NO19G00550.2, NO19G00550.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO19G00550.2
Unique NameNO19G00550.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2319
Alignment locationchr19:212870..215561 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr19genomechr19:212870..215561 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO19G00550.2 vs.
Match: EWM25571.1 (wsc domain containing 1 [Nannochloropsis gaditana])

HSP 1 Score: 221.9 bits (564), Expect = 4.300e-54
Identity = 182/482 (37.76%), Postives = 259/482 (53.73%), Query Frame = 0 
Query:    9 KLCKTPVRIAIGTAVMCAGLALLHHFWLPPSFKEGTLRASGTIIAETNDGVPSQEASSRSWSVPRLFSFSSSPVVAQKETASSPDSLRGGPVDKVLPLASPFGQDSEQSEEETTEDRENKETDEEDKEKDESQEAKVDER-------QQYREAESTGAMEEVSEEDQEGDDDDEDSLSEGEWEEEEQEEKEEKEEEEEEEEEEE--------EEETKDDEEGEQDEGKEETEEEEEKTE--------------------------------EVIPSLAKCQKSYGNRRFLLDDEKALPPILYSFPGSGNTWTRLLIDFSTGIYTGTILARPKSKPDNDKLPGQGFCTQKVSVIKAHPHQFSPDQLFKVSSSGRTPGRCYRNGNITSFDRFILLTRNPFDAIWSEYRRTANDEHFILRDDFALSHFADVAISKWSHEYKYMLFAFKKIQRKLPE-GILSIQYEEMLNPNLRLSILSKLVEFIG 443
            +  K   RI IGT ++C GLA L+   + PSFK  +L  +G ++ E  + + S        ++P      SS ++      ++P   +G      LPL          ++      R     ++   +K+  +E     R        +  E    G  EE   E ++ DD++ED L E   ++E  EE+EEKEE    E++EE        E+E KDDE   +++ K+ET  E+   E                                E +P+L +C+ SY  RRFL ++E+ +PPILYSFPGSGNTWTRLLID STG+++GT+LA+   K    K  GQG C+++VSV+KAHP+ F P++LF V+      GRC   G I +F RFILL RNPFDAIWSEYRRTA + HF L DDF L  FA VAISK S  YK M+ +FK +++ LPE  I S+ YE+ML+ ++R+ ILS + +FIG
Sbjct:   13 RFAKKTGRILIGTTIICVGLAFLYKQRVQPSFKRTSLVTAGNVVVEPRNELKSSSDQRAESALP------SSTLIPGNHLTTTPSPTQGEKTATDLPLEDVIDAQKNATQPPPVNPRGTDVEEQRGGKKESPKEEDTKGRGGDGEHPPKILETSGEGLEEEWEGEFEQDDDEEEDFLDEEYADDEGVEEEEEKEEGAVAEKKEEVAEKAIEPEKERKDDEGKAREKDKKETSGEQHAAEASKLASGGEGTNATLPTTPAKGIGKKEEHAKGETVPTLEECKASYAKRRFLDENEEVVPPILYSFPGSGNTWTRLLIDISTGVHSGTLLAKRPGKVS--KFEGQGHCSKRVSVLKAHPNHFPPERLFTVT------GRCNDWGGIKAFRRFILLMRNPFDAIWSEYRRTATEAHFFLSDDFDLEAFATVAISKMSRLYKDMIRSFKTVRKTLPEKNIYSMYYEDMLDQDMRMKILSNITDFIG 480
The following BLAST results are available for this feature:
