NO19G00200.1, NO19G00200.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO19G00200.1
Unique NameNO19G00200.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1775
Alignment locationchr19:76495..80638 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr19genomechr19:76495..80638 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO19G00200.1 vs.
Match: CCI39789.1 (unnamed protein product [Albugo candida])

HSP 1 Score: 164.5 bits (415), Expect = 8.700e-37
Identity = 123/359 (34.26%), Postives = 191/359 (53.20%), Query Frame = 0
Query:  129 TATEILAAKIDPR---RNRPNTD--KLFDVVNFLQRVPEHRPVSADELLKEIGVDLRPDGGLDTCVNELLEGHPKVRVVPDRPGWFQYQAKYEIKNRGQLLAWLTRYNQGLAEADVKDTYLGVTHDLREMVRAGEVIAVKD-DGGRPVYFPRGRPFLVSLSGVGQRLRRVEGEDGSGQVSTTKDLRCEIRRGEGVRVAGEWFRVNTLESRKVQRLRAEPPLSISSGAGRRKWPPPD-YTEERVGYKEPFSLQDGLPLDHAPRMRHEQQHGREEGKNEDDGQALP-------LVRHGCTVDVRDLLWAATRQHVPTDEKELRARLQEAALGAHHAGPRRPKMSAATLKSQANKRKKQDKE 474
            +AT ++  K  P+    N P  D  K+++++ +L++VP H+PVS  ++ +  GVDL    G+D  V+  L+ +PKVRVV DR   + YQAKY+IKN+ QLL  L R  +G+   D+ D Y+ V  DL+ + R+GEVI VK  + G  V++PR   FLV +SGV         E GS   ++++D+  EIRRG+ +++   WFRV    S  V+   A  P   S  + +      D  T ++V Y   F  +D +P+D AP              + D   ALP       + +HGCT D+R+ LW  T ++ PTD  E   +L +A L        + K+ A+  + Q+ +R K+DK+
Sbjct:   16 SATTVIPIKEAPQIDISNVPKNDGAKVYNILEYLRKVPMHQPVSIKDIFQHTGVDL----GVDDQVDHRLKNNPKVRVVGDR---YAYQAKYDIKNKTQLLKMLDRTPEGIPTEDLMDCYVDVERDLQALARSGEVICVKHAEKGAEVFYPRDMSFLVDVSGV------ATVEPGSYITNSSQDVTNEIRRGDAIKIGNHWFRV----SGAVKTSSASRPAPFSGMSSKSVSSVRDPNTSKKVRYLFKFD-KDHMPID-AP----FPDASNNTAASMDRWDALPRRGPKFQMTKHGCTNDIRE-LWQNTMRNFPTDRNEFYKKLVQAGL------TTQSKVDAS--RRQSKRRLKEDKK 342          
The following BLAST results are available for this feature:
BLAST of NO19G00200.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
CCI39789.18.700e-3734.26unnamed protein product [Albugo candida][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO19G00200NO19G00200Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO19G00200.1NO19G00200.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO19G00200.1.cds1NO19G00200.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G00200.1.cds2NO19G00200.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G00200.1.cds3NO19G00200.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G00200.1.cds4NO19G00200.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G00200.1.cds5NO19G00200.