NO19G00880.1, NO19G00880.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO19G00880.1
Unique NameNO19G00880.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1909
Alignment locationchr19:298005..300220 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr19genomechr19:298005..300220 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO19G00880.1 vs.
Match: EWM23599.1 (Ribosomal L11 methyltransferase, PrmA [Nannochloropsis gaditana])

HSP 1 Score: 606.7 bits (1563), Expect = 5.700e-170
Identity = 313/435 (71.95%), Postives = 357/435 (82.07%), Query Frame = 0 
Query:    1 MEGITTNGASCCRSHSNNSNSSSGGGDDDSHGAGKQKEGSEAAACAAAGTGGSNMKDDSIIMKGDAGAKAKDFAEYFCSYAFLYHQKQMLTDHRRMFAYHEAISKNAEAFKGKTVVDVGTGTGVLAVWSAKAGASRVLAVEFTDMAKMAKVIVARNGVSNIVEVQQGSAEEMDGVQPGSVDIIVSEWMGYFLLRESMLDTVVRVREKYLKKEGGHMFPSHATMFWSLVEDERERQVKAQEYHQAITDWHAFTYETKQFYELDMAGLSSQYEEEQRQYYLLSSAWAELRAEQVVGTPVPILSLDLKTCTFEDIKGVPKTPFKFIIPKDRTNGEGRVHVSGFAGWFTTDFFGNDPA-KPLPCPTTLSTAPDMGYTHWGQQVFHLVKGLELNPGDVLEGTVSMGRQEENARLYEVEVAFYVVREGLASEYVAHKYQMP 435
            ME +  NG S         N  +GG  D       +K GS  +           MKDDS IMKGDAGAKAKDFAEYFCSYA+LYHQKQMLTDHRRMFAYHEAI KN+  F+GKTVVDVGTGTGVLAVWSAKAGA RV+AVE+TDMAKMA+VIVA+NGV  IVEVQQGSAEEM+ V+PGSVDIIVSEWMGYFLLRESMLD++VRVREKYLKKEGGHMFPSHATM+W+L+EDERERQVK QEY QA+ DW  F+++TK+FY+LDMAGL++QYEEEQ++YYLLSS+WAELRAEQVV  PV I  LDLK+CTFE+IKGVP+TPF+F+IP +  N    V+VSGFAGWFTTDFFGN P  +PLP PTTLSTAPD+GYTHWGQQVFH+V GLEL PGDV+EGTV++ RQ ENARLY VEVAF V R G+ S+ V HKYQMP
Sbjct:    1 MENLAPNGTS---------NGDNGGKYDSEIEDMTRKTGSIGS-----------MKDDSTIMKGDAGAKAKDFAEYFCSYAYLYHQKQMLTDHRRMFAYHEAIMKNSSVFEGKTVVDVGTGTGVLAVWSAKAGAKRVVAVEYTDMAKMARVIVAQNGVDAIVEVQQGSAEEMEEVEPGSVDIIVSEWMGYFLLRESMLDSLVRVREKYLKKEGGHMFPSHATMYWALIEDERERQVKEQEYQQALEDWQTFSHQTKEFYDLDMAGLTAQYEEEQKEYYLLSSSWAELRAEQVVAEPVVIRRLDLKSCTFEEIKGVPETPFQFVIPPNDNNEP--VYVSGFAGWFTTDFFGNAPGIEPLPHPTTLSTAPDVGYTHWGQQVFHVVVGLELFPGDVVEGTVTLVRQVENARLYHVEVAFQVRRGGVTSKLVRHKYQMP 413
The following BLAST results are available for this feature:
BLAST of NO19G00880.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23599.15.700e-17071.95Ribosomal L11 methyltransferase, PrmA [Nannochloro... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO19G00880NO19G00880Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO19G00880.1NO19G00880.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO19G00880.1.cds1NO19G00880.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G00880.1.cds2NO19G00880.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G00880.1.cds3NO19G00880.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO19G00880.1 ID=NO19G00880.1|Name=NO19G00880.1|organism=Nannochloropsis oceanica|type=mRNA|length=1909bp
