NO19G00430.1, NO19G00430.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO19G00430.1
Unique NameNO19G00430.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length932
Alignment locationchr19:165912..167750 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr19genomechr19:165912..167750 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO19G00430.1 vs.
Match: CBJ48376.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 99.4 bits (246), Expect = 1.300e-17
Identity = 51/121 (42.15%), Postives = 79/121 (65.29%), Query Frame = 0 
Query:    7 FDPAKSQVSHEAQLLWLRSPITGDLTEVPGIGPKHAEHLHAKD----IHTTHQLIGEYLKMKGKD-----VDPKMHAQHFYDHIQAYGVSSHRTDVVDAIASKVSMWLPGMYDASAFHHTA 119
            +DP +S+VS +    ++RS +TGDLTEVPGI  + AE L   +    +  T+QLIG++L ++G D     VD   H   F+  +QA G++S+R+ +V+AIA KV+ W+PG+YDA ++  TA
Sbjct:    6 YDPKRSKVSDDKLAEFIRSAVTGDLTEVPGIAARGAEILADGEGDDKVTNTYQLIGKFLALRGPDKTDHEVDSVEHCDKFWYWLQAKGINSNRSGIVNAIAEKVNTWIPGIYDADSYTDTA 126
The following BLAST results are available for this feature:
BLAST of NO19G00430.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
CBJ48376.11.300e-1742.15conserved unknown protein [Ectocarpus siliculosus][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO19G00430NO19G00430Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO19G00430.1NO19G00430.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO19G00430.1.cds1NO19G00430.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G00430.1.cds2NO19G00430.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G00430.1.cds3NO19G00430.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G00430.1.cds4NO19G00430.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G00430.1.cds5NO19G00430.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G00430.1.cds6NO19G00430.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G00430.1.cds7NO19G00430.1.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO19G00430.1 ID=NO19G00430.1|Name=NO19G00430.1|organism=Nannochloropsis oceanica|type=mRNA|length=932bp
ACAGCCACTACCGCTACCACCACTTCTCCACCAACAACAATGACGAAGCA
TGGCACCTTCGACCCTGCCAAATCCCAGGTCTCCCACGAGGCCCAGCTCC
TGTGGCTCCGGTCACCCATCACGGGAGATCTGACCGAGGTGCCCGGCATC
GGCCCCAAACATGCCGAGCATCTGCACGCTAAGGATATTCACACCACCCA
TCAGCTCATCGGCGAGTACCTCAAGATGAAGGGCAAGGACGTCGATCCCA
AGATGCATGCGCAGCATTTCTATGATCATATTCAGGCGTACGGAGTCAGC
TCTCACCGTACGGACGTGGTGGATGCCATCGCGTCGAAGGTCTCCATGTG
GCTGCCCGGCATGTATGATGCTTCTGCCTTTCATCACACCGCTGGCCCCA
CCACGGAGGGAAAGAACGAGCATGAGCTTATTGCTGTTGCTGCCACTGAT
ACTACAGCTGCTACTGCTGCTGCTGCTGCTGCTGTTGCTGTTGCTGCTGT
TGCTGCTGTTGCTGCTGCTGCTGTTCCTACCTCGGAGGAGGAGGGCGGAA
AAAAGGAGGTGGAGGGGGCGACAGCTGTGGAAATGGCGCCTGAAGCATCA
CCCGTGGAAACGAATTAGAGATAACGGACGAAAGAAGGAGGTGAGGAGGT
GAGGGCAGGTAAGGCAAGGAGGGAGGGAGGGAGGGAGGGGGGAAGGATCC
GTTGACATGCGTCTATTTTTTCCTCTGCCTCTCTCTCTCTGTCTCTCTCT
CTTCTTTCTCTCTGCCCCCCTCTCTCTTTCCCCGAACTTCCTCTTTTTGG
GCCGTCTTAGTCTGTTGTTTCTATTTCGTTGTCGAAGAGAGGGAGGCAGG
GAGGGAAGGAGGGAGAGAAGGGGGGAGTCTACAAAGGACCTGTCAGCTCA
ACTCCAAAATTTTCTCCTGCCGCTTCCTCTTC
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protein sequence of NO19G00430.1

>NO19G00430.1-protein ID=NO19G00430.1-protein|Name=NO19G00430.1|organism=Nannochloropsis oceanica|type=polypeptide|length=193bp
MTKHGTFDPAKSQVSHEAQLLWLRSPITGDLTEVPGIGPKHAEHLHAKDI
HTTHQLIGEYLKMKGKDVDPKMHAQHFYDHIQAYGVSSHRTDVVDAIASK
