLDVTSLHFYPSMLAAAGLYLLLPHSFHPALAFATGYQPGDRALKHCKAYLTFLSTGLFDALPPL-----------HDQQHQHQSFWTTVVSPRAQAAQVLVPMWDRHSLQNHPANLLPHLLGRITAISGHGDD-------TNLCKNSDCNIKSGDDGSSSSSS----SSSMFVAAAVAANASAAAAVAAAVLVPPSPPSTTLPP-PSFLGYRSVFSGNSL--MKEKEDEDEEG------------MDFSVDG-----EDEEEEGTEGEEEEE--GEEEDTEANEGEVNEEDFFGHSLELHDDW-----GYTTKKNICERVEKQGRREGEDYSCDHVLRLEELGGDGSENELGWSMATTMDPQTTRDSIVSFFPSEEKEKGEDG----------VEVDGWMEREERRL----ENEKEE--EEDEDNDMRGKPWNDGTSSPCLASFFFPHDVVSSS 737
+ C DS LAAAC ETL+ E+LE A C + S YS + +P RS++Y K GL LPP+VTLHNMKHYGRRHFLK+RE+E+ A DP YE RQIELRPDMRAQL+DWLMEV ANF V RRTFQAAVN+CDR+LS A FPK++LQLLAIT+LFV++KM+EVYP KA +LAEATAGAF A D+V FE +L+T+L+WNLTPPT DDWAEWY LAFLERG+P AA+ + QQ L L Q LPTG+A ++Q+LLDLALLDVTS+HF+PSMLAAA LY+LLP F+PALA ATGY P D+AL+HCKAYLTFL+TGLFD+ PL H Q Q ++AAQ VP+WD+HSLQ+HP+ LLPHLLGRI+AIS H DD + + + +G+ + ++SS SS +A+ +A+ A A A ++ P + L P PSFLGYRSV S N + K + DE E+G MD S +G E+EEEEG EEEEE G EE+ E +G +ED FGHSLELH++W G K C + +GR G LRLE L G+ SENELGWSMATT+DPQTTRDS+ SFF E E G+DG E+ GW R N +E E +E +MR N SSPCL F P + +S
Sbjct: 6 KACEDSVLAAACHETLEMEDLEALATC--------AKSTYSGDVGGDTWIQSRRPSRSSFYLKTGLFLPPDVTLHNMKHYGRRHFLKMRESEMHIYACDPCYEERQIELRPDMRAQLVDWLMEVCANFSVHRRTFQAAVNHCDRYLSLCARGFPKQRLQLLAITALFVAAKMDEVYPPKAHDLAEATAGAFHARDLVVFEQDLLTTLSWNLTPPTPDDWAEWYFLAFLERGLPAAATEMKAASAPSLSQQDLSS--------------LALLQHLPTGIAQKVQVLLDLALLDVTSIHFFPSMLAAAALYVLLPPVFYPALALATGYPPNDKALEHCKAYLTFLATGLFDSSLPLQALPLSRRHLQHGQPGQRAGGGFGWTPEASEAAQSGVPLWDKHSLQSHPSRLLPHLLGRISAISDHCDDLPPPPPHAPKTQGAQADNPAGNAAALATSSLSPPCSSASPSASTLPSATRAPAALADLVTPIHAKARLLSPLPSFLGYRSVSSKNLIAGRKGRCDEWEDGEAMFMETLEMWPMDESENGEETEEEEEEEEGGAEEEEEEKGGAEEEEEGRKG--MDEDIFGHSLELHEEWESGRRGRERKAGRCGLGQDKGRGAG-----PQSLRLEALDGEASENELGWSMATTVDPQTTRDSVFSFFSLEGTEGGQDGGHGLGSGRGSEEMLGWQHEVRERFGEDCTNTQESCGEGEELEEMR----NVALSSPCLTPIFCPDEAKVAS 717
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO19G00890.1 ID=NO19G00890.1|Name=NO19G00890.1|organism=Nannochloropsis oceanica|type=mRNA|length=2211bp
ATGGAGCAAGCAAGCATGGACTGTCTTGGCACCGACTGCAGGGCACGGCG
TTTTCACTCCGCCCTGGACGGAGGCAGCAGCAGTAGCAGTAGCAGTAGCA
