NO19G00680.1, NO19G00680.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO19G00680.1
Unique NameNO19G00680.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1515
Alignment locationchr19:246047..247721 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr19genomechr19:246047..247721 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO19G00680.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO19G00680NO19G00680Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO19G00680.1NO19G00680.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO19G00680.1.cds1NO19G00680.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G00680.1.cds2NO19G00680.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO19G00680.1 ID=NO19G00680.1|Name=NO19G00680.1|organism=Nannochloropsis oceanica|type=mRNA|length=1515bp
CTACTCCTTACCGCCAAACTCAACCTAAATCAGGCCCACCATGGCTTACC
AGCTTCGCTGCCTGGGTCTCTCCCTCCTCTTTGCCTCGCTCGTCTCGGGG
GCCTGGAACCCATTCGCTGACCTTTCTCAAGGCATCTCTGCCCACGTCGA
CCGCAATGTCGGAGAGACGGACGGTACCCTTACCAGCAGCACGGGAGGGC
TGGTCGTTCCGCCTGTGCGTGGCGGGGGCTTCCTGTGGTGGACATCCACG
GAAGAGAAAGGTGAACTTGCAAAGGAAGACGCCCAAAAATCTTGGTTCTG
GGGAAAGGAGTATGCGAAGGATAAGGCGTCTGACACCAAAGACGCAGTGA
CTACCAAGGCTGAGGCAGCGAAGAAAAAGTCCGCTAAGGCGTCAGAGCAG
GGTAAAGAGTCGTTGCATAATATGAAGGACAAGCTGAGCGACAAGTACGA
CACAGTGAAAGCGCAAGCCAAGTGTGTGGCAAGCAAGACGACGGAGGGCA
TGAAGGAGGGAGTGGACAGCACCAAGTCCACCTTGGCGACGGGCAGGCAC
AAAATCAAGGCGGTGGGAAACACTGTCGAGGTCTTGGGGGATATGAAGAC
GGGCTACGACAAATACCTGCATGGCAAGGCCCAAGCAAATCAACTGGTGC
ACAGTGCCGAGGAGGGGGTGGAGGAAGGGATGGAAAAAACCAAAGGGCTG
TTGAGTTGGATCATAGAGGTGCTTGGGTGGCCTTTTCGTTCACGTAGGGT
GGTAACGACGACGACGATCCGCGACCGAGGCGTGATGAGCAGGGAGGAGG
GTGGACCCTTTGTTCTGGAGGAAGAAAATTTGGTGACGGCTCCCAAGAGC
GTGGATGATGCATTGGAAGAGTTTGAGACGTGCAAGCAAGTTGATTCAAT
GACCGAGGAGGAGGCCCAGAAGACCCGCAATCTGTTTCAAGCAGCTCGTG
ACATGATTAAAGGCCGGCCGCCCTTGCGTTCGGAGCAGACGGTGCCTGCC
GAGTCTTTTAAGGAGCGCTACGCCAAGGAGAAGAGGGAGACGGAGGAGAG
GCAGCGTCATTGGTAGGGGGAAGAGAAGGAGGGAGGGAGGGAGGGAGCGA
GGGAAGCGTGTATTGGGTAGTCTTGTTCTGAGTGCAATGAGGAGGAGGGT
AAAGATAGAATGAGAGAGTAACGACGAGGGGAGAAGGAGAAGAGAGAACG
AGCGGGGGCGGAAAGCGCAGGAAGAGAAAGGGGGAAACAAGAGAAGGGAG
GAATGATGGGGTAGGGGAAGAGACCGAGTAACAAGACTGCAAACATTAGC
