NO18G02540.1, NO18G02540.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO18G02540.1
Unique Name	NO18G02540.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1572
Alignment location	chr18:827126..830541 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr18	genome	chr18:827126..830541 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO18G02540.1 vs.
Match: EWM23463.1 (hypothetical protein Naga_101315g2, partial [Nannochloropsis gaditana])

HSP 1 Score: 177.2 bits (448), Expect = 1.000e-40
Identity = 89/151 (58.94%), Postives = 121/151 (80.13%), Query Frame = 0

Query:    1 MDQSVSLGGSAPEQKPDTGTTGINWAEKRARVSQTAKETAEYIKVHGKETASYIKTQSSAAAGAAVASTRETKEEVVREWVKSTGLGSLIYKSIMPAHWKLPVISLGMTVLLLVVAIVILASFDSSAGGSLLILMLLPLTLLSQIVHNYCD 152
            MDQ+VSLGGSAPE++P T   G +WAEKR   S+T KETA Y++ HG++T +Y+KT  +AAAGAA A+++ T+EEVVREW+KSTGLGS++Y+S++P HW++P ISLG+T+ LL  AI I+    ++ GG+LLILMLL LTL +Q+VH YCD
Sbjct:    1 MDQTVSLGGSAPEERPATEAKGFDWAEKREEASRTVKETAAYLQEHGQKTVTYLKTHGAAAAGAAAATSQRTREEVVREWIKSTGLGSIVYRSLVPGHWRMPAISLGVTLALLAAAIAIVV---ATGGGALLILMLLVLTLFNQMVHAYCD 148

The following BLAST results are available for this feature:

BLAST of NO18G02540.1 vs.

BLAST of NO18G02540.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM23463.1	1.000e-40	58.94	hypothetical protein Naga_101315g2, partial [Nanno...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO18G02540	NO18G02540	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO18G02540.1	NO18G02540.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO18G02540.1.cds1	NO18G02540.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO18G02540.1.cds2	NO18G02540.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO18G02540.1.cds3	NO18G02540.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO18G02540.1.cds4	NO18G02540.1.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO18G02540.1.cds5	NO18G02540.1.cds5	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO18G02540.1.cds6	NO18G02540.1.cds6	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO18G02540.1.cds7	NO18G02540.1.cds7	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO18G02540.1.cds8	NO18G02540.1.cds8	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO18G02540.1.cds9	NO18G02540.1.cds9	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO18G02540.1.cds10	NO18G02540.1.cds10	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO18G02540.1.cds11	NO18G02540.1.cds11	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr18:827126..830541-
coding sequence from alignment at chr18:827126..830541-

mRNA sequence

>NO18G02540.1 ID=NO18G02540.1|Name=NO18G02540.1|organism=Nannochloropsis oceanica|type=mRNA|length=1572bp
TTGAAGTCATGTCGTGACAAATTGACGTTGCTCAGATGTGAGGTAAGATG
TGGCCCATGGGGCGCGCAGCAAGCTGCTGCTGCTTTCCGGCGAAGGAAAA
TAATCTACAACAGCGAACTCGGCTTCAGGTAGGAAACACCCAAATATCGG
CCCTGCATCCACACCATCAAGGTCAAGAACTTTGTTCTAAAGGTGCTGGA
AGGCTGAGTTGCAGGGCAATGGTGTGGCAGCGGTGAGAAGTGCAATACGA
TGTGCTCGGTGGATGATTTGCCGACCTCCCCACACATCACATTCCCTTAA
CACAGAACACAAACACACAGACATATAACACATCCCAACTTCCGACCGCC
AAGATGGACCAGAGCGTCTCTTTGGGTGGCTCTGCGCCGGAGCAAAAGCC
TGACACGGGCACCACGGGCATTAATTGGGCCGAAAAAAGGGCTAGGGTTT
CCCAGACCGCCAAGGAGACAGCAGAGTACATTAAGGTCCACGGCAAGGAG
ACTGCAAGCTACATCAAGACGCAAAGTTCTGCCGCTGCGGGCGCCGCTGT
TGCCAGCACTCGAGAAACGAAGGAGGAGGTGGTGCGTGAGTGGGTCAAGA
GTACGGGCCTGGGTTCATTAATTTATAAAAGTATCATGCCGGCGCATTGG
AAGCTCCCTGTCATCTCGCTGGGGATGACAGTCCTTCTGCTGGTTGTGGC
CATCGTCATTCTTGCCTCCTTCGACTCCAGCGCTGGCGGCTCTCTCCTCA
TTCTAATGCTGCTGCCTCTGACGCTACTCAGCCAGATCGTCCACAACTAC
TGCGACGCCGCCCTGATGCTCCAAGTGGCTCAAAGCAAGGACAGCAACGG
CGTGACCTCCCTCAAGAAGACAGCCGAGGGCCTCAACGGCAATTGGGAGC
CCATCCTAGGCCTCTCCATCGCCACATGGGCCGAGAGCGTCTACGCCCTC
ACCACGGCTATCGTCCGCGGCGTCATCTTCCTCTCCCAGCTTCCCTTCCG
CCTGTGCCTCAGACCCTTTACCATCAACCGCCCCGTCGCCGCCGTGGATA
CCAACATGCAGATGACCATCGCCCTTGCCATTGTGGTGTTCGAGCGAGTC
CCCGCCCGCCCCGCCGTCGACCATGCCGAGGTGTACTTCCTCCAGCAGGT
GGGCTCTAAGCCCTACTACACCCGCACCCTCTACGGTATTCTCTCCGTCA
CTGCCCTCCCCGTGCTCCTCCTCGGCATCATTCTCGCCGCCTGCGGCTAT
CTGGCGGCGGGCTATTCCCTCATTTTCATTCCCGTCGTCCTGTCAATGTG
GGCCTGGAACACGTGCGCTCATGTCCTCGCCGTCGCCCACCACCGCTACA
GCACCACGGGCAAGGATGATGTCCTCCTCCCCTCTGGTACGGTCGATCAG
GTCTACCTGCCCACCCCCTCCGCCCCATCCTCCCTCCCGCCCTCGGCCTC
GACCTCGAGTCGCCCGGGGGTGGTGGAGAAAGGGGAAAAGGAGGAGACAA
AGGTGGAAGAGGGAGGGTTTTCTACTGTACGGGTTTAAGGGAGGGAGGGG
GGTAGGGAGGGAGGGAGGAATT