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G00200.1.cds6NO19G00200.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G00200.1.cds7NO19G00200.1.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G00200.1.cds8NO19G00200.1.cds8Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G00200.1.cds9NO19G00200.1.cds9Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G00200.1.cds10NO19G00200.1.cds10Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G00200.1.cds11NO19G00200.1.cds11Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G00200.1.cds12NO19G00200.1.cds12Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO19G00200.1 ID=NO19G00200.1|Name=NO19G00200.1|organism=Nannochloropsis oceanica|type=mRNA|length=1775bp
GAACAAGTTAAGTCACGGCGCACCAACCCGGAAGACTTTTCATGAAGGCC
GCACGCAAACACATTATTATTCTCAAGCCACAGAGACGACTCCCACCACA
AGGCTTCACCAGTACCAGCAGAAGCACCTGCAGTAGCTATCGAAAGCTCT
TATCCGGGCTTCGTGCCGCACAGACTTCGCCAACACTTGCTTTATTTTCT
CTTTCTCCTCCCCCCTTACTCCCCCTTTCACAACACTACCTACAGAGGCA
GTGTCCAATGGCGGACCCGCGGGAAAAGATCTCGTATGGCTTCCAGTTCC
TCTCTCAGGTCGAGGAAAAGGGCCCAGGCAAGGTAGCAGGTGGAGCAGGA
GGTGCCGGCGTACAAGGTCAACAACAACAGCAGCAGCAGCAGCAGCAAGC
ACCCTCTCCCCCTGTGCCTCGACGAACGGCGACAGAAATTCTAGCAGCGA
AAATTGACCCCCGTCGCAACCGTCCGAACACAGACAAGCTGTTCGACGTG
GTCAATTTTCTGCAGCGCGTGCCCGAGCATCGACCGGTGTCGGCAGACGA
GCTCCTGAAGGAAATTGGCGTCGACCTGCGGCCAGACGGAGGGCTGGACA
CATGCGTGAATGAACTGCTGGAAGGCCATCCCAAGGTCCGCGTGGTTCCC
GATAGGCCGGGGTGGTTTCAGTATCAAGCCAAGTACGAGATCAAGAACCG
AGGACAGCTCCTTGCCTGGCTCACGCGTTACAACCAGGGCCTTGCCGAGG
CTGATGTGAAAGATACCTACCTCGGCGTCACCCACGACCTACGAGAGATG
GTGCGAGCCGGAGAGGTGATAGCAGTGAAGGATGACGGTGGTCGCCCCGT
CTACTTCCCTCGAGGGAGGCCCTTCCTCGTGTCTCTCTCCGGCGTCGGGC
AAAGGCTGCGGCGGGTGGAGGGGGAGGACGGAAGCGGGCAGGTCAGCACT
ACCAAGGACTTACGGTGTGAGATCCGACGAGGGGAGGGAGTGCGCGTGGC
CGGGGAGTGGTTTCGGGTCAACACCCTCGAAAGCCGCAAGGTGCAGCGCC
TACGGGCGGAGCCCCCTCTTTCGATTTCTTCGGGAGCCGGTCGTCGCAAA
TGGCCACCACCCGATTACACGGAGGAGAGAGTTGGCTACAAAGAGCCTTT
CTCCCTGCAGGACGGCCTGCCCCTCGACCACGCCCCCCGCATGAGGCACG
AGCAGCAACACGGGCGGGAGGAGGGCAAGAACGAGGACGACGGACAGGCC
CTGCCCCTGGTCCGACACGGGTGCACCGTCGACGTGCGGGACTTGCTCTG
GGCTGCGACGAGGCAACACGTCCCCACCGACGAGAAGGAGCTTCGAGCCC
GCTTGCAGGAGGCGGCCTTGGGAGCTCACCACGCCGGTCCTCGTCGGCCA
AAAATGAGTGCCGCTACCCTCAAGAGCCAGGCCAACAAGAGGAAAAAACA
GGACAAGGAGGCGGCGTGGCGGGACGACATCCGAGCCAAGGCCGCGGCCA
TTCAAGCCATGCAGCAACAGGCCAAGAAGAAGATCAAAAAGTAGGAATGG
GGTGGAGCACGAGGGAGGAAAGTAGGAACAGAGGGAGGGAGGAAAGGAAG
GAGGGGGTTGAAATCGTGTTGCAGTAGCCTGGTTAGGCACAGCAAAGGTC
GAAAATAAAGATGGGAGAGGACCATGTAGTGTAAATATGATAGCCAGGAC