BLAST of NO19G00550.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25571.14.300e-5437.76wsc domain containing 1 [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO19G00550NO19G00550Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO19G00550.2NO19G00550.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO19G00550.2.cds1NO19G00550.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G00550.2.cds2NO19G00550.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G00550.2.cds3NO19G00550.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G00550.2.cds4NO19G00550.2.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G00550.2.cds5NO19G00550.2.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO19G00550.2 ID=NO19G00550.2|Name=NO19G00550.2|organism=Nannochloropsis oceanica|type=mRNA|length=2319bp
CGGCTCATGATTCGGTTCGTGAGATGGACCACGTGCCCTTCGCTCCTTGT
CTTTGGCACCGGCGGTCTGGGTGCCGTGCGGTAGCCTAGACCCGTGGTAA
CAATGATCCTCCCCTTCATTCCTCAGAGAGGGAAGCTGCAGCCAGCGCGA
AGTTGAGAGAGTAACATTTTTTTGGGGGCACCGATAAACCTCTTAGGTCC
CATCCCAGGACCTCTGGGGAATACTCTTTGTCCTAATACGCTAACCATTC
ACAAACTATGATATAATTAGAGAGACCGCATACGACGTAAATCGGGAACA
CGTGCTCCAATCAACGCTTACCTGCCCAAAACGGAAGAGCCATGGGTGCC
AAACGTGCCCATAGTAAGCTTTGCAAGACGCCTGTTCGAATTGCCATTGG
GACGGCTGTAATGTGCGCTGGCCTTGCGCTGTTGCATCACTTTTGGTTGC
CACCATCTTTCAAAGAAGGGACTCTTCGTGCATCTGGTACCATCATAGCG
GAAACCAATGATGGAGTGCCCTCTCAAGAAGCGTCTTCCAGGTCGTGGAG
TGTTCCACGCCTTTTCTCTTTCTCGTCGTCTCCGGTGGTTGCGCAAAAAG
AGACCGCTAGCAGCCCTGACAGCCTTAGAGGTGGTCCCGTGGACAAAGTG
TTGCCTTTGGCTTCACCATTTGGTCAGGACAGTGAACAAAGCGAAGAGGA
AACGACAGAGGACAGGGAAAACAAGGAGACTGACGAGGAGGACAAAGAGA
AAGATGAAAGCCAGGAAGCGAAAGTAGATGAGCGGCAGCAGTACAGAGAA
GCAGAGAGCACTGGAGCGATGGAAGAAGTTTCTGAAGAAGATCAAGAAGG
AGATGACGATGATGAAGACTCCTTATCCGAGGGAGAGTGGGAGGAAGAGG
AGCAGGAGGAAAAGGAGGAAAAAGAGGAGGAGGAGGAGGAGGAGGAGGAG
GAGGAGGAGGAGGAGACAAAAGACGACGAGGAGGGAGAGCAGGATGAGGG
AAAGGAGGAAACAGAAGAGGAGGAGGAGAAGACGGAGGAAGTCATCCCCT
CACTAGCCAAATGCCAGAAGAGCTATGGGAACCGAAGATTTCTACTTGAT
GATGAAAAGGCTTTGCCGCCTATTCTCTACAGCTTTCCAGGGAGTGGAAA
TACGTGGACTCGTCTTCTCATTGATTTCAGCACGGGAATTTACACTGGTA
CGATATTGGCCAGACCGAAATCCAAGCCTGACAATGACAAGCTGCCAGGA
CAAGGCTTCTGTACTCAAAAGGTCAGTGTAATCAAGGCCCATCCTCATCA
GTTCAGTCCTGATCAGCTTTTTAAAGTGTCTTCTTCGGGTCGTACTCCAG
GCCGATGTTACCGGAATGGCAACATCACGTCATTCGATCGATTCATATTG
