NO19G00860.1, NO19G00860.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO19G00860.1
Unique NameNO19G00860.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1074
Alignment locationchr19:293009..294461 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr19genomechr19:293009..294461 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO19G00860.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO19G00860NO19G00860Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO19G00860.1NO19G00860.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO19G00860.1.cds1NO19G00860.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G00860.1.cds2NO19G00860.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G00860.1.cds3NO19G00860.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO19G00860.1 ID=NO19G00860.1|Name=NO19G00860.1|organism=Nannochloropsis oceanica|type=mRNA|length=1074bp
ATGGACTCCTCATCCTCAAGCATCTCGAGCATGTCGACGGTCTCGCATGG
TGGTGCGGCCGCGGAGGCCCAGCGGTGGGAGGAGCCGGAGCACATCAAGA
CGAGTGACGGGTACGAGCAGAGGGAGATCTGCCTTGCCTGCACGAAGGTG
GACAAGAAGCACATCACGGCCGAGGTGGTGCAGCAGTACCTGGAGACGAC
CCTCAAGAACTTTGGCCTCCCCGTCAAGTCCATCTTCTGCGCCTTCCACG
ACGGCGACGCGAAGGTAATCATATGCGTCCGTGATGCTGACCTGCGCTCC
TCGCTCTGTTTCATTCGCAGCCTGCAGCGTACCATCGCCGTATCTTTCAA
GGGAGCGAATGCAGCCCTGGCTGTACTCAAGCGGACGAAGAAGGCCGTCA
CGGGCGCCCGCCAGAGCAACGTGCAGGCGGCGTACCTGCGGGACGCCCAG
GTGTCCATCGGCGCCCCGCAGCGTGCCCTCATACAGGATAACCAGACGCG
CCCCTTTCGCCAATTGACCACGGAGCTGCAGTCGGCAGGGATCACCACCT
CTCTCGTCGTGCCCGCCTATTTGCAGCTGGTGGACGGCCTCCAGGCGTAC
AGCGAGATCGTGGTGGAGATGCCCCTCGCCGGCACCAGCTACCCCGCCAC
GTCTGTATGTAAGCCGGTGAGTGAGCTGGATGCCTCGGAGCAGAGGATCG
TAGCGCAGGCGCGCGTGGACTTGATGGAGGAGGAGGAGGAGGAGGAGGAG
GGCAAGGATGGGGGTGAAAAGGAAGATGACGAGGATGTGGAGGAACAGTG
GGCAGATATGGAGGAAGAGGTAGCGGGAGCGGGGGAGGACAGTGAGATTG
TGGAGCGGGACGAGCTGGGTTTGGATGCCTTGATGGGATTCGATTTTATG
GAGCCTAGCGATGACTTCTGGGACGAGCTCGGGGAGGTGGAGGAGTGGTG
GTTGGACGATGAGTGATTTCAATGGTATGTGGAGTATGTGTGCAGTGGAG
GATGATCGTACGTAGGCTTTTTTACTTTCCCCCCCCTTTCCTGCGAAGAA
CAAATAACCAAAGTAAGGCCCCAC
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protein sequence of NO19G00860.1

>NO19G00860.1-protein ID=NO19G00860.1-protein|Name=NO19G00860.1|organism=Nannochloropsis oceanica|type=polypeptide|length=322bp
MDSSSSSISSMSTVSHGGAAAEAQRWEEPEHIKTSDGYEQREICLACTKV
DKKHITAEVVQQYLETTLKNFGLPVKSIFCAFHDGDAKVIICVRDADLRS
SLCFIRSLQRTIAVSFKGANAALAVLKRTKKAVTGARQSNVQAAYLRDAQ
VSIGAPQRALIQDNQTRPFRQLTTELQSAGITTSLVVPAYLQLVDGLQAY
SEIVVEMPLAGTSYPATSVCKPVSELDASEQRIVAQARVDLMEEEEEEEE
GKDGGEKEDDEDVEEQWADMEEEVAGAGEDSEIVERDELGLDALMGFDFM
EPSDDFWDELGEVEEWWLDDE*
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mRNA from alignment at chr19:293009..294461-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO19G00860.1 ID=NO19G00860.1|Name=NO19G00860.1|organism=Nannochloropsis oceanica|type=mRNA|length=1453bp|location=Sequence derived from alignment at chr19:293009..294461- (Nannochloropsis oceanica)