GCATATGAAGGTCATGTTTATGTCATGTACCACATAAGAGACGAAGAAAA
AGTAAAAAGACAAACGATGCGGATG
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protein sequence of NO19G00200.1

>NO19G00200.1-protein ID=NO19G00200.1-protein|Name=NO19G00200.1|organism=Nannochloropsis oceanica|type=polypeptide|length=501bp
MKAARKHIIILKPQRRLPPQGFTSTSRSTCSSYRKLLSGLRAAQTSPTLA
LFSLSPPPLLPLSQHYLQRQCPMADPREKISYGFQFLSQVEEKGPGKVAG
GAGGAGVQGQQQQQQQQQQAPSPPVPRRTATEILAAKIDPRRNRPNTDKL
FDVVNFLQRVPEHRPVSADELLKEIGVDLRPDGGLDTCVNELLEGHPKVR
VVPDRPGWFQYQAKYEIKNRGQLLAWLTRYNQGLAEADVKDTYLGVTHDL
REMVRAGEVIAVKDDGGRPVYFPRGRPFLVSLSGVGQRLRRVEGEDGSGQ
VSTTKDLRCEIRRGEGVRVAGEWFRVNTLESRKVQRLRAEPPLSISSGAG
RRKWPPPDYTEERVGYKEPFSLQDGLPLDHAPRMRHEQQHGREEGKNEDD
GQALPLVRHGCTVDVRDLLWAATRQHVPTDEKELRARLQEAALGAHHAGP
RRPKMSAATLKSQANKRKKQDKEAAWRDDIRAKAAAIQAMQQQAKKKIKK
*
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mRNA from alignment at chr19:76495..80638-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO19G00200.1 ID=NO19G00200.1|Name=NO19G00200.1|organism=Nannochloropsis oceanica|type=mRNA|length=4144bp|location=Sequence derived from alignment at chr19:76495..80638- (Nannochloropsis oceanica)
GAACAAGTTAAGTCACGGCGCACCAACCCGGAAGACTTTTCATGAAGGCC GCACGCAAACACATTATTATTCTCAAGCCACAGAGACGACTCCCACCACA AGGCTTCACCAGTACCAGCAGAAGCACCTGCAGTAGCTATCGAAAGCTCT TATCCGGGCTTCGTGCCGCACAGACTTCGCCAACACTTGCTTTATTTTCT CTTTCTCCTCCCCCCTTACTCCCCCTTTCACAACACTACCTACAGAGGCA GTGTCCAATGGCGGACCCGCGGGAAAAGATCTCGTATGGCTTCCAGTTCC TCTCTCAGGTCGAGGAAAAGGGCCCAGGCAAGGTAGCAGGTGGAGCAGGA GGTGCCGGCGTACAAGGTCAACAACAACAGCAGCAGCAGCAGCAGCAAGC ACCCTCTCCCCCTGTGCCTCGACGAACGGCGACAGAAATTCTAGCAGCGA AGTATGTACAGGGTAGTTAGATGGAGGAGGAGAGGATATAGGTAGATTGA GAGAGGCTTGCCTGTACCCATGAGTCCTATTATCGCGTGCGTCTTATCGC TTACCAACACATCCCTTCCTCCCTGCCCTCCCTCCCTCCCTCCAACCCCG CTTCCATCGTTCCACTCCTTTTTTCAACTTCCTCGACGAAGAATTGACCC CCGTCGCAACCGTCCGAACACAGACAAGCTGTTCGACGTGGTCAATTTTC TGCAGCGCGTGCCCGAGCATCGACCGGTGTGCGAGGCGGGGAGAGGGAGG GGGAGGGAGAGAGGGAAAGAGGGCAAGTAGAGGCAGGGCGGGTGGAGTGT AAATGTTTGCCTCTGCAGTCCATTTCGACCGCAGCGTGCCGAGAGAGGGG AGAGGAATTTACGATTCCCATCTGATTATATTCCCCTCCTCTCCCTCCGT TCCTCCCTCCGTCCCTACCTCCCTCCCTCCCAGGTGTCGGCAGACGAGCT CCTGAAGGAAATTGGCGTCGACCTGCGGCCAGACGGAGGGCTGGACACAT GCGTGAATGAACTGCTGGAAGGCCATCCCAAGGTAACGAGGGAGGAAGGG AGGGAGGAGGGGGGGAGAGGATGATGAACCCTAGAAAGTTTCGAGGAAAA CAAAGGCCGCGCAAACGCTTTTCTTTTTCTCTTCTCCTCTTTCCCTCCCT CCTTCCCTTTCTAGGTCCGCGTGGTTCCCGATAGGCCGGGGTGGTTTCAG TATCAAGCCAAGTACGAGATCAAGAACCGAGGACAGCTCCTTGCCTGGCT