NO19G00410.1, NO19G00410.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO19G00410.1
Unique Name	NO19G00410.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1962
Alignment location	chr19:159346..162619 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr19	genome	chr19:159346..162619 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO19G00410.1 vs.
Match: EWM23544.1 (hypothetical protein Naga_100339g2 [Nannochloropsis gaditana])

HSP 1 Score: 169.5 bits (428), Expect = 2.900e-38
Identity = 117/229 (51.09%), Postives = 143/229 (62.45%), Query Frame = 0

Query:    1 MTTTSTTPNCSSHSRSRRLLPSLLLVLLLASSSLLLIEAFTPLRQVSPSTFLPLPSPSSAASPSSFCPFPRQSPLPHQI----RRDTSLYGLFGGKAAPAPEPPAKTGLFSGLLGKKTTSAASATTGPDGRKRRLVRKKVKAASSTREARKDVKKKDTKTE-GKKANMQRSTLQRDNSWDVIEKERVPLSSIVIGVGSAAAVGGYFFKRRWALRNEQLVNDFVDDMMGA 225
            MT++ T  +C      R    + L  +LL ++SL LI +FTPLR  S  TFLP     S+  P  FCP P    L        RR++ LYGLF  KA P+ EPP K  LF+ LLG  T    +AT    GRKR+LVRKKVK ASSTR + K +K+       G++   QRSTLQRDNSWDVIEK+RVPLSS+ IGVG  AAVGGYF KR WA RNE+L+ DFVDDM+ +
Sbjct:   34 MTSSFTMHHC------RHPFGTFLRHVLLIAASLPLISSFTPLRPPSTPTFLP-----SSPIPH-FCPSPHPLHLSPAASGPSRRESRLYGLFNNKATPSSEPPPKPSLFNRLLG--TPRTRTATEKGSGRKRKLVRKKVK-ASSTRASSKPIKQDAAGARPGERRATQRSTLQRDNSWDVIEKQRVPLSSVAIGVGGVAAVGGYFLKRHWAQRNERLITDFVDDMVSS 247

The following BLAST results are available for this feature:

BLAST of NO19G00410.1 vs.

BLAST of NO19G00410.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM23544.1	2.900e-38	51.09	hypothetical protein Naga_100339g2 [Nannochloropsi...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO19G00410	NO19G00410	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO19G00410.1	NO19G00410.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO19G00410.1.cds1	NO19G00410.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO19G00410.1.cds2	NO19G00410.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO19G00410.1.cds3	NO19G00410.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO19G00410.1.cds4	NO19G00410.1.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO19G00410.1.cds5	NO19G00410.1.cds5	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO19G00410.1.cds6	NO19G00410.1.cds6	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO19G00410.1.cds7	NO19G00410.1.cds7	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO19G00410.1.cds8	NO19G00410.1.cds8	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO19G00410.1.cds9	NO19G00410.1.cds9	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr19:159346..162619-
coding sequence from alignment at chr19:159346..162619-

