NO19G00530.1, NO19G00530.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO19G00530.1
Unique NameNO19G00530.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1184
Alignment locationchr19:206960..209454 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr19genomechr19:206960..209454 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO19G00530.1 vs.
Match: OWZ23478.1 (hypothetical protein PHMEG_0001646 [Phytophthora megakarya])

HSP 1 Score: 194.9 bits (494), Expect = 4.100e-46
Identity = 118/331 (35.65%), Postives = 184/331 (55.59%), Query Frame = 0 
Query:   15 RIILSFPAKA-------LTAAAVERADAVLSHDKEGRQTVKQEVIDALIKDNRFLDETMPLSFYEEDQRRLSFKGASKMTESLLEQVCAIIPALECLDLSACFSLTDSALPLALSHCPSLKTLKLENCRKLTDAAFDHIVKFNRQLQALHVGGNFNMTQEGLIRLLSTHPNRANFEEFYCSGIHFTSPLLLALAAHCPTLRGLGIGYNHLMTEEALLTLLRHLKRLRSLHVPWCQRAITDSLLQSLGDECPALEELDICGVKGVTAEGIEALLQKTNRHTADDASMD-VDPPRKEGRKEGRREGGRKRLRRLKIRYAGLNRANIQAIEERW 338
            +++L F +KA       L    ++R+  +L   K      KQEVI AL++  R  D+T+P SF+     R+   GA K++ + +E +  I P L  ++ S CF LTD A+ + L +CP +K L +ENCRKLTDA  DH+ K   +LQ++ VGGNFNMT  G+ +L+  HPN + F + + SG   T   +  + A C  L  L +GY   +T+EAL+ LL+  + +  L + W   AI+D L++ LG E   L+EL++CGVK V+A+ I A +     H    A  + +DP       +   E  RKRL+++  RY  + +    A++ER+
Sbjct:   12 KMVLKFISKAPRQLDVILNEQTLDRSHRILKPAKSRTHKAKQEVIRALLRGGRLGDDTLPASFFHSSMTRVEIIGA-KISTTFVEMLSKICPKLHSVNFSGCFRLTDDAIEMLLKNCPEIKELNIENCRKLTDATLDHLRKLAPKLQSIDVGGNFNMTIPGITKLIEKHPNHSKFTKVHVSGHPVTDQTIKTIMAKCRKLHSLSVGY-CAITDEALIALLKKRESVSRLCLHW-NVAISDQLMRFLGSEARNLQELNLCGVKSVSADAIVAAI-----HAKMGARTELLDPTLSHPSPDENPEPERKRLKKIDFRYTTITKEAAAAVKERY 334
The following BLAST results are available for this feature:
BLAST of NO19G00530.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
OWZ23478.14.100e-4635.65hypothetical protein PHMEG_0001646 [Phytophthora m... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO19G00530NO19G00530Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO19G00530.1NO19G00530.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO19G00530.1.cds1NO19G00530.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G00530.1.cds2NO19G00530.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G00530.1.cds3NO19G00530.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G00530.1.cds4NO19G00530.