ACACAGAGGCAACCAATGGAGGGAATCACCACCAACGGTGCCAGCTGCTG
CAGAAGCCATAGCAACAATAGCAACAGCAGCAGCGGCGGCGGCGACGACG
ACAGTCATGGGGCCGGAAAGCAGAAGGAAGGCTCGGAGGCAGCAGCATGC
GCGGCAGCAGGCACGGGAGGCAGCAACATGAAGGACGACTCGATCATCAT
GAAGGGGGACGCCGGGGCCAAGGCCAAGGATTTTGCCGAATATTTCTGCT
CCTACGCCTTCTTATATCACCAGAAACAAATGCTCACAGACCACCGGCGG
ATGTTTGCATATCATGAGGCTATTAGCAAAAACGCAGAGGCCTTCAAGGG
GAAGACCGTGGTGGATGTCGGCACGGGGACGGGTGTTCTGGCTGTCTGGA
GTGCCAAGGCAGGGGCGTCCCGGGTGCTGGCAGTGGAATTTACGGACATG
GCTAAAATGGCCAAGGTAATCGTAGCCCGCAACGGCGTGAGCAACATCGT
GGAAGTTCAGCAGGGCTCGGCGGAGGAGATGGACGGGGTACAGCCAGGGT
CGGTGGACATCATAGTCAGCGAGTGGATGGGATACTTCCTGCTAAGAGAA
AGCATGCTCGACACGGTGGTGCGCGTTCGTGAGAAGTACCTGAAGAAAGA
GGGAGGGCACATGTTTCCGAGCCACGCGACCATGTTCTGGTCCCTGGTCG
AGGACGAACGGGAGCGGCAAGTTAAGGCGCAGGAATACCACCAAGCCATC
ACTGACTGGCACGCCTTCACGTACGAAACGAAACAATTCTACGAGCTCGA
CATGGCCGGCCTCAGCTCCCAATACGAGGAGGAACAAAGACAGTACTACC
TTCTTTCTAGCGCATGGGCCGAGTTGCGCGCGGAGCAAGTCGTCGGGACC
CCCGTTCCGATCCTTTCGCTCGACCTGAAGACCTGTACATTTGAAGACAT
CAAGGGCGTCCCAAAAACGCCATTCAAGTTCATCATTCCGAAAGACAGGA
CCAACGGCGAAGGCCGTGTGCATGTCAGTGGCTTTGCCGGGTGGTTTACC
ACAGACTTTTTTGGGAACGACCCTGCAAAGCCCTTGCCCTGCCCGACCAC
ATTAAGCACGGCGCCGGACATGGGATACACGCATTGGGGGCAGCAGGTGT
TTCACCTCGTGAAGGGGTTGGAGTTGAACCCGGGGGACGTACTGGAGGGG
ACTGTGAGCATGGGAAGGCAGGAGGAGAACGCCCGGTTGTATGAGGTGGA
GGTGGCGTTTTACGTGGTGAGGGAGGGATTGGCGTCTGAGTATGTGGCAC
ACAAGTACCAGATGCCATGAGGTGGGAGGAAGGGAGAATGAGAGATGGAA
GGAGGAAATGTCTGTTTATAGATAGAAAGTAGAGCAGAAAGAGAGAGAGG
GATGGAGAGAGAGCATACATTGCGCGACTGTATCCGTCTCGAAAAATGAA
AAATTTGATGAGCCGGCGGCAATGTCATTGAAAATGAAGAGGAAGAGGAC
ATTGAGAGGGGGAGGGACGAAGGGTAGAAAGGCAGAGAGAGACGGGAAAG
AGGAAAAGAAACAGGACTTGCCGACACTGGGAAACATGGAGGAAAGCCGC
ACTGTACCAGATCCGACCCGTCCGCTTTGCGTGAGCTCTTCCGTGCTCGT
GTTTGTTTAGATACTGAGTTAGAAGGGGAGAGAGGGAGAAGATGGATGAG
CACAGCGAGCGAAAGAAAGCAGAAAGAAACCACAGTACCTTGTCCCTTGA
TTGTGTGCATGTGCCACTGCCCCCTTTTCTCTACCGACGTGACGATAGAA
GATGAAGGGGATAAGAAAGGAAAAGACTTATGAGAATTAGATTATGATAC
TTCAAGAAATAGAGCCAGAAGAATGACGACGTCCGTCAGAAGAAGAAAAT
AAATGTTAC
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protein sequence of NO19G00880.1

>NO19G00880.1-protein ID=NO19G00880.1-protein|Name=NO19G00880.1|organism=Nannochloropsis oceanica|type=polypeptide|length=435bp