GTAACAGTAACAGTAACAGCAGTGATGTCCACCACGAGCAGCGTCACCAT
TACCAGACCCACAAGTCTTGGGAAACGTGCGGGGACAGCACGCTGGCGGC
CGCATGCGACGAGACGCTTGACGAGGAGGAGCTCGAAACCTTTGCCATCT
GTACCGTCCCCATCCCCTGCAGCAGTAGCAGCAGCAGGTACAGCTACAGA
GCCACAACGACGATGATAACAAGCAATCACCAACCCTGTCGCAGCGCCTA
CTACCAAAAAATCGGCCTGGCTCTTCCCCCTGAGGTAACACTGCACAACA
TGAAGCACTACGGACGTCGGCACTTTCTGAAATTGCGCGAGGCCGAAGTA
CAAAATGCTCCCGACCCCACGTACGAACATCGGCAGATAGAACTTCGCCC
CGACATGCGTGCCCAGCTCCTGGACTGGCTCATGGAAGTAAGTGCCAATT
TCTTCGTCCGTCGCCGTACCTTTCAAGCAGCCGTCAACTACTGCGATCGG
TTCCTGTCAACCGTTGCCGTTGTCTTTCCCAAGGAGAAGCTGCAGCTGCT
GGCAATTACCTCCCTCTTTGTATCCTCAAAAATGGAAGAAGTTTACCCAG
CCAAAGCCCAAGAACTCGCCGAAGCCACCGCCGGGGCATTCACCGCCTGC
GATATCGTTACATTTGAGATTGAGCTGATGACAAGCCTAGCCTGGAATCT
CACCCCCCCAACGTCCGACGACTGGGCCGAATGGTATCTCCTCGCTTTCC
TCGAACGCGGTATTCCCGTTGCAGCGTCAGCTTTTCAACGCCAACAACAT
CAACAGCGTGAACAGCAGCAGCAGCAACAGAGGCAACAGCAGCAGCAACA
GCAATCCCAGCAGCAACAGCACCTCCTTCTTTTTCAACGCCTCCCCACTG
GGGTTGCCCTACGGCTGCAGCTGCTGTTGGACTTAGCCCTGCTTGACGTT
ACCTCCCTCCACTTCTATCCCTCTATGCTGGCAGCCGCCGGGCTCTATCT
CCTCCTCCCCCACAGTTTTCACCCCGCGCTGGCCTTCGCGACGGGCTACC
AACCCGGAGACCGTGCGCTCAAGCACTGTAAGGCCTACCTCACCTTCCTC
TCAACCGGTCTGTTCGACGCTCTCCCCCCCCTTCACGACCAACAGCACCA
ACACCAATCTTTTTGGACGACGGTAGTCTCCCCCCGGGCTCAAGCCGCGC
AGGTCTTGGTGCCGATGTGGGACAGACACAGTCTTCAAAACCACCCGGCT
AACCTCCTCCCCCACCTTCTCGGGCGCATCACGGCCATCTCTGGTCACGG
CGATGATACCAATTTGTGTAAAAACAGCGACTGCAATATCAAGAGCGGCG
ATGATGGCAGCAGCAGCAGCAGCAGCAGCAGCAGCATGTTCGTCGCTGCT
GCCGTGGCTGCTAATGCCTCTGCTGCAGCTGCTGTCGCTGCTGCTGTATT
GGTACCACCCTCTCCCCCATCGACGACGCTGCCTCCGCCTTCGTTTTTAG
GATACCGCTCTGTTTTTTCAGGGAATTCACTAATGAAAGAAAAGGAGGAC
GAGGACGAGGAAGGGATGGATTTTTCGGTAGATGGCGAGGATGAGGAAGA
GGAAGGGACTGAGGGAGAAGAGGAGGAGGAAGGGGAAGAGGAGGATACGG
AAGCGAATGAGGGGGAAGTGAACGAGGAAGACTTCTTCGGGCATTCTCTG
GAGCTGCACGATGACTGGGGCTACACAACCAAGAAGAATATTTGTGAGAG
GGTTGAGAAGCAGGGAAGGAGGGAGGGAGAGGATTACAGCTGTGACCATG
TTTTGCGGCTTGAGGAGCTGGGAGGGGACGGGAGTGAGAATGAGCTTGGG
TGGAGCATGGCTACTACCATGGATCCACAGACGACTCGAGACTCGATCGT
GAGTTTTTTTCCGTCGGAGGAGAAGGAGAAGGGTGAGGATGGGGTTGAGG
TTGACGGTTGGATGGAGAGAGAGGAGAGACGGCTGGAGAATGAGAAGGAG
GAAGAGGAGGACGAGGACAATGACATGCGTGGAAAGCCATGGAACGATGG
