NO19G00880.2, NO19G00880.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO19G00880.2
Unique NameNO19G00880.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2024
Alignment locationchr19:298005..300220 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr19genomechr19:298005..300220 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO19G00880.2 vs.
Match: EWM23599.1 (Ribosomal L11 methyltransferase, PrmA [Nannochloropsis gaditana])

HSP 1 Score: 548.9 bits (1413), Expect = 1.100e-152
Identity = 269/347 (77.52%), Postives = 308/347 (88.76%), Query Frame = 0 
Query:    1 MLTDHRRMFAYHEAISKNAEAFKGKTVVDVGTGTGVLAVWSAKAGASRVLAVEFTDMAKMAKVIVARNGVSNIVEVQQGSAEEMDGVQPGSVDIIVSEWMGYFLLRESMLDTVVRVREKYLKKEGGHMFPSHATMFWSLVEDERERQVKAQEYHQAITDWHAFTYETKQFYELDMAGLSSQYEEEQRQYYLLSSAWAELRAEQVVGTPVPILSLDLKTCTFEDIKGVPKTPFKFIIPKDRTNGEGRVHVSGFAGWFTTDFFGNDPA-KPLPCPTTLSTAPDMGYTHWGQQVFHLVKGLELNPGDVLEGTVSMGRQEENARLYEVEVAFYVVREGLASEYVAHKYQMP 347
            MLTDHRRMFAYHEAI KN+  F+GKTVVDVGTGTGVLAVWSAKAGA RV+AVE+TDMAKMA+VIVA+NGV  IVEVQQGSAEEM+ V+PGSVDIIVSEWMGYFLLRESMLD++VRVREKYLKKEGGHMFPSHATM+W+L+EDERERQVK QEY QA+ DW  F+++TK+FY+LDMAGL++QYEEEQ++YYLLSS+WAELRAEQVV  PV I  LDLK+CTFE+IKGVP+TPF+F+IP +  N    V+VSGFAGWFTTDFFGN P  +PLP PTTLSTAPD+GYTHWGQQVFH+V GLEL PGDV+EGTV++ RQ ENARLY VEVAF V R G+ S+ V HKYQMP
Sbjct:   69 MLTDHRRMFAYHEAIMKNSSVFEGKTVVDVGTGTGVLAVWSAKAGAKRVVAVEYTDMAKMARVIVAQNGVDAIVEVQQGSAEEMEEVEPGSVDIIVSEWMGYFLLRESMLDSLVRVREKYLKKEGGHMFPSHATMYWALIEDERERQVKEQEYQQALEDWQTFSHQTKEFYDLDMAGLTAQYEEEQKEYYLLSSSWAELRAEQVVAEPVVIRRLDLKSCTFEEIKGVPETPFQFVIPPNDNNEP--VYVSGFAGWFTTDFFGNAPGIEPLPHPTTLSTAPDVGYTHWGQQVFHVVVGLELFPGDVVEGTVTLVRQVENARLYHVEVAFQVRRGGVTSKLVRHKYQMP 413
The following BLAST results are available for this feature:
BLAST of NO19G00880.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23599.11.100e-15277.52Ribosomal L11 methyltransferase, PrmA [Nannochloro... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO19G00880NO19G00880Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO19G00880.2NO19G00880.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO19G00880.2.cds1NO19G00880.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G00880.2.cds2NO19G00880.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO19G00880.2 ID=NO19G00880.2|Name=NO19G00880.2|organism=Nannochloropsis oceanica|type=mRNA|length=2024bp