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G00530.1.cds5NO19G00530.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G00530.1.cds6NO19G00530.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G00530.1.cds7NO19G00530.1.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G00530.1.cds8NO19G00530.1.cds8Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G00530.1.cds9NO19G00530.1.cds9Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO19G00530.1 ID=NO19G00530.1|Name=NO19G00530.1|organism=Nannochloropsis oceanica|type=mRNA|length=1184bp
ACAACCCATCACACAGAGAGATGAGCAATCGGGAGGGCAACACCCTGAAA
GATGTAGCCATGCGGATCATTTTGAGTTTCCCAGCGAAAGCTTTGACGGC
GGCGGCGGTGGAAAGAGCTGATGCAGTCCTTTCGCACGACAAGGAAGGCC
GCCAAACTGTGAAGCAAGAAGTGATCGACGCCTTGATCAAAGACAACCGG
TTCCTGGACGAGACGATGCCGTTGTCATTCTACGAAGAGGACCAACGGAG
ACTTTCGTTCAAAGGCGCCAGTAAGATGACAGAATCCCTCCTTGAGCAAG
TCTGCGCCATCATTCCTGCCCTTGAGTGCCTAGACCTTTCGGCCTGCTTT
TCGTTGACAGACAGCGCCTTGCCCCTCGCCCTAAGTCATTGCCCGTCCCT
CAAGACCTTAAAGCTGGAGAACTGCCGCAAGCTGACAGACGCGGCTTTCG
ATCACATTGTAAAGTTTAACAGGCAGCTGCAAGCCCTGCACGTGGGCGGC
AACTTCAACATGACGCAAGAGGGGCTCATCCGCCTCCTCTCCACCCACCC
CAACCGCGCCAACTTCGAGGAATTCTACTGCTCTGGCATCCACTTCACCT
CCCCCCTCCTCCTCGCCCTCGCTGCGCATTGCCCCACACTAAGGGGTTTG
GGGATCGGATATAATCATTTGATGACCGAAGAGGCTCTCTTAACCCTCCT
GCGGCATTTGAAGCGGCTTCGTTCGCTGCACGTGCCCTGGTGCCAACGGG
CCATCACCGACTCCCTCCTCCAGTCCCTGGGCGACGAGTGTCCGGCGCTC
GAGGAGTTGGACATATGCGGGGTTAAGGGCGTAACGGCCGAGGGGATAGA
GGCTTTGCTGCAGAAGACCAACCGGCACACGGCAGACGATGCAAGCATGG
ACGTGGACCCCCCGCGGAAGGAGGGAAGGAAGGAAGGAAGGAGGGAGGGA
GGGAGGAAGCGGCTGAGGCGCTTGAAGATAAGGTACGCGGGGTTGAACCG
TGCGAACATTCAGGCAATAGAAGAGAGGTGGAGGGAGGAGGTGGAATTTC
TAAATTGAGCGAGGCAGGGAGGGAGGGGTGTACAGTGTTGCACAAAGAAC
GATTGGACTATATGGTAAAAAAGGAAGCAAAACACACCAAAAATCATATA
AATTGAATTTCAAATCGATATCATCGACGGGGAG
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protein sequence of NO19G00530.1

>NO19G00530.1-protein ID=NO19G00530.1-protein|Name=NO19G00530.1|organism=Nannochloropsis oceanica|type=polypeptide|length=346bp
MSNREGNTLKDVAMRIILSFPAKALTAAAVERADAVLSHDKEGRQTVKQE
VIDALIKDNRFLDETMPLSFYEEDQRRLSFKGASKMTESLLEQVCAIIPA
LECLDLSACFSLTDSALPLALSHCPSLKTLKLENCRKLTDAAFDHIVKFN
RQLQALHVGGNFNMTQEGLIRLLSTHPNRANFEEFYCSGIHFTSPLLLAL
AAHCPTLRGLGIGYNHLMTEEALLTLLRHLKRLRSLHVPWCQRAITDSLL