GACCTCGTCGCCGTGTTTGGCTTCCTTCTTCTTCCCTCATGACGTGGTAT
CTTCTTCTTGA back to topprotein sequence of NO19G00890.1 >NO19G00890.1-protein ID=NO19G00890.1-protein|Name=NO19G00890.1|organism=Nannochloropsis oceanica|type=polypeptide|length=737bp
MEQASMDCLGTDCRARRFHSALDGGSSSSSSSSSNSNSNSSDVHHEQRHH
YQTHKSWETCGDSTLAAACDETLDEEELETFAICTVPIPCSSSSSRYSYR
ATTTMITSNHQPCRSAYYQKIGLALPPEVTLHNMKHYGRRHFLKLREAEV
QNAPDPTYEHRQIELRPDMRAQLLDWLMEVSANFFVRRRTFQAAVNYCDR
FLSTVAVVFPKEKLQLLAITSLFVSSKMEEVYPAKAQELAEATAGAFTAC
DIVTFEIELMTSLAWNLTPPTSDDWAEWYLLAFLERGIPVAASAFQRQQH
QQREQQQQQQRQQQQQQQSQQQQHLLLFQRLPTGVALRLQLLLDLALLDV
TSLHFYPSMLAAAGLYLLLPHSFHPALAFATGYQPGDRALKHCKAYLTFL
STGLFDALPPLHDQQHQHQSFWTTVVSPRAQAAQVLVPMWDRHSLQNHPA
NLLPHLLGRITAISGHGDDTNLCKNSDCNIKSGDDGSSSSSSSSSMFVAA
AVAANASAAAAVAAAVLVPPSPPSTTLPPPSFLGYRSVFSGNSLMKEKED
EDEEGMDFSVDGEDEEEEGTEGEEEEEGEEEDTEANEGEVNEEDFFGHSL
ELHDDWGYTTKKNICERVEKQGRREGEDYSCDHVLRLEELGGDGSENELG
WSMATTMDPQTTRDSIVSFFPSEEKEKGEDGVEVDGWMEREERRLENEKE
EEEDEDNDMRGKPWNDGTSSPCLASFFFPHDVVSSS* back to topmRNA from alignment at chr19:301869..304149- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO19G00890.1 ID=NO19G00890.1|Name=NO19G00890.1|organism=Nannochloropsis oceanica|type=mRNA|length=2281bp|location=Sequence derived from alignment at chr19:301869..304149- (Nannochloropsis oceanica)
ATGGTAAGTTAGGCGCGGTTGAAAGGTATGTAATTGAAGTAAAGTTCATG
ACGGCATTTCTCTTTCCTTACAGGAGCAAGCAAGCATGGACTGTCTTGGC
ACCGACTGCAGGGCACGGCGTTTTCACTCCGCCCTGGACGGAGGCAGCAG
CAGTAGCAGTAGCAGTAGCAGTAACAGTAACAGTAACAGCAGTGATGTCC
ACCACGAGCAGCGTCACCATTACCAGACCCACAAGTCTTGGGAAACGTGC
GGGGACAGCACGCTGGCGGCCGCATGCGACGAGACGCTTGACGAGGAGGA
GCTCGAAACCTTTGCCATCTGTACCGTCCCCATCCCCTGCAGCAGTAGCA
GCAGCAGGTACAGCTACAGAGCCACAACGACGATGATAACAAGCAATCAC
CAACCCTGTCGCAGCGCCTACTACCAAAAAATCGGCCTGGCTCTTCCCCC
TGAGGTAACACTGCACAACATGAAGCACTACGGACGTCGGCACTTTCTGA
AATTGCGCGAGGCCGAAGTACAAAATGCTCCCGACCCCACGTACGAACAT
CGGCAGATAGAACTTCGCCCCGACATGCGTGCCCAGCTCCTGGACTGGCT
CATGGAAGTAAGTGCCAATTTCTTCGTCCGTCGCCGTACCTTTCAAGCAG
CCGTCAACTACTGCGATCGGTTCCTGTCAACCGTTGCCGTTGTCTTTCCC
AAGGAGAAGCTGCAGCTGCTGGCAATTACCTCCCTCTTTGTATCCTCAAA