protein sequence of NO18G02540.1

>NO18G02540.1-protein ID=NO18G02540.1-protein|Name=NO18G02540.1|organism=Nannochloropsis oceanica|type=polypeptide|length=395bp
MDQSVSLGGSAPEQKPDTGTTGINWAEKRARVSQTAKETAEYIKVHGKET
ASYIKTQSSAAAGAAVASTRETKEEVVREWVKSTGLGSLIYKSIMPAHWK
LPVISLGMTVLLLVVAIVILASFDSSAGGSLLILMLLPLTLLSQIVHNYC
DAALMLQVAQSKDSNGVTSLKKTAEGLNGNWEPILGLSIATWAESVYALT
TAIVRGVIFLSQLPFRLCLRPFTINRPVAAVDTNMQMTIALAIVVFERVP
ARPAVDHAEVYFLQQVGSKPYYTRTLYGILSVTALPVLLLGIILAACGYL
AAGYSLIFIPVVLSMWAWNTCAHVLAVAHHRYSTTGKDDVLLPSGTVDQV
YLPTPSAPSSLPPSASTSSRPGVVEKGEKEETKVEEGGFSTVRV*

mRNA from alignment at chr18:827126..830541-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO18G02540.1 ID=NO18G02540.1|Name=NO18G02540.1|organism=Nannochloropsis oceanica|type=mRNA|length=3416bp|location=Sequence derived from alignment at chr18:827126..830541- (Nannochloropsis oceanica)
TTGAAGTCATGTCGTGACAAATTGACGTTGCTCAGATGTGAGGTAAGATG
TGGCCCATGGGGCGCGCAGCAAGCTGCTGCTGCTTTCCGGCGAAGGAAAA
TAATCTACAACAGCGAACTCGGCTTCAGGTAGGAAACACCCAAATATCGG
CCCTGCATCCACACCATCAAGGTCAAGAACTTTGTTCTAAAGGTGCTGGA
AGGCTGAGTTGCAGGGCAATGGTGTGGCAGCGGTGAGAAGTGCAATACGA
TGTGCTCGGTGGATGATTTGCCGACCTCCCCACACATCACATTCCCTTAA
CACAGAACACAAACACACAGACATATAACACATCCCAACTTCCGACCGCC
AAGATGGACCAGAGCGTCTCTTTGGGTGGCTCTGCGCCGGTACGTTTACA
AAGGAAATTTCCATCCCCTTTTCCCTCCCTCCTCTTGATTCGGTCGGCCG
ACCCAAACGATAAATAATTGCCTTTGCCCATACCAAGATTACTTTTCCCT
CCGATTCCCCCAGGGGACATATGCCTTTTGCGTGTCCCCTCTTCCTTACA
TTCCCTTCCTTTCTCCCTTCCTCCCTTCTCGCCCTCTCCAGGAGCAAAAG
CCTGACACGGGCACCACGGGCATTAATTGGGCCGAAAAAAGGGCTAGGGT
TTCCCAGACCGCCAAGGAGACAGCAGAGTACATTAAGGTTTGTAGATAAA
GAATGAGATGAAGGGAGGGTGGAAGAGGTGGAGGGAAAGGTGGGGAAGGA
CCCTCGCCTGGTCGCAACATTCGTGCAATCCATTCGACCATCTTCCTCCT
TCCGCTCCCTCCCTCTCTCCCTCCCTCCCCTCCTTCCTCAGGTCCACGGC
AAGGAGACTGCAAGCTACATCAAGACGCAAAGTTCTGCCGCTGCGGGCGC
CGCTGTTGCCAGCACTCGAGAAACGAAGGAGGAGGTGGTGCGTGAGTGGG
TCAAGAGTACGGGCCTGGGTTCATTAATTTATAAAAGTATCATGCCGGCG
CATTGGAAGCTCCCTGTCATCTCGCTGGGGGTAAGGAGTGAGGGAGGAAG
GGAGTGAGGGAGGAAGGGAGTGAGGGAAGGAGGGAGGGAGGGAGGGGGTG
ATGCTGGAGTAGCTCACACCGACTTATGGCTGTTTTGCCACTCCTCCCTT
TCTCCCTCCCTCCTTCCCTACTTAACCTGCAGATGACAGTCCTTCTGCTG
GTTGTGGCCATCGTCATTCTTGCCTCCTTCGACTCCAGCGCTGGCGGCTC
TCTCCTCATTCTAATGCTGCTGCCTCTGACGCTACTCAGCCAGATCGTCC
ACAACTACTGCGACGGTATGCACACCCCTTCCTCCCACCCTCCCTCCCTC
CCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTACCCCCC
TCCCTCCTCCCTTCCTCCCTTTCTCTACAAATATAACGACGGGGAGGAAA
ACAAGGGGGAAGGGCTCCCCCCCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTGACCTTAGCTTCTGGGTGTTTCTCCGCCCGTTCGTCCCCTACCAAC
AGCCGCCCTGATGCTCCAAGTGGCTCAAAGCAAGGACAGCAACGGCGTGA
CCTCCCTCAAGAAGACAGCCGAGGGCCTCAACGGTACGTCCCCTCCCATC
CTCCCTCTCTCCCTCCCTCCCTCCCTCCTTCCTTCCCTCTTGACAACTCG
GAGCCCTTAATTCTCTCCCTCCCTCCCTCCCTCCCTCCCTCTCTCCCTCC
AGGCAATTGGGAGCCCATCCTAGGCCTCTCCATCGCCACATGGGCCGAGA
GCGTCTACGCCCTCACCACGGCTATCGTCCGCGGGTACGTCCTCCTTCCC
TCCCTCCATTCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCTTC
CCTTCCTTCCTCTCCCGTCCTCCCATCCTCCTTCTGTCTCCTCCTCCCCT
CGTCCCCTCCTCCCCCCCTTTTTTCGTTATGGCGGCGTCGCCACAACCTT
TCCGCCTGAGCCTTCACCTCCCTCCCTCCCTCCCTCCCTCCCTTCCTCCA
GCGTCATCTTCCTCTCCCAGCTTCCCTTCCGCCTGTGCCTCAGACCCTTT
ACCATCAACCGCCCCGTCGCCGCCGTGGATACCAACATGCAGGTATTCCC
TCCCTCCCTCCCTCCCTTCCCCCCCTCCCTTCGCTCTCGGCATACACACC
CTAATCCAATCCTCCTTCCCTCCCTCCCTCTCCAACTCCCAGATGACCAT
CGCCCTTGCCATTGTGGTGTTCGAGCGAGTCCCCGCCCGCCCCGCCGTCG
ACCATGCCGAGGTGTACTTCCTCCAGCAGGTGAGGAGGAGGGAGGGAGGG
AGGGAGGGAGGAAGTGAGGAAGGGAGAGGAGGCAGGACGCACCACGTCTG
AAAGGGGCTCGAGCTCAGTCAATTTCCTCCTTCCATAACCCCCTCCCCCC
CCCCTCCCTCCCTCCCTCCTTCCCTCCCTCTCCAATTTCTGCACTCTCAA
AAGCGTCCTCTCATCTCCTTTACTTCCTCCCTCCCTCCCTCCCTCCCTCC
CTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTTCCTTCCTCCCTCTTA
GGTGGGCTCTAAGCCCTACTACACCCGCACCCTCTACGGTATTCTCTCCG
TCACTGCCCTCCCCGTGCTCCTCCTCGGCATCATTCTCGCCGCCTGCGGC
TATCTGGCGGTACGTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCC
TCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTTCCACCCGTTACCCAGA
ATCTTGCTTCCATCTTCTCTCCTTCTCTCTCTCCCTCCCTCCCTCCCTCC
GTCCCTCCCTCACTTGCAGGCGGGCTATTCCCTCATTTTCATTCCCGTCG
TCCTGTCAATGTGGGCCTGGAACACGTGCGCTCATGGTAGGGAGGGAGGA
AGGGAGGAAGGGAGGGAGGGAGGAAGGGAGGGAGGAAGGGAGGGAGGAAG
GGAGGAGGGAAAGGAGGAAGGGAGGAAGGAAGGGAGGGAGAAAGGGAGGA
AGGGAGGAAGGGAGGGGTCCGGATGCTCTTTGCTTTGATAAAATCACTAT
CCTTCATTGATGCCCTGCCTCCTTTTCTAATCCCTCCCTCCCTCCCTCCC
TCCCTCCCTCCCTCCAGTCCTCGCCGTCGCCCACCACCGCTACAGCACCA
CGGGCAAGGATGATGTCCTCCTCCCCTCTGGTACGGTCGATCAGGTCTAC
CTGCCCACCCCCTCCGCCCCATCCTCCCTCCCGCCCTCGGCCTCGACCTC
GAGTCGCCCGGGGGTGGTGGAGAAAGGGGAAAAGGAGGAGACAAAGGTGG
AAGAGGGAGGGTTTTCTACTGTACGGGTTTAAGGGAGGGAGGGGGGTAGG
GAGGGAGGGAGGAATT