mRNA sequence

>NO19G00410.1 ID=NO19G00410.1|Name=NO19G00410.1|organism=Nannochloropsis oceanica|type=mRNA|length=1962bp
CGCGCTTCAACCTTGATATGTTTATGGCACTGCCAGCCGCAGGCTAGCTA
TCCTTTCGCCTGTGCTGCAACTTGCCGTACTTCTTGTTTCGGTGGACAGT
CGGGTCTTAAGCAGAGCATGTCATGGCAATCCAAGCATTGCATCTGTCTG
GAGTCTTCTCTCACGCGCTGCGGCAAGGCACCTGATACTTGTCACCCGCT
CATTCATCTCATCCACATCCACCACCTGACCATAAGACGACGTACACCCA
CCCCATCCCGATACCCACCCACAGGAGGAGCCCCTGCATCCGAGGATCCG
TTGCTCCTGTAGCCTTGTGTTGTTGTGGAGCACAGGCATCTCAGGATGAC
GACGACCAGCACTACTCCTAACTGTAGCAGCCACAGCCGCAGCCGCAGAC
TCCTCCCCTCCCTCCTGCTAGTGCTGTTGCTCGCCTCCTCCTCCCTTCTC
CTGATCGAAGCCTTTACACCCTTAAGACAAGTCTCCCCCTCCACTTTTCT
TCCATTGCCTTCCCCCTCTTCCGCCGCATCCCCCTCCTCTTTCTGCCCCT
TCCCTCGCCAGTCACCACTACCACACCAAATAAGAAGAGACACCTCCCTC
TATGGTCTCTTCGGGGGGAAGGCAGCCCCGGCACCAGAACCCCCTGCCAA
GACCGGCTTGTTCAGTGGGTTGCTAGGGAAGAAGACGACAAGCGCGGCGT
CAGCAACCACGGGGCCCGATGGCCGCAAGAGGAGATTGGTCCGGAAGAAG
GTCAAGGCCGCGTCATCCACACGCGAGGCCCGGAAGGACGTGAAGAAGAA
GGACACCAAGACGGAAGGGAAGAAGGCGAATATGCAACGGTCGACGCTGC
AGAGGGATAACTCGTGGGACGTCATCGAGAAGGAGCGCGTTCCTCTTTCC
TCAATTGTCATCGGCGTGGGGTCAGCCGCGGCTGTGGGTGGATACTTTTT
TAAGCGACGCTGGGCCTTGCGGAACGAGCAGTTAGTCAATGACTTCGTTG
ATGACATGATGGGCGCAGGTATGGACACCAGCGAGCTCTACCGCATAGCC
ATGTCGTACAAAGCCAAACTGGGTCCGTTTGCTACCCCTCGCATCCTCAA
TGAGTACCTGAAGGCCGTGTTTCGCGCCCCCGACTTGTCATCTAGTTTCG
TGGAGGCCATGGATTTGGTGGTCAATCAGCTGTTAAAAGTGAAGGATCAG
GAGCTAGTCGACGCCATTGCCGAGATCGCACGTGAGATGGCCAAGGGACA
GGAATTTGTCGGCATGTCCATCCTCCTCTTCACCTTCGAGCGCATCCTAC
CCCCCGCACTGTCGGAGACGCAGCTCGAGCCCCTTCGCCGCGCCCTCGGG
AAGGCCCTCCCTGGGAACGTGGAAGACAACATGTTTGAGCTTGCCAAGGA
CGCCTATTCCCTCGAGGTGGAGTCCCTCTTCATTCGTGGAGAGAACCCGG
TGCTGGCCCCCGAGGGTTATGAGGTGATGGGTCTGCCTTTCGATGAGGCC
GAAAAAGTCTTTAAGCGCGTCAAGAGAAGCTACGAAGGGAATGACGCACA
GCATGACGGCGGGACGGAGGGTGGGGAAGACTTGGGGGCGAGTCTGATCG
TGCGACGGAAGGAGCCGTTGCATGACATGATCTACGGCAAGGCCGAGGAT
ATTGCAGACAAGTACATCGTGGGGTACAAGGAGGAAAAAGACAGGAAAAA
GGCAGCGAAACTCCGCGGAAACCGTCCACCCTCGTGGGACGAAACGGTCG
AGCGTATCTCCGAGATGGTGCTGACCAAGGAGGGAGAGCAAGTCATCGAG
TCTCTCCAAAAATTCCAATGTTTGCGATGCCAGCGTCTCACCACCCTCAT
GCCCGGACAGTTGGAAGAGGATATCTTTACGCCCGACTACAAATGTCCGC
AGTGTAAGAGCACCCGGGACATGGTGGTGAGGAAGAGCTAGAGGGAGGGA
GGGAGGGAGGGA

protein sequence of NO19G00410.1

>NO19G00410.1-protein ID=NO19G00410.1-protein|Name=NO19G00410.1|organism=Nannochloropsis oceanica|type=polypeptide|length=532bp
MTTTSTTPNCSSHSRSRRLLPSLLLVLLLASSSLLLIEAFTPLRQVSPST
FLPLPSPSSAASPSSFCPFPRQSPLPHQIRRDTSLYGLFGGKAAPAPEPP
AKTGLFSGLLGKKTTSAASATTGPDGRKRRLVRKKVKAASSTREARKDVK
KKDTKTEGKKANMQRSTLQRDNSWDVIEKERVPLSSIVIGVGSAAAVGGY
FFKRRWALRNEQLVNDFVDDMMGAGMDTSELYRIAMSYKAKLGPFATPRI
LNEYLKAVFRAPDLSSSFVEAMDLVVNQLLKVKDQELVDAIAEIAREMAK
GQEFVGMSILLFTFERILPPALSETQLEPLRRALGKALPGNVEDNMFELA
KDAYSLEVESLFIRGENPVLAPEGYEVMGLPFDEAEKVFKRVKRSYEGND
AQHDGGTEGGEDLGASLIVRRKEPLHDMIYGKAEDIADKYIVGYKEEKDR
KKAAKLRGNRPPSWDETVERISEMVLTKEGEQVIESLQKFQCLRCQRLTT
LMPGQLEEDIFTPDYKCPQCKSTRDMVVRKS*