TGGATATAGAAAAACAGCCGAAGAAGAAGAAGAGAAGCAATTATTACGAC
AGTCATAGCGCGTTGAATAAAGGAAAAAGAGAACCCATGAGAGAGAATGG
AGGAAAAGAAATTGTATTGACATAAGGCTCTTTCCTTTTCCAAAAAGAAA
GGAGAGAAGAGAGGCAGGGATCCTTCATTTTGTTGTTCTTGCTAAGATCT
TTGAGCGCCCCCCCC
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protein sequence of NO19G00680.1

>NO19G00680.1-protein ID=NO19G00680.1-protein|Name=NO19G00680.1|organism=Nannochloropsis oceanica|type=polypeptide|length=342bp
MAYQLRCLGLSLLFASLVSGAWNPFADLSQGISAHVDRNVGETDGTLTSS
TGGLVVPPVRGGGFLWWTSTEEKGELAKEDAQKSWFWGKEYAKDKASDTK
DAVTTKAEAAKKKSAKASEQGKESLHNMKDKLSDKYDTVKAQAKCVASKT
TEGMKEGVDSTKSTLATGRHKIKAVGNTVEVLGDMKTGYDKYLHGKAQAN
QLVHSAEEGVEEGMEKTKGLLSWIIEVLGWPFRSRRVVTTTTIRDRGVMS
REEGGPFVLEEENLVTAPKSVDDALEEFETCKQVDSMTEEEAQKTRNLFQ
AARDMIKGRPPLRSEQTVPAESFKERYAKEKRETEERQRHW*
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mRNA from alignment at chr19:246047..247721+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO19G00680.1 ID=NO19G00680.1|Name=NO19G00680.1|organism=Nannochloropsis oceanica|type=mRNA|length=1675bp|location=Sequence derived from alignment at chr19:246047..247721+ (Nannochloropsis oceanica)
CTACTCCTTACCGCCAAACTCAACCTAAATCAGGCCCACCATGGCTTACC
AGCTTCGCTGCCTGGGTCTCTCCCTCCTCTTTGCCTCGCTCGTCTCGGGG
GCCTGGAACCCATTCGCTGACCTTTCTCAAGGCATCTCTGCCCACGTCGA
CCGCAATGTCGGAGAGACGGACGGTACCCTTACCAGCAGCACGGGAGGGC
TGGTCGTTCCGCCTGTGCGTGGCGGGGGCTTCCTGTGGTGGACATCCACG
GAAGAGAAAGGTGAACTTGCAAAGGAAGACGCCCAAAAATCTTGGTTCTG
GGGAAAGGAGTATGCGAAGGATAAGGCGTCTGACACCAAAGACGCAGTGA
CTACCAAGGCTGAGGCAGCGAAGAAAAAGTCCGCTAAGGCGTCAGAGCAG
GGTAAAGAGTCGTTGCATAATATGAAGGACAAGCTGAGCGACAAGTACGA
CACAGTGAAAGCGCAAGCCAAGTGTGTGGCAAGCAAGACGACGGAGGGCA
TGAAGGAGGGAGTGGACAGCACCAAGTCCACCTTGGCGACGGGCAGGCAC
AAAATCAAGGCGGTGGGAAACACTGTCGAGGTCTTGGGGGATATGAAGAC
GGGCTACGACAAATACCTGCATGGCAAGGCCCAAGCAAATCAACTGGTGC
ACAGTGCCGAGGAGGGGGTGGAGGAAGGGATGGAAAAAACCAAAGGGCTG
TTGAGTTGGATCATAGAGGTGCTTGGGTGGCCTTTTCGTTCACGTAGGGT
GGTAACGACGACGACGATCCGCGACCGAGGCGTGATGAGCAGGGAGGAGG
GTGGACCCTTTGTTCTGGAGGAAGAAAATTTGGTGACGGCTCCCAAGAGC
GTGGATGATGCATTGGAAGAGTTTGAGACGTGCAAGGTGCATAGGGAGGG
AGGGAAGGAGGGAGGGAAGAAGGGAGGGAGGGAGAGATCTTTTGACTCAA
AAATCCCTCTCTTAATCAATAAAATGAATAAGATTGATTGCCACACGCCA
