NO18G02200.1, NO18G02200.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO18G02200.1
Unique NameNO18G02200.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1129
Alignment locationchr18:705839..707315 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr18genomechr18:705839..707315 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO18G02200.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO18G02200NO18G02200Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO18G02200.1NO18G02200.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO18G02200.1.cds1NO18G02200.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO18G02200.1.cds2NO18G02200.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO18G02200.1.cds3NO18G02200.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO18G02200.1 ID=NO18G02200.1|Name=NO18G02200.1|organism=Nannochloropsis oceanica|type=mRNA|length=1129bp
CACACAACGAAGATGCCAGCACAGCAATGTGTCTGTAGAAGTTTAAATAT
TTTCATTCTTTTGCAGAAAACTTTCATGAGTGTACTGTTCGTGGTAATGA
ATGAGAACTCACGGTCTCGAGCAGCGACCAGCAAAAACCAGCCACAAAGT
AAACGACGATCGTCTCTCGCGCTCTCGCTAATACCTTAAGACAGCATTGA
AGCGCGCGGTGCCTTTGAGCGGCATTCATGCTGGGCGGTCTGGTCTTGCC
ACGCGTCAATATTCATCATAGCGCGCTTGTTGATTCTTGGCGGTGTCGCC
GGCGGGGTGGCAGCAATTTTTGGCGTGGGCTTGGACACACAATGTTGTAA
GCTTCGGTTGTGTGAGGATTGCAACGTACTTGATATTCTTCGATGCCTTA
ATTCTTGTTTTGCTGACCTGCGCGTCGCAACTGCAACTAAGCAAGCACTG
TGGTCTGGTTTCGGCGATCATCCCCTGCAAGACATGTATGCGAGCATGTG
ACCAGTGTGATGGACAATTAAGATAAGGCATGGGATGGCAAGGGGACACG
AAGCTGCGACGACGAACGAGTTGCTTCTCCTTCTGCAAGCTTATTATTCG
CTGGGCGCTGCCTCTCCTTGTCATGCCGCAAGTCCACCCCTATGCTCCAG
AGGCATGCATCCACTTCTTTATTTCCTTGCCAACTAACCGTTGCGGACGC
TCAAAGACAAAGGATGCTCTGCTGGAGGGCCCCCAGTACCACTTACGTGC
CCTCGCTGCTGCTCTTGGTGCTCCTCTTGCTCTGCTGCTCCTATCGCGGC
CCACTGCCGCTGCAGGATGTTACAGCCCTGCCTTTCTTTTCAATGTGCCT
TTCTTGGCTTTGAAGGCGGCCGCGCTAATGTAGCGAGGCGGCAGAATGAA
AAGTAGGCGCCGTCCTTCACTTAGTCCTGCCTATATGTGAAGATTTGATG
GGTATCGATTGAGAGGACCGTGGGAAAGAGATGCTGATCAATTGAAATGG
AAATAAAACAAGCGAAGAGGCTAATTGTGACATCACGCCGCCTTGAGAAT
AGATGCAGAGCGTAGAGTTGGGGTGGCCCCTGGTGTCACACGTGGCAAGT
CAGGGCAAGGTATATCTAAGACATGGAAA
back to top

protein sequence of NO18G02200.1

>NO18G02200.1-protein ID=NO18G02200.1-protein|Name=NO18G02200.1|organism=Nannochloropsis oceanica|type=polypeptide|length=118bp
MGWQGDTKLRRRTSCFSFCKLIIRWALPLLVMPQVHPYAPEACIHFFISL
PTNRCGRSKTKDALLEGPQYHLRALAAALGAPLALLLLSRPTAAAGCYSP
AFLFNVPFLALKAAALM*
back to top