CACGCGTTACAACCAGGTACCTCCCTCCCTCCCTCCCTCCCTCCCTCCCT CCCTCCCTCCGGCTGGGCCTCCCTCTCTTCCTTTGGGCCTTCTTGAAGTA CATCATTCATGACCGAAACGATTCTTCTCCTGACCCCTCCCTCCCTCCCT CCCTCCCTTTCACCCTCCCTCTCACCCTCAGGGCCTTGCCGAGGCTGATG TGAAAGATACCTACCTCGGCGTCACCCACGACCTACGAGAGATGGTGCGA GCCGGAGAGGTGATAGCAGTGAAGGTATGTACGTTCCTTGCCCTCCCTCC CTCCCTCCTTCCCTCCCTTCCTACCTCCCATCGTCTGTTGCTTTTTCACT TTCCCTCCCTCCTACCCTCCCTCCCCCCTTCCCTCCTTTCGACGCCCCTC TCACGAATGGCACCCCCCCAAGGCCCTCAGGGCATGCGATGTTCATTATC CCTCCCTCCCTCCCTCTCCAGGATGACGGTGGTCGCCCCGTCTACTTCCC TCGAGGGAGGCCCTTCCTCGTGTCTCTCTCCGGCGTCGGGCAAAGGCTGC GGCGGGTGGAGGGGGAGGACGGAAGCGGGCAGGTCAGCACTACCAAGGGT AAGGAGGGAGGGAGGGAGGGAGGGAGAGAGGGAGGGAGGGAGGGAGGGAG GGAATGCAAGTGGCTGCGTGGCCGACCCAGGATCTACTCACTCACTCACC CACCCACTCACTCACTTACTCACTTACTCACGTATCGACAGACTTACGGT GTGAGATCCGATGAGGAGAGTCACGCTCCAACTCACTCACTTACTCACTC ACACACGTACATTCAGACTTACGGTGTGAGATCCGACGAGGAGAGTCACG CTCCAACTCACTCACTTACTCACTCACACACGTACATACAGACTTACGGT GTGAGATCCGACGAGGAGAGTCACGCTCCAACTCACTCACTTACTCACTC ACACACGTACACACAGACTTACGGTGTGAGATCCGACGAGGGGAGGGAGT GCGCGTGGCCGGGGAGTGGTTTCGGGTCAACACCCTCGAAAGCCGGTAAG CCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCT CCTCCTTTCCACTCCTCGTTGACTGATCCTCTCCCTGCGGTTACCCGTCC TGTTCCCTTCCCTCCTCTACGCTCCCAAATACGACGCCTGGAAGCTGGTC ATTCTCTCTACTTATCTTTTTTCATTCCTCCCTCCCTCCCCCCCTCCCTC CCTCCTTCCCTCTTACAGCAAGGTGCAGCGCCTACGGGCGGAGCCCCCTC TTTCGATTTCTTCGGGAGCCGGTCGTCGCAAATGGCCACCACCCGATTAC ACGGTAGGTAGGTAGGTAGGGAGGGAGGGAGGGAGGGAGTTAAGATGAAG AATCTGTGCGGGGGGAAAGGAAGAATGACATGACATGAAGAGAAAGAAGA GAAGATGGAGAAGAGGGAGAAAGAAGAGGAGGAAGAAGAATGGGAGGGGG AATAGAGGGCAGTAGAGGAGGCAAGTTGGTTTTGTTCGGAGGCCTTTCTG TCTTTCCCAGCGTGTCGGTCATGTGCATCATTTGTTGATGACAACCTATT CACGTATCCTACCCGGAACCCGGAAGGAGGAGAGAGTTGGCTACAAAGAG CCTTTCTCCCTGCAGGACGGCCTGCCCCTCGACCACGCCCCCCGCATGAG GCACGAGCAGCAACACGGGCGGGAGGAGGGCAAGAACGAGGACGACGGAC AGGGTGCGTGTGCTAGCCTATCTGTGCGCGAGTGTGTTTGACTGCCCCTC CCCTTCATCTCGGCCGATCTCTCTTCCTCCCCTTCATTATTCGACCAGGG ACTCGACGAGCTCTTAAGGAACCGTCTCCTTCTGCCCTCACCCACAATTT CCTCCCCCCTCTTTCCCTTTCTCCCTCCCTCCCTCCCTTCCTCCCTCCCT CCTTCCCTCCCTCCCTCCAGCCCTGCCCCTGGTCCGACACGGGTGCACCG TCGACGTGCGGGACTTGCTCTGGGCTGCGACGAGGCAACACGTCCCCACC GACGAGAAGGAGCTTCGAGCCCGCTTGCAGGAGGCGGCCTTGGGAGTAAG AGGGGAGGGAGGAAAAGGAGGCGGGAGCGAGGGGTAATAGAAAGTGGGCG AGGTACTCGCAGGACAAACCGTTCGATTCGAAAAACAGTATTTGCAAGTC AGGCTCACGTGCTTGCTGTTCCGTCCGTCTCTTCCCCCCCTCCCTCCCTC CCTCTTTCCCTCCCTCCCATTAGGCTCACCACGCCGGTCCTCGTCGGCCA AAAATGAGTGCCGCTACCCTCAAGAGCCAGGCCAACAAGAGGAAAAAACA GGTGCGTTAATGCCTGGTGGTAGATGCGCAGATCTACCATTTCCCTCTCT