VSMWLPGMYDASAFHHTAGPTTEGKNEHELIAVAATDTTAATAAAAAAVA
VAAVAAVAAAAVPTSEEEGGKKEVEGATAVEMAPEASPVETN*
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mRNA from alignment at chr19:165912..167750-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO19G00430.1 ID=NO19G00430.1|Name=NO19G00430.1|organism=Nannochloropsis oceanica|type=mRNA|length=1839bp|location=Sequence derived from alignment at chr19:165912..167750- (Nannochloropsis oceanica)
ACAGCCACTACCGCTACCACCACTTCTCCACCAACAACAATGACGGTACG
TACCGTGCTCCCTTGTGTGTGCGTCAATACGTGCCCGTCTCGTTCTTTTC
CTCTTCCCATCCGCTTCCATTTCCCAACCACCAAACCCGTCTCTTTTATC
TTCATCTCTCTTGCACAGAAGCATGGCACCTTCGACCCTGCCAAATCCCA
GGTCTCCCACGAGGCCCAGCTCCTGTGGTAGGTACATGCATGGCCCGTCC
ACCTGCTTATTTGCTGTCTGCGTGCGTGGAGCGCTGGGTTGACGTATCGT
GGCCTTTCTCTTCCCTCTCCATGCTTTTCTTCCTTCCAACTTTCTTCCCT
TCCGCTGCCCTCGTCCCCTCCTCCCCCCCTACTCTCTGTCCTTCTCTCGC
CTAACGTCCTTCTCTCCCTCTTGTGCATCGTTATCTTCGCTGTCTTATTT
CTCTTCTGTGTGTCTATTCCACACATCCGTCCAACCACATGGCACCATTT
ACAGGCTCCGGTCACCCATCACGGGAGATCTGACCGAGGTGCCCGGCATC
GGTACGTCCCTCTTCTCCTCCCTCCCTCCATCCTTCCTTCCCTTTCTCGT
TCCCTCCCTCCCTCGTTCTATCTCATTTCACCTTCCCACCTTCCTTCCTC
TTCCTACCTCCCTTTCCACCTCTTCATTTCTCCTGCCAGGCCCCAAACAT
GCCGAGCATCTGCACGCTAAGGATATTCACACCACCCATCAGCTCATCGG
CGAGGTACCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTGCCTTGC
TCCTTTGCTCATTTCTCTTCTCATGACATCAAGAATTGCTAACCCTCCTG
TCCCTCTCTCCCTTCCTCAGTACCTCAAGATGAAGGGCAAGGACGTCGAT
CCCAAGGTCAACAAATATCTCACAGGAGGGGGGGAAGGAGGGAGGGAGGG
AGGGAGGGAGAGAGGGGCATGAAAGCACATGAAGGCCTCCCACCCCGGCA
TCTCGCCCCTCCCTCCCTCCCGCCTTCCTTCCTCCCTCAGATGCATGCGC
AGCATTTCTATGATCATATTCAGGCGTACGGAGTCAGCTCTCACCGTACG
GACGTGGTGGATGCCATCGCGTCGAAGGTCAGGAGGGGGAGGAAGGGAGG
GGGAAGAAGGAGAAGGAGAAGGAGAAAGGGACTATGGGGTTTTCTTCACA
GCCCGAACCACTCCCTCCCTCCCCCCTCCCCCCTGCCCTCCCTCAGGTCT
CCATGTGGCTGCCCGGCATGTATGATGCTTCTGCCTTTCATCACACCGCT
GGCCCCACCACGGAGGGAAAGAACGAGCATGAGCTTATTGCTGTTGCTGC
CACTGATACTACAGCTGCTACTGCTGCTGCTGCTGCTGCTGTTGCTGTTG
CTGCTGTTGCTGCTGTTGCTGCTGCTGCTGTTCCTACCTCGGAGGAGGAG
GGCGGAAAAAAGGAGGTGGAGGGGGCGACAGCTGTGGAAATGGCGCCTGA
AGCATCACCCGTGGAAACGAATTAGAGATAACGGACGAAAGAAGGAGGTG
AGGAGGTGAGGGCAGGTAAGGCAAGGAGGGAGGGAGGGAGGGAGGGGGGA
AGGATCCGTTGACATGCGTCTATTTTTTCCTCTGCCTCTCTCTCTCTGTC
TCTCTCTCTTCTTTCTCTCTGCCCCCCTCTCTCTTTCCCCGAACTTCCTC
TTTTTGGGCCGTCTTAGTCTGTTGTTTCTATTTCGTTGTCGAAGAGAGGG
AGGCAGGGAGGGAAGGAGGGAGAGAAGGGGGGAGTCTACAAAGGACCTGT
CAGCTCAACTCCAAAATTTTCTCCTGCCGCTTCCTCTTC
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Coding sequence (CDS) from alignment at chr19:165912..167750-

>NO19G00430.1 ID=NO19G00430.1|Name=NO19G00430.1|organism=Nannochloropsis oceanica|type=CDS|length=579bp|location=Sequence derived from alignment at chr19:165912..167750- (Nannochloropsis oceanica)
ATGACGAAGCATGGCACCTTCGACCCTGCCAAATCCCAGGTCTCCCACGA
GGCCCAGCTCCTGTGGCTCCGGTCACCCATCACGGGAGATCTGACCGAGG
TGCCCGGCATCGGCCCCAAACATGCCGAGCATCTGCACGCTAAGGATATT
CACACCACCCATCAGCTCATCGGCGAGTACCTCAAGATGAAGGGCAAGGA
CGTCGATCCCAAGATGCATGCGCAGCATTTCTATGATCATATTCAGGCGT
ACGGAGTCAGCTCTCACCGTACGGACGTGGTGGATGCCATCGCGTCGAAG
GTCTCCATGTGGCTGCCCGGCATGTATGATGCTTCTGCCTTTCATCACAC
CGCTGGCCCCACCACGGAGGGAAAGAACGAGCATGAGCTTATTGCTGTTG
CTGCCACTGATACTACAGCTGCTACTGCTGCTGCTGCTGCTGCTGTTGCT
GTTGCTGCTGTTGCTGCTGTTGCTGCTGCTGCTGTTCCTACCTCGGAGGA
GGAGGGCGGAAAAAAGGAGGTGGAGGGGGCGACAGCTGTGGAAATGGCGC
CTGAAGCATCACCCGTGGAAACGAATTAG
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Synonyms
Publications