AATGGAAGAAGTTTACCCAGCCAAAGCCCAAGAACTCGCCGAAGCCACCG
CCGGGGCATTCACCGCCTGCGATATCGTTACATTTGAGATTGAGCTGATG
ACAAGCCTAGCCTGGAATCTCACCCCCCCAACGTCCGACGACTGGGCCGA
ATGGTATCTCCTCGCTTTCCTCGAACGCGGTATTCCCGTTGCAGCGTCAG
CTTTTCAACGCCAACAACATCAACAGCGTGAACAGCAGCAGCAGCAACAG
AGGCAACAGCAGCAGCAACAGCAATCCCAGCAGCAACAGCACCTCCTTCT
TTTTCAACGCCTCCCCACTGGGGTTGCCCTACGGCTGCAGCTGCTGTTGG
ACTTAGCCCTGCTTGACGTTACCTCCCTCCACTTCTATCCCTCTATGCTG
GCAGCCGCCGGGCTCTATCTCCTCCTCCCCCACAGTTTTCACCCCGCGCT
GGCCTTCGCGACGGGCTACCAACCCGGAGACCGTGCGCTCAAGCACTGTA
AGGCCTACCTCACCTTCCTCTCAACCGGTCTGTTCGACGCTCTCCCCCCC
CTTCACGACCAACAGCACCAACACCAATCTTTTTGGACGACGGTAGTCTC
CCCCCGGGCTCAAGCCGCGCAGGTCTTGGTGCCGATGTGGGACAGACACA
GTCTTCAAAACCACCCGGCTAACCTCCTCCCCCACCTTCTCGGGCGCATC
ACGGCCATCTCTGGTCACGGCGATGATACCAATTTGTGTAAAAACAGCGA
CTGCAATATCAAGAGCGGCGATGATGGCAGCAGCAGCAGCAGCAGCAGCA
GCAGCATGTTCGTCGCTGCTGCCGTGGCTGCTAATGCCTCTGCTGCAGCT
GCTGTCGCTGCTGCTGTATTGGTACCACCCTCTCCCCCATCGACGACGCT
GCCTCCGCCTTCGTTTTTAGGATACCGCTCTGTTTTTTCAGGGAATTCAC
TAATGAAAGAAAAGGAGGACGAGGACGAGGAAGGGATGGATTTTTCGGTA
GATGGCGAGGATGAGGAAGAGGAAGGGACTGAGGGAGAAGAGGAGGAGGA
AGGGGAAGAGGAGGATACGGAAGCGAATGAGGGGGAAGTGAACGAGGAAG
ACTTCTTCGGGCATTCTCTGGAGCTGCACGATGACTGGGGCTACACAACC
AAGAAGAATATTTGTGAGAGGGTTGAGAAGCAGGGAAGGAGGGAGGGAGA
GGATTACAGCTGTGACCATGTTTTGCGGCTTGAGGAGCTGGGAGGGGACG
GGAGTGAGAATGAGCTTGGGTGGAGCATGGCTACTACCATGGATCCACAG
ACGACTCGAGACTCGATCGTGAGTTTTTTTCCGTCGGAGGAGAAGGAGAA
GGGTGAGGATGGGGTTGAGGTTGACGGTTGGATGGAGAGAGAGGAGAGAC
GGCTGGAGAATGAGAAGGAGGAAGAGGAGGACGAGGACAATGACATGCGT
GGAAAGCCATGGAACGATGGGACCTCGTCGCCGTGTTTGGCTTCCTTCTT
CTTCCCTCATGACGTGGTATCTTCTTCTTGA back to topCoding sequence (CDS) from alignment at chr19:301869..304149- >NO19G00890.1 ID=NO19G00890.1|Name=NO19G00890.1|organism=Nannochloropsis oceanica|type=CDS|length=2211bp|location=Sequence derived from alignment at chr19:301869..304149- (Nannochloropsis oceanica)
ATGGAGCAAGCAAGCATGGACTGTCTTGGCACCGACTGCAGGGCACGGCG
TTTTCACTCCGCCCTGGACGGAGGCAGCAGCAGTAGCAGTAGCAGTAGCA
GTAACAGTAACAGTAACAGCAGTGATGTCCACCACGAGCAGCGTCACCAT
TACCAGACCCACAAGTCTTGGGAAACGTGCGGGGACAGCACGCTGGCGGC
CGCATGCGACGAGACGCTTGACGAGGAGGAGCTCGAAACCTTTGCCATCT