mRNA from alignment at chr19:159346..162619-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO19G00410.1 ID=NO19G00410.1|Name=NO19G00410.1|organism=Nannochloropsis oceanica|type=mRNA|length=3274bp|location=Sequence derived from alignment at chr19:159346..162619- (Nannochloropsis oceanica)
CGCGCTTCAACCTTGATATGTTTATGGCACTGCCAGCCGCAGGCTAGCTA
TCCTTTCGCCTGTGCTGCAACTTGCCGTACTTCTTGTTTCGGTGGACAGT
CGGGTCTTAAGCAGAGCATGTCATGGCAATCCAAGCATTGCATCTGTCTG
GAGTCTTCTCTCACGCGCTGCGGCAAGGCACCTGATACTTGTCACCCGCT
CATTCATCTCATCCACATCCACCACCTGACCATAAGACGACGTACACCCA
CCCCATCCCGATACCCACCCACAGGAGGAGCCCCTGCATCCGAGGATCCG
TTGCTCCTGTAGCCTTGTGTTGTTGTGGAGCACAGGCATCTCAGGATGAC
GACGACCAGCACTACTCCTAACTGTAGCAGCCACAGCCGCAGCCGCAGAC
TCCTCCCCTCCCTCCTGCTAGTGCTGTTGCTCGCCTCCTCCTCCCTTCTC
CTGATCGAAGCCTTTACACCCTTAAGACAAGTCTCCCCCTCCACTTTTCT
TCCATTGCCTTCCCCCTCTTCCGCCGCATCCCCCTCCTCTTTCTGCCCCT
TCCCTCGCCAGTCACCACTACCACACCAAATAAGAAGAGACACCTCCCTC
TATGGTCTCTTCGGGGGGAAGGCAGCCCCGGCACCAGAACCCCCTGCCAA
GACCGGCTTGTTCAGTGGGTTGCTAGGGAAGAAGACGACAAGCGCGGCGT
CAGCAACCACGGGGCCCGATGGCCGCAAGAGGAGATTGGTCCGGAAGAAG
GTCAAGGCCGCGTCATCCACACGCGAGGCCCGGAAGGACGTGAAGAAGAA
GGACACCAAGACGGAAGGGAAGAAGGCGAATATGCAACGGTCGACGCTGC
AGAGGGATAACTCGGTACGTACGTGCTTGGGATGGGGATGGATAAAAGGG
GGGCGGGAGGGGGGGGCGACGGCCCTTCTCTTGCTTGCTTCCTCCCTTTT
GTCCTTCTTACCTTCCCTCCCTCCCTCCCCCCCTCCTCCCTCCCTCCCTC
CCTCCCCGTCTGCCTTTACAGTGGGACGTCATCGAGAAGGAGCGCGTTCC
TCTTTCCTCAATTGTCATCGGCGTGGGGTCAGCCGCGGCTGTGGGTGGAT
ACTTTTTTAAGCGACGCTGGGCCTTGCGGAACGAGCAGTTAGTCAATGAC
TTCGTTGATGACATGGTAAGTCCTCCCTCTCCCCCTCCTTTCCTCTTTCC
ATCTTTCCCTCCCTGAACCTATCCATCCCCTCCTCTCTCTCTTCTTCTTC
AATGAATAATGTGCAAAGCGTCAATATCACACCCTCCATCCCTCGCCCTC
CCTTCCTCAGATGGGCGCAGGTATGGACACCAGCGAGCTCTACCGCATAG
CCATGTCGTACAAAGCCAAACTGGGTCCGTTTGCTACCCCTCGCATCCTC
AATGAGTACCTGAAGGCCGTGTTTCGCGCCCCCGACTTGTCATCTAGTGT
ACGTCATCCGCCCGCCCTCCCGCCCTCCCTCCCTCCCTCCCTTTTTCCTT