ACACAGAGGCAACCAATGGAGGGAATCACCACCAACGGTGCCAGCTGCTG
CAGAAGCCATAGCAACAATAGCAACAGCAGCAGCGGCGGCGGCGACGACG
ACAGTCATGGGGCCGGAAAGCAGAAGGAAGGCTCGGAGGCAGCAGCATGC
GCGGCAGCAGGCACGGGAGGCAGCAACATGAAGGACGACTCGATCATCAT
GAAGGGGGACGCCGGGGCCAAGGCCAAGGATTTTGCCGAATATTTCTGCT
CCTACGCCTTCTTATATCACCAGGTAAGCCATGGGAGCGAGGTCAAAATC
CCATTCATGCCTCCCTTCCTCCCTCCGTTCCGCCAGCGAGGGCGTGTGCC
CCCCCTTATTTCCTCATCCCCTCTCTTCCTCCCTGTAGAAACAAATGCTC
ACAGACCACCGGCGGATGTTTGCATATCATGAGGCTATTAGCAAAAACGC
AGAGGCCTTCAAGGGGAAGACCGTGGTGGATGTCGGCACGGGGACGGGTG
TTCTGGCTGTCTGGAGTGCCAAGGCAGGGGCGTCCCGGGTGCTGGCAGTG
GAATTTACGGACATGGCTAAAATGGCCAAGGTAATCGTAGCCCGCAACGG
CGTGAGCAACATCGTGGAAGTTCAGCAGGGCTCGGCGGAGGAGATGGACG
GGGTACAGCCAGGGTCGGTGGACATCATAGTCAGCGAGTGGATGGGATAC
TTCCTGCTAAGAGAAAGCATGCTCGACACGGTGGTGCGCGTTCGTGAGAA
GTACCTGAAGAAAGAGGGAGGGCACATGTTTCCGAGCCACGCGACCATGT
TCTGGTCCCTGGTCGAGGACGAACGGGAGCGGCAAGTTAAGGCGCAGGAA
TACCACCAAGCCATCACTGACTGGCACGCCTTCACGTACGAAACGAAACA
ATTCTACGAGCTCGACATGGCCGGCCTCAGCTCCCAATACGAGGAGGAAC
AAAGACAGTACTACCTTCTTTCTAGCGCATGGGCCGAGTTGCGCGCGGAG
CAAGTCGTCGGGACCCCCGTTCCGATCCTTTCGCTCGACCTGAAGACCTG
TACATTTGAAGACATCAAGGGCGTCCCAAAAACGCCATTCAAGTTCATCA
TTCCGAAAGACAGGACCAACGGCGAAGGCCGTGTGCATGTCAGTGGCTTT
GCCGGGTGGTTTACCACAGACTTTTTTGGGAACGACCCTGCAAAGCCCTT
GCCCTGCCCGACCACATTAAGCACGGCGCCGGACATGGGATACACGCATT
GGGGGCAGCAGGTGTTTCACCTCGTGAAGGGGTTGGAGTTGAACCCGGGG
GACGTACTGGAGGGGACTGTGAGCATGGGAAGGCAGGAGGAGAACGCCCG
GTTGTATGAGGTGGAGGTGGCGTTTTACGTGGTGAGGGAGGGATTGGCGT
CTGAGTATGTGGCACACAAGTACCAGATGCCATGAGGTGGGAGGAAGGGA
GAATGAGAGATGGAAGGAGGAAATGTCTGTTTATAGATAGAAAGTAGAGC
AGAAAGAGAGAGAGGGATGGAGAGAGAGCATACATTGCGCGACTGTATCC
GTCTCGAAAAATGAAAAATTTGATGAGCCGGCGGCAATGTCATTGAAAAT
GAAGAGGAAGAGGACATTGAGAGGGGGAGGGACGAAGGGTAGAAAGGCAG
AGAGAGACGGGAAAGAGGAAAAGAAACAGGACTTGCCGACACTGGGAAAC
ATGGAGGAAAGCCGCACTGTACCAGATCCGACCCGTCCGCTTTGCGTGAG
CTCTTCCGTGCTCGTGTTTGTTTAGATACTGAGTTAGAAGGGGAGAGAGG
GAGAAGATGGATGAGCACAGCGAGCGAAAGAAAGCAGAAAGAAACCACAG
TACCTTGTCCCTTGATTGTGTGCATGTGCCACTGCCCCCTTTTCTCTACC
GACGTGACGATAGAAGATGAAGGGGATAAGAAAGGAAAAGACTTATGAGA
ATTAGATTATGATACTTCAAGAAATAGAGCCAGAAGAATGACGACGTCCG
TCAGAAGAAGAAAATAAATGTTAC
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protein sequence of NO19G00880.2