CTTACTCTCTCCTTCCATTAATCTTCCTTCTTCCCCACCCACACAGCAAG
TTGATTCAATGACCGAGGAGGAGGCCCAGAAGACCCGCAATCTGTTTCAA
GCAGCTCGTGACATGATTAAAGGCCGGCCGCCCTTGCGTTCGGAGCAGAC
GGTGCCTGCCGAGTCTTTTAAGGAGCGCTACGCCAAGGAGAAGAGGGAGA
CGGAGGAGAGGCAGCGTCATTGGTAGGGGGAAGAGAAGGAGGGAGGGAGG
GAGGGAGCGAGGGAAGCGTGTATTGGGTAGTCTTGTTCTGAGTGCAATGA
GGAGGAGGGTAAAGATAGAATGAGAGAGTAACGACGAGGGGAGAAGGAGA
AGAGAGAACGAGCGGGGGCGGAAAGCGCAGGAAGAGAAAGGGGGAAACAA
GAGAAGGGAGGAATGATGGGGTAGGGGAAGAGACCGAGTAACAAGACTGC
AAACATTAGCTGGATATAGAAAAACAGCCGAAGAAGAAGAAGAGAAGCAA
TTATTACGACAGTCATAGCGCGTTGAATAAAGGAAAAAGAGAACCCATGA
GAGAGAATGGAGGAAAAGAAATTGTATTGACATAAGGCTCTTTCCTTTTC
CAAAAAGAAAGGAGAGAAGAGAGGCAGGGATCCTTCATTTTGTTGTTCTT
GCTAAGATCTTTGAGCGCCCCCCCC
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Coding sequence (CDS) from alignment at chr19:246047..247721+

>NO19G00680.1 ID=NO19G00680.1|Name=NO19G00680.1|organism=Nannochloropsis oceanica|type=CDS|length=1026bp|location=Sequence derived from alignment at chr19:246047..247721+ (Nannochloropsis oceanica)
ATGGCTTACCAGCTTCGCTGCCTGGGTCTCTCCCTCCTCTTTGCCTCGCT
CGTCTCGGGGGCCTGGAACCCATTCGCTGACCTTTCTCAAGGCATCTCTG
CCCACGTCGACCGCAATGTCGGAGAGACGGACGGTACCCTTACCAGCAGC
ACGGGAGGGCTGGTCGTTCCGCCTGTGCGTGGCGGGGGCTTCCTGTGGTG
GACATCCACGGAAGAGAAAGGTGAACTTGCAAAGGAAGACGCCCAAAAAT
CTTGGTTCTGGGGAAAGGAGTATGCGAAGGATAAGGCGTCTGACACCAAA
GACGCAGTGACTACCAAGGCTGAGGCAGCGAAGAAAAAGTCCGCTAAGGC
GTCAGAGCAGGGTAAAGAGTCGTTGCATAATATGAAGGACAAGCTGAGCG
ACAAGTACGACACAGTGAAAGCGCAAGCCAAGTGTGTGGCAAGCAAGACG
ACGGAGGGCATGAAGGAGGGAGTGGACAGCACCAAGTCCACCTTGGCGAC
GGGCAGGCACAAAATCAAGGCGGTGGGAAACACTGTCGAGGTCTTGGGGG
ATATGAAGACGGGCTACGACAAATACCTGCATGGCAAGGCCCAAGCAAAT
CAACTGGTGCACAGTGCCGAGGAGGGGGTGGAGGAAGGGATGGAAAAAAC
CAAAGGGCTGTTGAGTTGGATCATAGAGGTGCTTGGGTGGCCTTTTCGTT
CACGTAGGGTGGTAACGACGACGACGATCCGCGACCGAGGCGTGATGAGC
AGGGAGGAGGGTGGACCCTTTGTTCTGGAGGAAGAAAATTTGGTGACGGC
TCCCAAGAGCGTGGATGATGCATTGGAAGAGTTTGAGACGTGCAAGCAAG
TTGATTCAATGACCGAGGAGGAGGCCCAGAAGACCCGCAATCTGTTTCAA
GCAGCTCGTGACATGATTAAAGGCCGGCCGCCCTTGCGTTCGGAGCAGAC
GGTGCCTGCCGAGTCTTTTAAGGAGCGCTACGCCAAGGAGAAGAGGGAGA
CGGAGGAGAGGCAGCGTCATTGGTAG
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Synonyms
Publications