CTGACTCGCAACCCATTTGACGCCATTTGGAGCGAGTACCGAAGGACTGC
TAATGACGAACATTTCATTCTTCGCGACGATTTTGCTTTGAGTCATTTCG
CCGATGTCGCAATCTCAAAATGGTCACATGAATACAAGTATATGCTATTC
GCATTCAAGAAAATTCAAAGGAAGTTGCCCGAGGGCATCCTCAGCATTCA
ATATGAAGAGATGCTCAATCCAAATTTGCGCCTGAGCATCCTGTCGAAGT
TGGTAGAATTTATAGGTAAGCTAAACATAATAAGTATTAGCAGTTGTCAA
CATATGTACATTTGGTTTCGCTGTGATACTTTATGTGCTCTGGCCCATCA
TCCACCTCATTGATCCGACTTCTACGAATGAGCGTCATAGCTGTCTTTCA
TCGCTTATATAAACCTTCCCTCACCGCACCCAGGGCTCAATAAAAAAGAC
CTACATGAAAATATGCGACAGCGTTTACAGTGCGCATTTGTACTTGCCGA
GGACAGGGGTGGTGGTCGCCGCGGCAGTCAAATGCTTCAAAGGGAAAATA
TTGGCGATGACCAAATCGTTACAACAAAAGATGTGTATCCACCAGAGGTC
GCTTGCCCAATGTGGGATATTTTTGGCCCCCAGGCCAAAAATCTGGGATA
CACCTTACCAAATGGGATAACCGAAGAGGAATGTGGGAAGATTTGAGCAG
ATCGAGGGACCATGTAGGCTCTAATATGTCATATTTCTCTGCCTCTTGCT
CGTAATACCCACGAAACTGTATTTCAGCATAATAAAAATAATACGTATCC
ACTAGATCAAATTAGGTATAATAAAATGAAGTCTGGAAATAAAAAGTAAA
TAGCTTTAAATATTCAAACCGAGACACCGTCATTATGGTATTAAAAATAG
CATGCTTTCCCGAAATTCC
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protein sequence of NO19G00550.2

>NO19G00550.2-protein ID=NO19G00550.2-protein|Name=NO19G00550.2|organism=Nannochloropsis oceanica|type=polypeptide|length=474bp
MGAKRAHSKLCKTPVRIAIGTAVMCAGLALLHHFWLPPSFKEGTLRASGT
IIAETNDGVPSQEASSRSWSVPRLFSFSSSPVVAQKETASSPDSLRGGPV
DKVLPLASPFGQDSEQSEEETTEDRENKETDEEDKEKDESQEAKVDERQQ
YREAESTGAMEEVSEEDQEGDDDDEDSLSEGEWEEEEQEEKEEKEEEEEE
EEEEEEEETKDDEEGEQDEGKEETEEEEEKTEEVIPSLAKCQKSYGNRRF
LLDDEKALPPILYSFPGSGNTWTRLLIDFSTGIYTGTILARPKSKPDNDK
LPGQGFCTQKVSVIKAHPHQFSPDQLFKVSSSGRTPGRCYRNGNITSFDR
FILLTRNPFDAIWSEYRRTANDEHFILRDDFALSHFADVAISKWSHEYKY
MLFAFKKIQRKLPEGILSIQYEEMLNPNLRLSILSKLVEFIGKLNIISIS
SCQHMYIWFRCDTLCALAHHPPH*
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mRNA from alignment at chr19:212870..215561+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO19G00550.2 ID=NO19G00550.2|Name=NO19G00550.2|organism=Nannochloropsis oceanica|type=mRNA|length=2692bp|location=Sequence derived from alignment at chr19:212870..215561+ (Nannochloropsis oceanica)
CGGCTCATGATTCGGTTCGTGAGATGGACCACGTGCCCTTCGCTCCTTGT
CTTTGGCACCGGCGGTCTGGGTGCCGTGCGGTAGCCTAGACCCGTGGTAA
CAATGATCCTCCCCTTCATTCCTCAGAGAGGGAAGCTGCAGCCAGCGCGA
AGTTGAGAGAGTAACATTTTTTTGGGGGCACCGATAAACCTCTTAGGTCC