MEGITTNGASCCRSHSNNSNSSSGGGDDDSHGAGKQKEGSEAAACAAAGT
GGSNMKDDSIIMKGDAGAKAKDFAEYFCSYAFLYHQKQMLTDHRRMFAYH
EAISKNAEAFKGKTVVDVGTGTGVLAVWSAKAGASRVLAVEFTDMAKMAK
VIVARNGVSNIVEVQQGSAEEMDGVQPGSVDIIVSEWMGYFLLRESMLDT
VVRVREKYLKKEGGHMFPSHATMFWSLVEDERERQVKAQEYHQAITDWHA
FTYETKQFYELDMAGLSSQYEEEQRQYYLLSSAWAELRAEQVVGTPVPIL
SLDLKTCTFEDIKGVPKTPFKFIIPKDRTNGEGRVHVSGFAGWFTTDFFG
NDPAKPLPCPTTLSTAPDMGYTHWGQQVFHLVKGLELNPGDVLEGTVSMG
RQEENARLYEVEVAFYVVREGLASEYVAHKYQMP*
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mRNA from alignment at chr19:298005..300220+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO19G00880.1 ID=NO19G00880.1|Name=NO19G00880.1|organism=Nannochloropsis oceanica|type=mRNA|length=2216bp|location=Sequence derived from alignment at chr19:298005..300220+ (Nannochloropsis oceanica)
ACACAGAGGCAACCAATGGAGGGAATCACCACCAACGGTGCCAGCTGCTG
CAGAAGCCATAGCAACAATAGCAACAGCAGCAGCGGCGGCGGCGACGACG
ACAGTCATGGGGCCGGAAAGCAGAAGGAAGGCTCGGAGGCAGCAGCATGC
GCGGCAGCAGGCACGGGAGGCAGCAACATGAAGGACGACTCGATCATCAT
GAAGGGGGACGCCGGGGCCAAGGCCAAGGATTTTGCCGAATATTTCTGCT
CCTACGCCTTCTTATATCACCAGGTAAGCCATGGGAGCGAGGTCAAAATC
CCATTCATGCCTCCCTTCCTCCCTCCGTTCCGCCAGCGAGGGCGTGTGCC
CCCCCTTATTTCCTCATCCCCTCTCTTCCTCCCTGTAGAAACAAATGCTC
ACAGACCACCGGCGGATGTTTGCATATCATGAGGCTATTAGCAAAAACGC
AGAGGCCTTCAAGGGGAAGACCGTGGTGGATGTCGGCACGGGGACGGGTG
TTCTGGCTGTCTGGAGTGCCAAGGCAGGGGCGTCCCGGGTGCTGGCAGTG
GAATTTACGGGTAAATGAGGGAGAGAATGAGGGCAAACTTATCCTGCAGT
GCTGACTTTCGAAGTGATCACTCTTTTATCTACGTCTGTCAAGACGTTGT
CTTGTTTCTCTTGTCAGAGAGTCACGCCAGCAACGCACAGACCTTACCCA
CCCCTCCCTATCTCTCTCCCTCCCTCCCTCCCTTCCTTCCCCCTCCCCTC
AGACATGGCTAAAATGGCCAAGGTAATCGTAGCCCGCAACGGCGTGAGCA
ACATCGTGGAAGTTCAGCAGGGCTCGGCGGAGGAGATGGACGGGGTACAG
CCAGGGTCGGTGGACATCATAGTCAGCGAGTGGATGGGATACTTCCTGCT
AAGAGAAAGCATGCTCGACACGGTGGTGCGCGTTCGTGAGAAGTACCTGA
AGAAAGAGGGAGGGCACATGTTTCCGAGCCACGCGACCATGTTCTGGTCC
CTGGTCGAGGACGAACGGGAGCGGCAAGTTAAGGCGCAGGAATACCACCA
AGCCATCACTGACTGGCACGCCTTCACGTACGAAACGAAACAATTCTACG
AGCTCGACATGGCCGGCCTCAGCTCCCAATACGAGGAGGAACAAAGACAG
TACTACCTTCTTTCTAGCGCATGGGCCGAGTTGCGCGCGGAGCAAGTCGT
CGGGACCCCCGTTCCGATCCTTTCGCTCGACCTGAAGACCTGTACATTTG
AAGACATCAAGGGCGTCCCAAAAACGCCATTCAAGTTCATCATTCCGAAA
GACAGGACCAACGGCGAAGGCCGTGTGCATGTCAGTGGCTTTGCCGGGTG
GTTTACCACAGACTTTTTTGGGAACGACCCTGCAAAGCCCTTGCCCTGCC
CGACCACATTAAGCACGGCGCCGGACATGGGATACACGCATTGGGGGCAG
CAGGTGTTTCACCTCGTGAAGGGGTTGGAGTTGAACCCGGGGGACGTACT
GGAGGGGACTGTGAGCATGGGAAGGCAGGAGGAGAACGCCCGGTTGTATG