mRNA from alignment at chr18:705839..707315+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO18G02200.1 ID=NO18G02200.1|Name=NO18G02200.1|organism=Nannochloropsis oceanica|type=mRNA|length=1477bp|location=Sequence derived from alignment at chr18:705839..707315+ (Nannochloropsis oceanica)
CACACAACGAAGATGCCAGCACAGCAATGTGTCTGTAGAAGTTTAAATAT
TTTCATTCTTTTGCAGAAAACTTTCATGAGTGTACTGTTCGTGGTAATGA
ATGAGAACTCACGGTCTCGAGCAGCGACCAGCAAAAACCAGCCACAAAGT
AAACGACGATCGTCTCTCGCGCTCTCGCTAATACCTTAAGACAGCATTGA
AGCGCGCGGTGCCTTTGAGCGGCATTCATGCTGGGCGGTCTGGTCTTGCC
ACGCGTCAATATTCATCATAGCGCGCTTGTTGATTCTTGGCGGTGTCGCC
GGCGGGGTGGCAGCAATTTTTGGCGTGGGCTTGGACACACAATGTTGTAA
GCTTCGGTTGTGTGAGGATTGCAACGTACTTGATATTCTTCGATGCCTTA
ATTCTTGTTTTGCTGACCTGCGCGTCGCAACTGCAACTAAGCAAGCACTG
TGGTCTGGTTTCGGCGATCATCCCCTGCAAGACATGTATGCGAGCATGTG
ACCAGTGTGATGGACAATTAAGATAAGGCATGGGATGGCAAGGGGACACG
AAGCTGCGACGACGAACGAGTTGCTTCTCCTTCTGCAAGCTTATTATTCG
CTGGGCGCTGCCTCTCCTTGTCATGCCGCAAGTCCACCCCTATGCTCCAG
GTAAGGTAAAAATTTGTCTGGGAGGAAGATTGCGAATAGGAAGATAGAGT
GTCGGATGAGACGTTCCTCCTTGTCATCGTCTGACATATCCATGACTCGC
TCGCGGCACGTACCCACCCTCTCTCCACCCCTTCATCACAGAGGCATGCA
TCCACTTCTTTATTTCCTTGCCAACTAACCGTTGCGGACGCTCAAAGACA
AAGGATGCTCTGCTGGAGGGGTAGGTAGTCGACCAGGTGGGGATGGCGGA
AGACAACCTGTGTAGGATGGAGACAATATTGATGATGATGAGAAGGAGCA
GGGGACGCAGGATGTGCGGATGATGGGAAAAGATCTACTGCAGTGTTCCA
CAGCATCTCAGGGAGTTCATGTGGACATAATCACGTGATTTCGAAACCTT
TCTTCCATCCCTCCCTTCCTTTCACAGCCCCCAGTACCACTTACGTGCCC
TCGCTGCTGCTCTTGGTGCTCCTCTTGCTCTGCTGCTCCTATCGCGGCCC
ACTGCCGCTGCAGGATGTTACAGCCCTGCCTTTCTTTTCAATGTGCCTTT
CTTGGCTTTGAAGGCGGCCGCGCTAATGTAGCGAGGCGGCAGAATGAAAA
GTAGGCGCCGTCCTTCACTTAGTCCTGCCTATATGTGAAGATTTGATGGG
TATCGATTGAGAGGACCGTGGGAAAGAGATGCTGATCAATTGAAATGGAA
ATAAAACAAGCGAAGAGGCTAATTGTGACATCACGCCGCCTTGAGAATAG
ATGCAGAGCGTAGAGTTGGGGTGGCCCCTGGTGTCACACGTGGCAAGTCA
GGGCAAGGTATATCTAAGACATGGAAA
back to top

Coding sequence (CDS) from alignment at chr18:705839..707315+

>NO18G02200.1 ID=NO18G02200.1|Name=NO18G02200.1|organism=Nannochloropsis oceanica|type=CDS|length=354bp|location=Sequence derived from alignment at chr18:705839..707315+ (Nannochloropsis oceanica)
ATGGGATGGCAAGGGGACACGAAGCTGCGACGACGAACGAGTTGCTTCTC
CTTCTGCAAGCTTATTATTCGCTGGGCGCTGCCTCTCCTTGTCATGCCGC
AAGTCCACCCCTATGCTCCAGAGGCATGCATCCACTTCTTTATTTCCTTG
CCAACTAACCGTTGCGGACGCTCAAAGACAAAGGATGCTCTGCTGGAGGG
CCCCCAGTACCACTTACGTGCCCTCGCTGCTGCTCTTGGTGCTCCTCTTG
CTCTGCTGCTCCTATCGCGGCCCACTGCCGCTGCAGGATGTTACAGCCCT
GCCTTTCTTTTCAATGTGCCTTTCTTGGCTTTGAAGGCGGCCGCGCTAAT
GTAG
back to top
Synonyms
Publications