TTTCCAAACTCTTTTACTTATCACTTCGGCAACCAGGAAGAGAGGACGAT AAGAATCTGGTTGCGTGTTCATGGATACCCCCCTTCTCTCATCTACCCCT CCACTTCCTTCCCTCCCTCCATCCCTTCCTTCTTCCCTCCCTCCAACCCT CCCTCCACCTCCCTCTTCAGGACAAGGAGGCGGCGTGGCGGGACGACATC CGAGCCAAGGCCGCGGCCATTCAAGCCATGCAGCAACAGGCCAAGAAGAA GATCAAAAAGTAGGAATGGGGTGGAGCACGAGGGAGGAAAGTAGGAACAG AGGGAGGGAGGAAAGGAAGGAGGGGGTTGAAATCGTGTTGCAGTAGCCTG GTTAGGCACAGCAAAGGTCGAAAATAAAGATGGGAGAGGACCATGTAGTG TAAATATGATAGCCAGGACGCATATGAAGGTCATGTTTATGTCATGTACC ACATAAGAGACGAAGAAAAAGTAAAAAGACAAACGATGCGGATG
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Coding sequence (CDS) from alignment at chr19:76495..80638-

>NO19G00200.1 ID=NO19G00200.1|Name=NO19G00200.1|organism=Nannochloropsis oceanica|type=CDS|length=1503bp|location=Sequence derived from alignment at chr19:76495..80638- (Nannochloropsis oceanica)
ATGAAGGCCGCACGCAAACACATTATTATTCTCAAGCCACAGAGACGACT
CCCACCACAAGGCTTCACCAGTACCAGCAGAAGCACCTGCAGTAGCTATC
GAAAGCTCTTATCCGGGCTTCGTGCCGCACAGACTTCGCCAACACTTGCT
TTATTTTCTCTTTCTCCTCCCCCCTTACTCCCCCTTTCACAACACTACCT
ACAGAGGCAGTGTCCAATGGCGGACCCGCGGGAAAAGATCTCGTATGGCT
TCCAGTTCCTCTCTCAGGTCGAGGAAAAGGGCCCAGGCAAGGTAGCAGGT
GGAGCAGGAGGTGCCGGCGTACAAGGTCAACAACAACAGCAGCAGCAGCA
GCAGCAAGCACCCTCTCCCCCTGTGCCTCGACGAACGGCGACAGAAATTC
TAGCAGCGAAAATTGACCCCCGTCGCAACCGTCCGAACACAGACAAGCTG
TTCGACGTGGTCAATTTTCTGCAGCGCGTGCCCGAGCATCGACCGGTGTC
GGCAGACGAGCTCCTGAAGGAAATTGGCGTCGACCTGCGGCCAGACGGAG
GGCTGGACACATGCGTGAATGAACTGCTGGAAGGCCATCCCAAGGTCCGC
GTGGTTCCCGATAGGCCGGGGTGGTTTCAGTATCAAGCCAAGTACGAGAT
CAAGAACCGAGGACAGCTCCTTGCCTGGCTCACGCGTTACAACCAGGGCC
TTGCCGAGGCTGATGTGAAAGATACCTACCTCGGCGTCACCCACGACCTA
CGAGAGATGGTGCGAGCCGGAGAGGTGATAGCAGTGAAGGATGACGGTGG
TCGCCCCGTCTACTTCCCTCGAGGGAGGCCCTTCCTCGTGTCTCTCTCCG
GCGTCGGGCAAAGGCTGCGGCGGGTGGAGGGGGAGGACGGAAGCGGGCAG
GTCAGCACTACCAAGGACTTACGGTGTGAGATCCGACGAGGGGAGGGAGT
GCGCGTGGCCGGGGAGTGGTTTCGGGTCAACACCCTCGAAAGCCGCAAGG
TGCAGCGCCTACGGGCGGAGCCCCCTCTTTCGATTTCTTCGGGAGCCGGT
CGTCGCAAATGGCCACCACCCGATTACACGGAGGAGAGAGTTGGCTACAA
AGAGCCTTTCTCCCTGCAGGACGGCCTGCCCCTCGACCACGCCCCCCGCA
TGAGGCACGAGCAGCAACACGGGCGGGAGGAGGGCAAGAACGAGGACGAC
GGACAGGCCCTGCCCCTGGTCCGACACGGGTGCACCGTCGACGTGCGGGA
CTTGCTCTGGGCTGCGACGAGGCAACACGTCCCCACCGACGAGAAGGAGC
TTCGAGCCCGCTTGCAGGAGGCGGCCTTGGGAGCTCACCACGCCGGTCCT
CGTCGGCCAAAAATGAGTGCCGCTACCCTCAAGAGCCAGGCCAACAAGAG
GAAAAAACAGGACAAGGAGGCGGCGTGGCGGGACGACATCCGAGCCAAGG
CCGCGGCCATTCAAGCCATGCAGCAACAGGCCAAGAAGAAGATCAAAAAG
TAG
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Synonyms
Publications