ATGGACTCCTCATCCTCAAGCATCTCGAGCATGTCGACGGTCTCGCATGG
TGGTGCGGCCGCGGAGGCCCAGCGGTGGGAGGAGCCGGAGCACATCAAGG
TATTCAATGAGTACAAGCTCTACGCCACGTGCGGCATCCCGCGCAAGTAG
CACGCGGTATGGAAGAAGCGGTGCTACTTCTGCAGCCACCACAAGGACCA
CAAGAAGGACGTCTACTGCATCTACTGGGCTGCGTGTCGCTCGACCTGTG
GACGGACATAACGCAGATGGAGTGGGCGTGCTCCTCCACACCACCATGAA
GACGAGTGACGGGTACGAGCAGAGGGAGATCTGCCTTGCCTGCACGAAGG
TGGACAAGAAGCACATCACGGCCGAGGTGGTGCAGCAGTACCTGGAGACG
ACCCTCAAGAACTTTGGCCTCCCCGTCAAGTCCATCTTCTGCGCCTTCCA
CGACGGCGACGCGAAGGTAATCATATGCGTCCGTGATGCTGACCTGCGCT
CCTCGCTCTGTTTCATTCGCAGCCTGCAGCGTACCATCGCCGTATCTTTC
AAGGGAGCGAATGCAGCCCTGGCTGTACTCAAGCGGACGAAGAAGGCCGT
CACGGGCGCCCGCCAGAGCAACGTGCAGGCGGCGTACCTGCGGGACGCCC
AGGTGTCCATCGGCGCCCCGCAGCGTGCCCTCATACAGGATAACCAGACG
CGGTGGGGTTCAACGCACGACATGGCGGAGCGCGCAACGGAGCAGGAGGG
GGCCTTCCCCGCGGCGTACGGGCTAGACGACGACCGTAACCGCGCTTTCT
CCAAGAAGGTCTTCGACCCGGAGAAGAGACTGTAGCCGGGGGACTTCTCC
CTCCTGGGCGAAATCGTGACTGTCTACAGCCCCTTTCGCCAATTGACCAC
GGAGCTGCAGTCGGCAGGGATCACCACCTCTCTCGTCGTGCCCGCCTATT
TGCAGCTGGTGGACGGCCTCCAGGCGTACAGCGAGATCGTGGTGGAGATG
CCCCTCGCCGGCACCAGCTACCCCGCCACGTCTGTATGTAAGCCGGTGAG
TGAGCTGGATGCCTCGGAGCAGAGGATCGTAGCGCAGGCGCGCGTGGACT
TGATGGAGGAGGAGGAGGAGGAGGAGGAGGGCAAGGATGGGGGTGAAAAG
GAAGATGACGAGGATGTGGAGGAACAGTGGGCAGATATGGAGGAAGAGGT
AGCGGGAGCGGGGGAGGACAGTGAGATTGTGGAGCGGGACGAGCTGGGTT
TGGATGCCTTGATGGGATTCGATTTTATGGAGCCTAGCGATGACTTCTGG
GACGAGCTCGGGGAGGTGGAGGAGTGGTGGTTGGACGATGAGTGATTTCA
ATGGTATGTGGAGTATGTGTGCAGTGGAGGATGATCGTACGTAGGCTTTT
TTACTTTCCCCCCCCTTTCCTGCGAAGAACAAATAACCAAAGTAAGGCCC
CAC
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Coding sequence (CDS) from alignment at chr19:293009..294461-

>NO19G00860.1 ID=NO19G00860.1|Name=NO19G00860.1|organism=Nannochloropsis oceanica|type=CDS|length=966bp|location=Sequence derived from alignment at chr19:293009..294461- (Nannochloropsis oceanica)
ATGGACTCCTCATCCTCAAGCATCTCGAGCATGTCGACGGTCTCGCATGG
TGGTGCGGCCGCGGAGGCCCAGCGGTGGGAGGAGCCGGAGCACATCAAGA
CGAGTGACGGGTACGAGCAGAGGGAGATCTGCCTTGCCTGCACGAAGGTG
GACAAGAAGCACATCACGGCCGAGGTGGTGCAGCAGTACCTGGAGACGAC
CCTCAAGAACTTTGGCCTCCCCGTCAAGTCCATCTTCTGCGCCTTCCACG
ACGGCGACGCGAAGGTAATCATATGCGTCCGTGATGCTGACCTGCGCTCC
TCGCTCTGTTTCATTCGCAGCCTGCAGCGTACCATCGCCGTATCTTTCAA
GGGAGCGAATGCAGCCCTGGCTGTACTCAAGCGGACGAAGAAGGCCGTCA
CGGGCGCCCGCCAGAGCAACGTGCAGGCGGCGTACCTGCGGGACGCCCAG
GTGTCCATCGGCGCCCCGCAGCGTGCCCTCATACAGGATAACCAGACGCG
CCCCTTTCGCCAATTGACCACGGAGCTGCAGTCGGCAGGGATCACCACCT
CTCTCGTCGTGCCCGCCTATTTGCAGCTGGTGGACGGCCTCCAGGCGTAC
AGCGAGATCGTGGTGGAGATGCCCCTCGCCGGCACCAGCTACCCCGCCAC
GTCTGTATGTAAGCCGGTGAGTGAGCTGGATGCCTCGGAGCAGAGGATCG
TAGCGCAGGCGCGCGTGGACTTGATGGAGGAGGAGGAGGAGGAGGAGGAG
GGCAAGGATGGGGGTGAAAAGGAAGATGACGAGGATGTGGAGGAACAGTG
GGCAGATATGGAGGAAGAGGTAGCGGGAGCGGGGGAGGACAGTGAGATTG
TGGAGCGGGACGAGCTGGGTTTGGATGCCTTGATGGGATTCGATTTTATG
GAGCCTAGCGATGACTTCTGGGACGAGCTCGGGGAGGTGGAGGAGTGGTG
GTTGGACGATGAGTGA
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Synonyms
Publications