CCTTTTTTCTTTGTCAATTGTTCTCATCCTCCCTCGCCACCCCCTCACTC
CCTCCCTCCCCCCGTCCCTTTTAGTTCGTGGAGGCCATGGATTTGGTGGT
CAATCAGCTGTTAAAAGTGAAGGATCAGGAGCTAGTCGACGCCATTGCCG
AGATCGCACGTGAGGTAGTGAGGGAGGAAGGAATGGGGGGAAAGCATGAA
GAAAAGGAGGAGGATGAAGTGGGAGATCGTGGGGGTGCATGACAAAGGAA
AAGAAGGGAGGAAGATGGGCCGAAGGGAGGGAGGGAGGGAGGGAGGGAGG
GAGGGAGGGAGGAAGGGAGGACGGCCTGACTCGTTTCTTGGCCCTGACAC
GTATTTGGACATTTTCCCTCCCTCCCTCCATTCCTCCCTCCCTCCCTCCA
GATGGCCAAGGGACAGGAATTTGTCGGCATGTCCATCCTCCTCTTCACCT
TCGAGCGCATCCTACCCCCCGCACTGTCGGAGACGCAGCTCGAGCCCCTT
CGCCGCGCCCTCGGGAAGGCCCTCCCTGGGAACGTGGAAGACAACATGTT
TGAGCTTGCCAAGGACGCCTATTCCCTCGGTACGCCCTCCCTCCCTCCCT
CCCTCCCTCCCATTTCCGACTCCCTGCTCCTTGATGTCCCTCTCTGAGCG
CCCCTCCCTCCCTCCCTCCCCTCCTCCCTCCCTCCCTCCTTGGCACAGAG
GTGGAGTCCCTCTTCATTCGTGGAGAGAACCCGGTGCTGGCCCCCGAGGG
TTATGAGGTGATGGGTCTGCCTTTCGATGAGGCCGAAAAAGTCTTTAAGC
GCGTCAAGAGAAGCTACGAAGGGAATGGTGCGTCCCTCCCTCCCTTCCTC
TTTTCCTCCCTCCCGCCCTCCCTCCCTCCCTGCGACTCCTCCTCTCCCTG
CGAGACACCCCCCTCTCCTCCTCCCTCCTCACCTCCCTGACTTCCCTCCC
TCCCTCCCTCTCTCTTTCCAGACGCACAGCATGACGGCGGGACGGAGGGT
GGGGAAGACTTGGGGGCGAGTCTGATCGTGCGACGGAAGGAGCCGTTGCA
TGACATGATCTACGGCAAGGCCGAGGATATTGCAGGTGAGCACGCCCTCC
CTCCCTCCCTCATAATCCCTCCCTCCCTTCCTCCCTCTCTTCCTCCCTCC
CTCTCTTCTTTTCTTGGACTCGCCTGCCAGGAAACTGACCCCTTGGCTTG
TCGTCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCT
TCCCTCCCTCCCTGTTCCTCCTCAGACAAGTACATCGTGGGGTACAAGGA
GGAAAAAGACAGGAAAAAGGCAGCGAAACTCCGCGGAAACCGTCCACCCT
CGTGGGACGAAACGGTCGAGCGTATCTCCGAGATGGTGCTGACCAAGGAG
GGAGAGCAAGTCATCGAGGTGAGGAGTCCTGCCCTACCCTCCCTCCCTCC
TTCTTTTCTTCCTATCCTCTCACTGATTCTCCACACACCTCCTGCCATCC
CCCCTTCCTCCATCCCTCCCAACCCTCCCTCCCTCCTTCCGCCATACCTT
GTTTTCACTGATTTCTTTCTCACCCCTCCTTCCCTCCCTCCCTCCCTCCC
TCCCTCCTCCAGTCTCTCCAAAAATTCCAATGTTTGCGATGCCAGCGTCT
CACCACCCTCATGCCCGGACAGTTGGAAGAGGATATCTTTACGCCCGACT
ACAAATGTCCGCAGTGTAAGAGCACCCGGGACATGGTGGTGAGGAAGAGC
TAGAGGGAGGGAGGGAGGGAGGGA