CATCCCAGGACCTCTGGGGAATACTCTTTGTCCTAATACGCTAACCATTC
ACAAACTATGATATAATTAGAGAGACCGCATACGACGTAAATCGGGAACA
CGTGCTCCAATCAACGCTTACCTGCCCAAAACGGAAGAGCCATGGGTGCC
AAACGTGCCCATAGTAAGCTTTGCAAGACGCCTGTTCGAATTGCCATTGG
GACGGCTGTAATGTGCGCTGGCCTTGCGCTGTTGCATCACTTTTGGTTGC
CACCATCTTTCAAAGAAGGGACTCTTCGTGCATCTGGTACCATCATAGCG
GAAACCAATGATGGAGTGCCCTCTCAAGAAGCGTCTTCCAGGTCGTGGAG
TGTTCCACGCCTTTTCTCTTTCTCGTCGTCTCCGGTGGTTGCGCAAAAAG
AGACCGCTAGCAGCCCTGACAGCCTTAGAGGTGGTCCCGTGGACAAAGTG
TTGCCTTTGGCTTCACCATTTGGTCAGGACAGTGAACAAAGCGAAGAGGA
AACGACAGAGGACAGGGAAAACAAGGAGACTGACGAGGAGGACAAAGAGA
AAGATGAAAGCCAGGAAGCGAAAGTAGATGAGCGGCAGCAGTACAGAGAA
GCAGAGAGCACTGGAGCGATGGAAGAAGTTTCTGAAGAAGATCAAGAAGG
AGATGACGATGATGAAGACTCCTTATCCGAGGGAGAGTGGGAGGAAGAGG
AGCAGGAGGAAAAGGAGGAAAAAGAGGAGGAGGAGGAGGAGGAGGAGGAG
GAGGAGGAGGAGGAGACAAAAGACGACGAGGAGGGAGAGCAGGATGAGGG
AAAGGAGGAAACAGAAGAGGAGGAGGAGAAGACGGAGGAAGTCATCCCCT
CACTAGCCAAATGCCAGAAGAGCTATGGGAACCGAAGATTTCTACTTGAT
GATGAAAAGGCTTTGCCGCCTATTCTCTACAGCTTTCCAGGTAAGTGAGT
GCCTAAATTTACTCTGTAGTTTTCTCGTTCGTTCATTGGTAGTTTACTTA
TATTTGTTTCGACAGGGAGTGGAAATACGTGGACTCGTCTTCTCATTGAT
TTCAGCACGGGAATTTACACTGGTACGATATTGGCCAGACCGAAATCCAA
GCCTGACAATGACAAGCTGCCAGGACAAGGCTTCTGTACTCAAAAGGTTA
GTACAAAGAATACTCCTCCTCAGTTTTTCGTTTTACGTTTCTTCTCTGCA
TTCGGTTAATCTTGCCATGCATCCAACTGATCTGGCTTTGATCCGTCCCT
TTATGAACACATAGGTCAGTGTAATCAAGGCCCATCCTCATCAGTTCAGT
CCTGATCAGCTTTTTAAAGTGTCTTCTTCGGGTCGTACTCCAGGTAACTG
TTCTGGGAACCTAAGCACTCACGACTACAAAGGTGAATCAGCTATTAATT
ACCCTTATTCATTCGTAATTCTCTGTATATAGGCCGATGTTACCGGAATG
GCAACATCACGTCATTCGATCGATTCATATTGCTGACTCGCAACCCATTT
GACGCCATTTGGAGCGAGTACCGAAGGACTGCTAATGACGAACATTTCAT
TCTTCGCGACGATTTTGCTTTGAGTCATTTCGCCGATGTCGCAATCTCAA
AATGGTCACGTAAGTAAGAGCTTGTGCGTCCGAAAACTTGTCATGCATTC
ATTCCTACAAGCTGAGTAAATTCACGTCATATCTTCCCCCACAAACCTAG
ATGAATACAAGTATATGCTATTCGCATTCAAGAAAATTCAAAGGAAGTTG
CCCGAGGGCATCCTCAGCATTCAATATGAAGAGATGCTCAATCCAAATTT
GCGCCTGAGCATCCTGTCGAAGTTGGTAGAATTTATAGGTAAGCTAAACA
TAATAAGTATTAGCAGTTGTCAACATATGTACATTTGGTTTCGCTGTGAT
ACTTTATGTGCTCTGGCCCATCATCCACCTCATTGATCCGACTTCTACGA
ATGAGCGTCATAGCTGTCTTTCATCGCTTATATAAACCTTCCCTCACCGC
ACCCAGGGCTCAATAAAAAAGACCTACATGAAAATATGCGACAGCGTTTA
CAGTGCGCATTTGTACTTGCCGAGGACAGGGGTGGTGGTCGCCGCGGCAG
TCAAATGCTTCAAAGGGAAAATATTGGCGATGACCAAATCGTTACAACAA