QSLGDECPALEELDICGVKGVTAEGIEALLQKTNRHTADDASMDVDPPRK
EGRKEGRREGGRKRLRRLKIRYAGLNRANIQAIEERWREEVEFLN*
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mRNA from alignment at chr19:206960..209454+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO19G00530.1 ID=NO19G00530.1|Name=NO19G00530.1|organism=Nannochloropsis oceanica|type=mRNA|length=2495bp|location=Sequence derived from alignment at chr19:206960..209454+ (Nannochloropsis oceanica)
ACAACCCATCACACAGAGAGATGAGCAATCGGGAGGGCAACACCCTGAAA
GATGTAGCCATGCGGATCATTTTGAGTTTCCCAGCGAAAGCTTTGACGGC
GGCGGCGGTGGAAAGAGCTGATGCAGTCCTTTCGGTAGGGTAGGGTAGAG
TGGCTCAAGAGGGGGGAGCGTAGGACGTTGGGAGGGCTGAAGGAGGCTGA
AAATGGCGTAAAAGTTAAGGACGTAGATCTTTTTTAATTTTGCGAAGTGG
GGGTGGATATCTGGGATCACTTTTATTCATCTCCAACCCCCCCCTTTCCC
TTTCCAGCACGACAAGGAAGGCCGCCAAACTGTGAAGCAAGAAGTGATCG
ACGCCTTGATCAAAGACAACCGGTTCCTGGACGAGACGATGCCGTTGTCA
TTCTACGAAGAGGACCAACGGAGACTTTCGTTCAAAGGCGCCAGTAAGGT
GGGTGACACAGGGGAGGGAGGGAACAAGGGAAGGGAAGACACTTGTGACC
AACGTACACCCTTCTTCTAAACTCGCAGATGACAGAATCCCTCCTTGAGC
AAGTCTGCGCCATCATTCCTGCCCTTGAGGTGAGTCTTTGGCCCGGAAAT
ACGGAGTTGCTCGCGCCTTCCCTCACGCCCTTCCTCCTCCCCTCCCTCCC
TCCCTCCCTCCCTCAGTGCCTAGACCTTTCGGCCTGCTTTTCGTTGACAG
ACAGCGCCTTGCCCCTCGCCCTAAGTCATTGCCCGTCCCTCAAGACCTTA
AAGCTGGAGAACTGCCGCAAGCTGACAGACGCGGCTTTCGATCACATTGT
AAAGGTAAGGAAGGAATGGAAGGAGGGAGGGAGGGAAGGAGGGAAGGAAG
GAGGGTTGGATCGGCCAGATGAGTGTACAGCTCCATCCATGCATCCTTCC
CCCCCCTCCTGTGTAATATTCTCTTTTCTGGGTAGTTTAACAGGCAGCTG
CAAGCCCTGCACGTGGGCGGCAACTTCAACATGACGCAAGAGGGGCTCAT
CCGCCTCCTCTCCACCCACCCCAACCGCGCCAAGTGAGACTTCCCCCCCC
CACCTCTCTCTCTCTCTCTCTCTCTCTCTCCTCTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCGATTTCTTTTCCTCCCTTCCTCCCTGGCTAGCTGCAT
TTGTTCCTCCTTACTGTCCTCTAAGTCTTCCCTCCATCAATCAGTATGAT
GGCCAACTCGTCACTCACCTTTCCCTTCCTCCCCCCACCTTCCTCCCTCC
CTCCCTTTTCAGCTTCGAGGAATTCTACTGCTCTGGCATCCACTTCACCT
CCCCCCTCCTCCTCGCCCTCGCTGCGCATTGCCCCACACTAAGGGGTTTG
GGGATCGGATATAATCATTTGATGACCGAAGAGGTGAGGAGGGAGGGTGG
GAGGGAGGGAGGGAGAGAGAGAGGGAAGGTCGATTGCGCGAGCAAGTAAG
GCACTGCCCATTCTCCCGACCACCATTCCTCAGACCCCCAATCTCCCTCC
CCCCCTCCCTCCCTCCCTCCCTCCCCCCTCCCTCCCCCCCTCCCTCCCTC
AGGCTCTCTTAACCCTCCTGCGGCATTTGAAGCGGCTTCGTTCGCTGCAC
GTGCCCTGGTGCCAACGGGCCATCACCGACTCCCTCCTCCAGGTACACCC
TCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCTTCCTTCCTTTCTTCCTAT
CTTCCTTCCCTCCGTTCTTAATCACAGGGTTCCTTTCCCATCATTTGTCT
ATCTCCTGTCGTCAACGGAAGAGAAGAGAGAAAGTCGTTTTTCGCTAGTG
TTGCACGCCCATGACGTCAGTCACTGCCTTGTCGATTTCTCGTGTCATGC
TGAAGCGTGTGAAGCCTAAATCCTGCCATGTCTCACCCCACCTCCTTGCC
CGCCCGCCCGCCCGCCCGCCCTCCCTCCCTCCCTCCCTCCCTCCCTAGTC
CCTGGGCGACGAGTGTCCGGCGCTCGAGGAGTTGGACATATGCGGGGTTA
AGGGCGTAACGGCCGAGGGGATAGAGGCTTTGCTGCAGAAGACCAACCGG
CACACGGCAGGTGAGGGAGGGAGGGAGGGAGGGAGGGAGAAAGGTTCTTC
TTTGCCTGTGTGGACCGCACAATGTCCTCATCTCCCATTCTCCTTCCCTT
CCTCACTTCCTCCCTCCCTCCCTCCCTCCCTCCCTCTCTTCTTCAGACGA
TGCAAGCATGGACGTGGACCCCCCGCGGAAGGAGGGAAGGAAGGAAGGAA
GGAGGGAGGGAGGGAGGAAGCGGCTGAGGCGCTTGAAGATAAGGTACGCG
GGGTTGAACCGTGCGAACATTCAGGCAATAGAAGAGAGGTGGAGGGAGGA
GGTGGAATTTCTAAATTGAGCGAGGCAGGGAGGGAGGGGTGTACAGTGTT
GCACAAAGAACGATTGGACTATATGGTAAAAAAGGAAGCAAAACACACCA
AAAATCATATAAATTGAATTTCAAATCGATATCATCGACGGGGAG
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Coding sequence (CDS) from alignment at chr19:206960..209454+

>NO19G00530.1 ID=NO19G00530.1|Name=NO19G00530.1|organism=Nannochloropsis oceanica|type=CDS|length=1038bp|location=Sequence derived from alignment at chr19:206960..209454+ (Nannochloropsis oceanica)
ATGAGCAATCGGGAGGGCAACACCCTGAAAGATGTAGCCATGCGGATCAT
TTTGAGTTTCCCAGCGAAAGCTTTGACGGCGGCGGCGGTGGAAAGAGCTG
ATGCAGTCCTTTCGCACGACAAGGAAGGCCGCCAAACTGTGAAGCAAGAA
GTGATCGACGCCTTGATCAAAGACAACCGGTTCCTGGACGAGACGATGCC
GTTGTCATTCTACGAAGAGGACCAACGGAGACTTTCGTTCAAAGGCGCCA
GTAAGATGACAGAATCCCTCCTTGAGCAAGTCTGCGCCATCATTCCTGCC
CTTGAGTGCCTAGACCTTTCGGCCTGCTTTTCGTTGACAGACAGCGCCTT
GCCCCTCGCCCTAAGTCATTGCCCGTCCCTCAAGACCTTAAAGCTGGAGA
ACTGCCGCAAGCTGACAGACGCGGCTTTCGATCACATTGTAAAGTTTAAC
AGGCAGCTGCAAGCCCTGCACGTGGGCGGCAACTTCAACATGACGCAAGA
GGGGCTCATCCGCCTCCTCTCCACCCACCCCAACCGCGCCAACTTCGAGG
AATTCTACTGCTCTGGCATCCACTTCACCTCCCCCCTCCTCCTCGCCCTC
GCTGCGCATTGCCCCACACTAAGGGGTTTGGGGATCGGATATAATCATTT
GATGACCGAAGAGGCTCTCTTAACCCTCCTGCGGCATTTGAAGCGGCTTC
GTTCGCTGCACGTGCCCTGGTGCCAACGGGCCATCACCGACTCCCTCCTC
CAGTCCCTGGGCGACGAGTGTCCGGCGCTCGAGGAGTTGGACATATGCGG
GGTTAAGGGCGTAACGGCCGAGGGGATAGAGGCTTTGCTGCAGAAGACCA
ACCGGCACACGGCAGACGATGCAAGCATGGACGTGGACCCCCCGCGGAAG
GAGGGAAGGAAGGAAGGAAGGAGGGAGGGAGGGAGGAAGCGGCTGAGGCG
CTTGAAGATAAGGTACGCGGGGTTGAACCGTGCGAACATTCAGGCAATAG
AAGAGAGGTGGAGGGAGGAGGTGGAATTTCTAAATTGA
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Synonyms
Publications