Coding sequence (CDS) from alignment at chr19:159346..162619-

>NO19G00410.1 ID=NO19G00410.1|Name=NO19G00410.1|organism=Nannochloropsis oceanica|type=CDS|length=1596bp|location=Sequence derived from alignment at chr19:159346..162619- (Nannochloropsis oceanica)
ATGACGACGACCAGCACTACTCCTAACTGTAGCAGCCACAGCCGCAGCCG
CAGACTCCTCCCCTCCCTCCTGCTAGTGCTGTTGCTCGCCTCCTCCTCCC
TTCTCCTGATCGAAGCCTTTACACCCTTAAGACAAGTCTCCCCCTCCACT
TTTCTTCCATTGCCTTCCCCCTCTTCCGCCGCATCCCCCTCCTCTTTCTG
CCCCTTCCCTCGCCAGTCACCACTACCACACCAAATAAGAAGAGACACCT
CCCTCTATGGTCTCTTCGGGGGGAAGGCAGCCCCGGCACCAGAACCCCCT
GCCAAGACCGGCTTGTTCAGTGGGTTGCTAGGGAAGAAGACGACAAGCGC
GGCGTCAGCAACCACGGGGCCCGATGGCCGCAAGAGGAGATTGGTCCGGA
AGAAGGTCAAGGCCGCGTCATCCACACGCGAGGCCCGGAAGGACGTGAAG
AAGAAGGACACCAAGACGGAAGGGAAGAAGGCGAATATGCAACGGTCGAC
GCTGCAGAGGGATAACTCGTGGGACGTCATCGAGAAGGAGCGCGTTCCTC
TTTCCTCAATTGTCATCGGCGTGGGGTCAGCCGCGGCTGTGGGTGGATAC
TTTTTTAAGCGACGCTGGGCCTTGCGGAACGAGCAGTTAGTCAATGACTT
CGTTGATGACATGATGGGCGCAGGTATGGACACCAGCGAGCTCTACCGCA
TAGCCATGTCGTACAAAGCCAAACTGGGTCCGTTTGCTACCCCTCGCATC
CTCAATGAGTACCTGAAGGCCGTGTTTCGCGCCCCCGACTTGTCATCTAG
TTTCGTGGAGGCCATGGATTTGGTGGTCAATCAGCTGTTAAAAGTGAAGG
ATCAGGAGCTAGTCGACGCCATTGCCGAGATCGCACGTGAGATGGCCAAG
GGACAGGAATTTGTCGGCATGTCCATCCTCCTCTTCACCTTCGAGCGCAT
CCTACCCCCCGCACTGTCGGAGACGCAGCTCGAGCCCCTTCGCCGCGCCC
TCGGGAAGGCCCTCCCTGGGAACGTGGAAGACAACATGTTTGAGCTTGCC
AAGGACGCCTATTCCCTCGAGGTGGAGTCCCTCTTCATTCGTGGAGAGAA
CCCGGTGCTGGCCCCCGAGGGTTATGAGGTGATGGGTCTGCCTTTCGATG
AGGCCGAAAAAGTCTTTAAGCGCGTCAAGAGAAGCTACGAAGGGAATGAC
GCACAGCATGACGGCGGGACGGAGGGTGGGGAAGACTTGGGGGCGAGTCT
GATCGTGCGACGGAAGGAGCCGTTGCATGACATGATCTACGGCAAGGCCG
AGGATATTGCAGACAAGTACATCGTGGGGTACAAGGAGGAAAAAGACAGG
AAAAAGGCAGCGAAACTCCGCGGAAACCGTCCACCCTCGTGGGACGAAAC
GGTCGAGCGTATCTCCGAGATGGTGCTGACCAAGGAGGGAGAGCAAGTCA
TCGAGTCTCTCCAAAAATTCCAATGTTTGCGATGCCAGCGTCTCACCACC
CTCATGCCCGGACAGTTGGAAGAGGATATCTTTACGCCCGACTACAAATG
TCCGCAGTGTAAGAGCACCCGGGACATGGTGGTGAGGAAGAGCTAG

Synonyms

Publications