GTACCGTCCCCATCCCCTGCAGCAGTAGCAGCAGCAGGTACAGCTACAGA
GCCACAACGACGATGATAACAAGCAATCACCAACCCTGTCGCAGCGCCTA
CTACCAAAAAATCGGCCTGGCTCTTCCCCCTGAGGTAACACTGCACAACA
TGAAGCACTACGGACGTCGGCACTTTCTGAAATTGCGCGAGGCCGAAGTA
CAAAATGCTCCCGACCCCACGTACGAACATCGGCAGATAGAACTTCGCCC
CGACATGCGTGCCCAGCTCCTGGACTGGCTCATGGAAGTAAGTGCCAATT
TCTTCGTCCGTCGCCGTACCTTTCAAGCAGCCGTCAACTACTGCGATCGG
TTCCTGTCAACCGTTGCCGTTGTCTTTCCCAAGGAGAAGCTGCAGCTGCT
GGCAATTACCTCCCTCTTTGTATCCTCAAAAATGGAAGAAGTTTACCCAG
CCAAAGCCCAAGAACTCGCCGAAGCCACCGCCGGGGCATTCACCGCCTGC
GATATCGTTACATTTGAGATTGAGCTGATGACAAGCCTAGCCTGGAATCT
CACCCCCCCAACGTCCGACGACTGGGCCGAATGGTATCTCCTCGCTTTCC
TCGAACGCGGTATTCCCGTTGCAGCGTCAGCTTTTCAACGCCAACAACAT
CAACAGCGTGAACAGCAGCAGCAGCAACAGAGGCAACAGCAGCAGCAACA
GCAATCCCAGCAGCAACAGCACCTCCTTCTTTTTCAACGCCTCCCCACTG
GGGTTGCCCTACGGCTGCAGCTGCTGTTGGACTTAGCCCTGCTTGACGTT
ACCTCCCTCCACTTCTATCCCTCTATGCTGGCAGCCGCCGGGCTCTATCT
CCTCCTCCCCCACAGTTTTCACCCCGCGCTGGCCTTCGCGACGGGCTACC
AACCCGGAGACCGTGCGCTCAAGCACTGTAAGGCCTACCTCACCTTCCTC
TCAACCGGTCTGTTCGACGCTCTCCCCCCCCTTCACGACCAACAGCACCA
ACACCAATCTTTTTGGACGACGGTAGTCTCCCCCCGGGCTCAAGCCGCGC
AGGTCTTGGTGCCGATGTGGGACAGACACAGTCTTCAAAACCACCCGGCT
AACCTCCTCCCCCACCTTCTCGGGCGCATCACGGCCATCTCTGGTCACGG
CGATGATACCAATTTGTGTAAAAACAGCGACTGCAATATCAAGAGCGGCG
ATGATGGCAGCAGCAGCAGCAGCAGCAGCAGCAGCATGTTCGTCGCTGCT
GCCGTGGCTGCTAATGCCTCTGCTGCAGCTGCTGTCGCTGCTGCTGTATT
GGTACCACCCTCTCCCCCATCGACGACGCTGCCTCCGCCTTCGTTTTTAG
GATACCGCTCTGTTTTTTCAGGGAATTCACTAATGAAAGAAAAGGAGGAC
GAGGACGAGGAAGGGATGGATTTTTCGGTAGATGGCGAGGATGAGGAAGA
GGAAGGGACTGAGGGAGAAGAGGAGGAGGAAGGGGAAGAGGAGGATACGG
AAGCGAATGAGGGGGAAGTGAACGAGGAAGACTTCTTCGGGCATTCTCTG
GAGCTGCACGATGACTGGGGCTACACAACCAAGAAGAATATTTGTGAGAG
GGTTGAGAAGCAGGGAAGGAGGGAGGGAGAGGATTACAGCTGTGACCATG
TTTTGCGGCTTGAGGAGCTGGGAGGGGACGGGAGTGAGAATGAGCTTGGG
TGGAGCATGGCTACTACCATGGATCCACAGACGACTCGAGACTCGATCGT
GAGTTTTTTTCCGTCGGAGGAGAAGGAGAAGGGTGAGGATGGGGTTGAGG
TTGACGGTTGGATGGAGAGAGAGGAGAGACGGCTGGAGAATGAGAAGGAG
GAAGAGGAGGACGAGGACAATGACATGCGTGGAAAGCCATGGAACGATGG
GACCTCGTCGCCGTGTTTGGCTTCCTTCTTCTTCCCTCATGACGTGGTAT
CTTCTTCTTGA back to top
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