AGGTGGAGGTGGCGTTTTACGTGGTGAGGGAGGGATTGGCGTCTGAGTAT
GTGGCACACAAGTACCAGATGCCATGAGGTGGGAGGAAGGGAGAATGAGA
GATGGAAGGAGGAAATGTCTGTTTATAGATAGAAAGTAGAGCAGAAAGAG
AGAGAGGGATGGAGAGAGAGCATACATTGCGCGACTGTATCCGTCTCGAA
AAATGAAAAATTTGATGAGCCGGCGGCAATGTCATTGAAAATGAAGAGGA
AGAGGACATTGAGAGGGGGAGGGACGAAGGGTAGAAAGGCAGAGAGAGAC
GGGAAAGAGGAAAAGAAACAGGACTTGCCGACACTGGGAAACATGGAGGA
AAGCCGCACTGTACCAGATCCGACCCGTCCGCTTTGCGTGAGCTCTTCCG
TGCTCGTGTTTGTTTAGATACTGAGTTAGAAGGGGAGAGAGGGAGAAGAT
GGATGAGCACAGCGAGCGAAAGAAAGCAGAAAGAAACCACAGTACCTTGT
CCCTTGATTGTGTGCATGTGCCACTGCCCCCTTTTCTCTACCGACGTGAC
GATAGAAGATGAAGGGGATAAGAAAGGAAAAGACTTATGAGAATTAGATT
ATGATACTTCAAGAAATAGAGCCAGAAGAATGACGACGTCCGTCAGAAGA
AGAAAATAAATGTTAC
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Coding sequence (CDS) from alignment at chr19:298005..300220+

>NO19G00880.1 ID=NO19G00880.1|Name=NO19G00880.1|organism=Nannochloropsis oceanica|type=CDS|length=1305bp|location=Sequence derived from alignment at chr19:298005..300220+ (Nannochloropsis oceanica)
ATGGAGGGAATCACCACCAACGGTGCCAGCTGCTGCAGAAGCCATAGCAA
CAATAGCAACAGCAGCAGCGGCGGCGGCGACGACGACAGTCATGGGGCCG
GAAAGCAGAAGGAAGGCTCGGAGGCAGCAGCATGCGCGGCAGCAGGCACG
GGAGGCAGCAACATGAAGGACGACTCGATCATCATGAAGGGGGACGCCGG
GGCCAAGGCCAAGGATTTTGCCGAATATTTCTGCTCCTACGCCTTCTTAT
ATCACCAGAAACAAATGCTCACAGACCACCGGCGGATGTTTGCATATCAT
GAGGCTATTAGCAAAAACGCAGAGGCCTTCAAGGGGAAGACCGTGGTGGA
TGTCGGCACGGGGACGGGTGTTCTGGCTGTCTGGAGTGCCAAGGCAGGGG
CGTCCCGGGTGCTGGCAGTGGAATTTACGGACATGGCTAAAATGGCCAAG
GTAATCGTAGCCCGCAACGGCGTGAGCAACATCGTGGAAGTTCAGCAGGG
CTCGGCGGAGGAGATGGACGGGGTACAGCCAGGGTCGGTGGACATCATAG
TCAGCGAGTGGATGGGATACTTCCTGCTAAGAGAAAGCATGCTCGACACG
GTGGTGCGCGTTCGTGAGAAGTACCTGAAGAAAGAGGGAGGGCACATGTT
TCCGAGCCACGCGACCATGTTCTGGTCCCTGGTCGAGGACGAACGGGAGC
GGCAAGTTAAGGCGCAGGAATACCACCAAGCCATCACTGACTGGCACGCC
TTCACGTACGAAACGAAACAATTCTACGAGCTCGACATGGCCGGCCTCAG
CTCCCAATACGAGGAGGAACAAAGACAGTACTACCTTCTTTCTAGCGCAT
GGGCCGAGTTGCGCGCGGAGCAAGTCGTCGGGACCCCCGTTCCGATCCTT
TCGCTCGACCTGAAGACCTGTACATTTGAAGACATCAAGGGCGTCCCAAA
AACGCCATTCAAGTTCATCATTCCGAAAGACAGGACCAACGGCGAAGGCC
GTGTGCATGTCAGTGGCTTTGCCGGGTGGTTTACCACAGACTTTTTTGGG
AACGACCCTGCAAAGCCCTTGCCCTGCCCGACCACATTAAGCACGGCGCC
GGACATGGGATACACGCATTGGGGGCAGCAGGTGTTTCACCTCGTGAAGG
GGTTGGAGTTGAACCCGGGGGACGTACTGGAGGGGACTGTGAGCATGGGA
AGGCAGGAGGAGAACGCCCGGTTGTATGAGGTGGAGGTGGCGTTTTACGT
GGTGAGGGAGGGATTGGCGTCTGAGTATGTGGCACACAAGTACCAGATGC
CATGA
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Synonyms
Publications