>NO19G00880.2-protein ID=NO19G00880.2-protein|Name=NO19G00880.2|organism=Nannochloropsis oceanica|type=polypeptide|length=347bp
MLTDHRRMFAYHEAISKNAEAFKGKTVVDVGTGTGVLAVWSAKAGASRVL
AVEFTDMAKMAKVIVARNGVSNIVEVQQGSAEEMDGVQPGSVDIIVSEWM
GYFLLRESMLDTVVRVREKYLKKEGGHMFPSHATMFWSLVEDERERQVKA
QEYHQAITDWHAFTYETKQFYELDMAGLSSQYEEEQRQYYLLSSAWAELR
AEQVVGTPVPILSLDLKTCTFEDIKGVPKTPFKFIIPKDRTNGEGRVHVS
GFAGWFTTDFFGNDPAKPLPCPTTLSTAPDMGYTHWGQQVFHLVKGLELN
PGDVLEGTVSMGRQEENARLYEVEVAFYVVREGLASEYVAHKYQMP*
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mRNA from alignment at chr19:298005..300220+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO19G00880.2 ID=NO19G00880.2|Name=NO19G00880.2|organism=Nannochloropsis oceanica|type=mRNA|length=2216bp|location=Sequence derived from alignment at chr19:298005..300220+ (Nannochloropsis oceanica)
ACACAGAGGCAACCAATGGAGGGAATCACCACCAACGGTGCCAGCTGCTG
CAGAAGCCATAGCAACAATAGCAACAGCAGCAGCGGCGGCGGCGACGACG
ACAGTCATGGGGCCGGAAAGCAGAAGGAAGGCTCGGAGGCAGCAGCATGC
GCGGCAGCAGGCACGGGAGGCAGCAACATGAAGGACGACTCGATCATCAT
GAAGGGGGACGCCGGGGCCAAGGCCAAGGATTTTGCCGAATATTTCTGCT
CCTACGCCTTCTTATATCACCAGGTAAGCCATGGGAGCGAGGTCAAAATC
CCATTCATGCCTCCCTTCCTCCCTCCGTTCCGCCAGCGAGGGCGTGTGCC
CCCCCTTATTTCCTCATCCCCTCTCTTCCTCCCTGTAGAAACAAATGCTC
ACAGACCACCGGCGGATGTTTGCATATCATGAGGCTATTAGCAAAAACGC
AGAGGCCTTCAAGGGGAAGACCGTGGTGGATGTCGGCACGGGGACGGGTG
TTCTGGCTGTCTGGAGTGCCAAGGCAGGGGCGTCCCGGGTGCTGGCAGTG
GAATTTACGGGTAAATGAGGGAGAGAATGAGGGCAAACTTATCCTGCAGT
GCTGACTTTCGAAGTGATCACTCTTTTATCTACGTCTGTCAAGACGTTGT
CTTGTTTCTCTTGTCAGAGAGTCACGCCAGCAACGCACAGACCTTACCCA
CCCCTCCCTATCTCTCTCCCTCCCTCCCTCCCTTCCTTCCCCCTCCCCTC
AGACATGGCTAAAATGGCCAAGGTAATCGTAGCCCGCAACGGCGTGAGCA
ACATCGTGGAAGTTCAGCAGGGCTCGGCGGAGGAGATGGACGGGGTACAG
CCAGGGTCGGTGGACATCATAGTCAGCGAGTGGATGGGATACTTCCTGCT
AAGAGAAAGCATGCTCGACACGGTGGTGCGCGTTCGTGAGAAGTACCTGA
AGAAAGAGGGAGGGCACATGTTTCCGAGCCACGCGACCATGTTCTGGTCC
CTGGTCGAGGACGAACGGGAGCGGCAAGTTAAGGCGCAGGAATACCACCA
AGCCATCACTGACTGGCACGCCTTCACGTACGAAACGAAACAATTCTACG
AGCTCGACATGGCCGGCCTCAGCTCCCAATACGAGGAGGAACAAAGACAG
TACTACCTTCTTTCTAGCGCATGGGCCGAGTTGCGCGCGGAGCAAGTCGT
CGGGACCCCCGTTCCGATCCTTTCGCTCGACCTGAAGACCTGTACATTTG
AAGACATCAAGGGCGTCCCAAAAACGCCATTCAAGTTCATCATTCCGAAA
GACAGGACCAACGGCGAAGGCCGTGTGCATGTCAGTGGCTTTGCCGGGTG
GTTTACCACAGACTTTTTTGGGAACGACCCTGCAAAGCCCTTGCCCTGCC
CGACCACATTAAGCACGGCGCCGGACATGGGATACACGCATTGGGGGCAG