Coding sequence (CDS) from alignment at chr18:827126..830541-

>NO18G02540.1 ID=NO18G02540.1|Name=NO18G02540.1|organism=Nannochloropsis oceanica|type=CDS|length=1185bp|location=Sequence derived from alignment at chr18:827126..830541- (Nannochloropsis oceanica)
ATGGACCAGAGCGTCTCTTTGGGTGGCTCTGCGCCGGAGCAAAAGCCTGA
CACGGGCACCACGGGCATTAATTGGGCCGAAAAAAGGGCTAGGGTTTCCC
AGACCGCCAAGGAGACAGCAGAGTACATTAAGGTCCACGGCAAGGAGACT
GCAAGCTACATCAAGACGCAAAGTTCTGCCGCTGCGGGCGCCGCTGTTGC
CAGCACTCGAGAAACGAAGGAGGAGGTGGTGCGTGAGTGGGTCAAGAGTA
CGGGCCTGGGTTCATTAATTTATAAAAGTATCATGCCGGCGCATTGGAAG
CTCCCTGTCATCTCGCTGGGGATGACAGTCCTTCTGCTGGTTGTGGCCAT
CGTCATTCTTGCCTCCTTCGACTCCAGCGCTGGCGGCTCTCTCCTCATTC
TAATGCTGCTGCCTCTGACGCTACTCAGCCAGATCGTCCACAACTACTGC
GACGCCGCCCTGATGCTCCAAGTGGCTCAAAGCAAGGACAGCAACGGCGT
GACCTCCCTCAAGAAGACAGCCGAGGGCCTCAACGGCAATTGGGAGCCCA
TCCTAGGCCTCTCCATCGCCACATGGGCCGAGAGCGTCTACGCCCTCACC
ACGGCTATCGTCCGCGGCGTCATCTTCCTCTCCCAGCTTCCCTTCCGCCT
GTGCCTCAGACCCTTTACCATCAACCGCCCCGTCGCCGCCGTGGATACCA
ACATGCAGATGACCATCGCCCTTGCCATTGTGGTGTTCGAGCGAGTCCCC
GCCCGCCCCGCCGTCGACCATGCCGAGGTGTACTTCCTCCAGCAGGTGGG
CTCTAAGCCCTACTACACCCGCACCCTCTACGGTATTCTCTCCGTCACTG
CCCTCCCCGTGCTCCTCCTCGGCATCATTCTCGCCGCCTGCGGCTATCTG
GCGGCGGGCTATTCCCTCATTTTCATTCCCGTCGTCCTGTCAATGTGGGC
CTGGAACACGTGCGCTCATGTCCTCGCCGTCGCCCACCACCGCTACAGCA
CCACGGGCAAGGATGATGTCCTCCTCCCCTCTGGTACGGTCGATCAGGTC
TACCTGCCCACCCCCTCCGCCCCATCCTCCCTCCCGCCCTCGGCCTCGAC
CTCGAGTCGCCCGGGGGTGGTGGAGAAAGGGGAAAAGGAGGAGACAAAGG
TGGAAGAGGGAGGGTTTTCTACTGTACGGGTTTAA

Synonyms

Publications