AAGATGTGTATCCACCAGAGGTCGCTTGCCCAATGTGGGATATTTTTGGC
CCCCAGGCCAAAAATCTGGGATACACCTTACCAAATGGGATAACCGAAGA
GGAATGTGGGAAGATTTGAGCAGATCGAGGGACCATGTAGGCTCTAATAT
GTCATATTTCTCTGCCTCTTGCTCGTAATACCCACGAAACTGTATTTCAG
CATAATAAAAATAATACGTATCCACTAGATCAAATTAGGTATAATAAAAT
GAAGTCTGGAAATAAAAAGTAAATAGCTTTAAATATTCAAACCGAGACAC
CGTCATTATGGTATTAAAAATAGCATGCTTTCCCGAAATTCC
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Coding sequence (CDS) from alignment at chr19:212870..215561+

>NO19G00550.2 ID=NO19G00550.2|Name=NO19G00550.2|organism=Nannochloropsis oceanica|type=CDS|length=1422bp|location=Sequence derived from alignment at chr19:212870..215561+ (Nannochloropsis oceanica)
ATGGGTGCCAAACGTGCCCATAGTAAGCTTTGCAAGACGCCTGTTCGAAT
TGCCATTGGGACGGCTGTAATGTGCGCTGGCCTTGCGCTGTTGCATCACT
TTTGGTTGCCACCATCTTTCAAAGAAGGGACTCTTCGTGCATCTGGTACC
ATCATAGCGGAAACCAATGATGGAGTGCCCTCTCAAGAAGCGTCTTCCAG
GTCGTGGAGTGTTCCACGCCTTTTCTCTTTCTCGTCGTCTCCGGTGGTTG
CGCAAAAAGAGACCGCTAGCAGCCCTGACAGCCTTAGAGGTGGTCCCGTG
GACAAAGTGTTGCCTTTGGCTTCACCATTTGGTCAGGACAGTGAACAAAG
CGAAGAGGAAACGACAGAGGACAGGGAAAACAAGGAGACTGACGAGGAGG
ACAAAGAGAAAGATGAAAGCCAGGAAGCGAAAGTAGATGAGCGGCAGCAG
TACAGAGAAGCAGAGAGCACTGGAGCGATGGAAGAAGTTTCTGAAGAAGA
TCAAGAAGGAGATGACGATGATGAAGACTCCTTATCCGAGGGAGAGTGGG
AGGAAGAGGAGCAGGAGGAAAAGGAGGAAAAAGAGGAGGAGGAGGAGGAG
GAGGAGGAGGAGGAGGAGGAGGAGACAAAAGACGACGAGGAGGGAGAGCA
GGATGAGGGAAAGGAGGAAACAGAAGAGGAGGAGGAGAAGACGGAGGAAG
TCATCCCCTCACTAGCCAAATGCCAGAAGAGCTATGGGAACCGAAGATTT
CTACTTGATGATGAAAAGGCTTTGCCGCCTATTCTCTACAGCTTTCCAGG
GAGTGGAAATACGTGGACTCGTCTTCTCATTGATTTCAGCACGGGAATTT
ACACTGGTACGATATTGGCCAGACCGAAATCCAAGCCTGACAATGACAAG
CTGCCAGGACAAGGCTTCTGTACTCAAAAGGTCAGTGTAATCAAGGCCCA
TCCTCATCAGTTCAGTCCTGATCAGCTTTTTAAAGTGTCTTCTTCGGGTC
GTACTCCAGGCCGATGTTACCGGAATGGCAACATCACGTCATTCGATCGA
TTCATATTGCTGACTCGCAACCCATTTGACGCCATTTGGAGCGAGTACCG
AAGGACTGCTAATGACGAACATTTCATTCTTCGCGACGATTTTGCTTTGA
GTCATTTCGCCGATGTCGCAATCTCAAAATGGTCACATGAATACAAGTAT
ATGCTATTCGCATTCAAGAAAATTCAAAGGAAGTTGCCCGAGGGCATCCT
CAGCATTCAATATGAAGAGATGCTCAATCCAAATTTGCGCCTGAGCATCC
TGTCGAAGTTGGTAGAATTTATAGGTAAGCTAAACATAATAAGTATTAGC
AGTTGTCAACATATGTACATTTGGTTTCGCTGTGATACTTTATGTGCTCT
GGCCCATCATCCACCTCATTGA
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Synonyms
Publications