CAGGTGTTTCACCTCGTGAAGGGGTTGGAGTTGAACCCGGGGGACGTACT
GGAGGGGACTGTGAGCATGGGAAGGCAGGAGGAGAACGCCCGGTTGTATG
AGGTGGAGGTGGCGTTTTACGTGGTGAGGGAGGGATTGGCGTCTGAGTAT
GTGGCACACAAGTACCAGATGCCATGAGGTGGGAGGAAGGGAGAATGAGA
GATGGAAGGAGGAAATGTCTGTTTATAGATAGAAAGTAGAGCAGAAAGAG
AGAGAGGGATGGAGAGAGAGCATACATTGCGCGACTGTATCCGTCTCGAA
AAATGAAAAATTTGATGAGCCGGCGGCAATGTCATTGAAAATGAAGAGGA
AGAGGACATTGAGAGGGGGAGGGACGAAGGGTAGAAAGGCAGAGAGAGAC
GGGAAAGAGGAAAAGAAACAGGACTTGCCGACACTGGGAAACATGGAGGA
AAGCCGCACTGTACCAGATCCGACCCGTCCGCTTTGCGTGAGCTCTTCCG
TGCTCGTGTTTGTTTAGATACTGAGTTAGAAGGGGAGAGAGGGAGAAGAT
GGATGAGCACAGCGAGCGAAAGAAAGCAGAAAGAAACCACAGTACCTTGT
CCCTTGATTGTGTGCATGTGCCACTGCCCCCTTTTCTCTACCGACGTGAC
GATAGAAGATGAAGGGGATAAGAAAGGAAAAGACTTATGAGAATTAGATT
ATGATACTTCAAGAAATAGAGCCAGAAGAATGACGACGTCCGTCAGAAGA
AGAAAATAAATGTTAC
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Coding sequence (CDS) from alignment at chr19:298005..300220+

>NO19G00880.2 ID=NO19G00880.2|Name=NO19G00880.2|organism=Nannochloropsis oceanica|type=CDS|length=1041bp|location=Sequence derived from alignment at chr19:298005..300220+ (Nannochloropsis oceanica)
ATGCTCACAGACCACCGGCGGATGTTTGCATATCATGAGGCTATTAGCAA
AAACGCAGAGGCCTTCAAGGGGAAGACCGTGGTGGATGTCGGCACGGGGA
CGGGTGTTCTGGCTGTCTGGAGTGCCAAGGCAGGGGCGTCCCGGGTGCTG
GCAGTGGAATTTACGGACATGGCTAAAATGGCCAAGGTAATCGTAGCCCG
CAACGGCGTGAGCAACATCGTGGAAGTTCAGCAGGGCTCGGCGGAGGAGA
TGGACGGGGTACAGCCAGGGTCGGTGGACATCATAGTCAGCGAGTGGATG
GGATACTTCCTGCTAAGAGAAAGCATGCTCGACACGGTGGTGCGCGTTCG
TGAGAAGTACCTGAAGAAAGAGGGAGGGCACATGTTTCCGAGCCACGCGA
CCATGTTCTGGTCCCTGGTCGAGGACGAACGGGAGCGGCAAGTTAAGGCG
CAGGAATACCACCAAGCCATCACTGACTGGCACGCCTTCACGTACGAAAC
GAAACAATTCTACGAGCTCGACATGGCCGGCCTCAGCTCCCAATACGAGG
AGGAACAAAGACAGTACTACCTTCTTTCTAGCGCATGGGCCGAGTTGCGC
GCGGAGCAAGTCGTCGGGACCCCCGTTCCGATCCTTTCGCTCGACCTGAA
GACCTGTACATTTGAAGACATCAAGGGCGTCCCAAAAACGCCATTCAAGT
TCATCATTCCGAAAGACAGGACCAACGGCGAAGGCCGTGTGCATGTCAGT
GGCTTTGCCGGGTGGTTTACCACAGACTTTTTTGGGAACGACCCTGCAAA
GCCCTTGCCCTGCCCGACCACATTAAGCACGGCGCCGGACATGGGATACA
CGCATTGGGGGCAGCAGGTGTTTCACCTCGTGAAGGGGTTGGAGTTGAAC
CCGGGGGACGTACTGGAGGGGACTGTGAGCATGGGAAGGCAGGAGGAGAA
CGCCCGGTTGTATGAGGTGGAGGTGGCGTTTTACGTGGTGAGGGAGGGAT
TGGCGTCTGAGTATGTGGCACACAAGTACCAGATGCCATGA
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Synonyms
Publications