NO18G02050.1, NO18G02050.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO18G02050.1
Unique Name	NO18G02050.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2718
Alignment location	chr18:637281..640578 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr18	genome	chr18:637281..640578 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO18G02050.1 vs.
Match: EWM23416.1 (hypothetical protein Naga_100077g10 [Nannochloropsis gaditana])

HSP 1 Score: 384.4 bits (986), Expect = 2.200e-103
Identity = 174/210 (82.86%), Postives = 194/210 (92.38%), Query Frame = 0

Query:    1 MSGSMKPYKWFPGTSGWVHEVLNKLPVNMRTKLRSLALFRPDDINDLYPFPRNRISYPGVERIKGFRYPAPGSRGKVNVPQSESDDRLYDIKYFDHDTRRRPQEIYSWTPDFKRVAQAESPEPAKLMGSPGNKNPAVLAYDPTGLRSAMSATNQELQKALDKAMPDHQVQYAWQGDEEAIIKKCEVNGLPVPPGKRAKFNIPVMSLQKRW 211
            MSGSMKPYKWF GTSGW+HE+L KLP +M+TK+RS ALFRPDDINDLYPFPRNRISYPGVERIKG+RYPAPGSR KVNVPQSESDD+LYDIKYFDHDTRRRP E++SW+PDFKRVA  +SPEPAKLMGSPGNKNPAVLAYDPTGLRSAMSATNQEL+KALD+AMP+H V+YAWQG+EE I+K CE  GLPVPPGKRAKF +P M+ Q+RW
Sbjct:    1 MSGSMKPYKWFSGTSGWIHELLAKLPKDMQTKIRSWALFRPDDINDLYPFPRNRISYPGVERIKGYRYPAPGSRPKVNVPQSESDDKLYDIKYFDHDTRRRPAEVFSWSPDFKRVALPDSPEPAKLMGSPGNKNPAVLAYDPTGLRSAMSATNQELEKALDRAMPNHNVRYAWQGEEEQIVKDCEAKGLPVPPGKRAKFAVPAMATQRRW 210

The following BLAST results are available for this feature:

BLAST of NO18G02050.1 vs.

BLAST of NO18G02050.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM23416.1	2.200e-103	82.86	hypothetical protein Naga_100077g10 [Nannochlorops...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO18G02050	NO18G02050	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO18G02050.1	NO18G02050.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO18G02050.1.cds1	NO18G02050.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO18G02050.1.cds2	NO18G02050.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO18G02050.1.cds3	NO18G02050.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO18G02050.1.cds4	NO18G02050.1.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr18:637281..640578-
coding sequence from alignment at chr18:637281..640578-

mRNA sequence

>NO18G02050.1 ID=NO18G02050.1|Name=NO18G02050.1|organism=Nannochloropsis oceanica|type=mRNA|length=2718bp
ACAGCTGCACGATTTGGTTAAGCAAGAGCAGCAGCAGCCGGTGTTGAGCT
TGTACTGCATCCGCCACAAAGAGACGAGATAGATCGAGGAAGGAGGGCTT
ACTCCATTAGCAGCTAGCATTCAATACTAGGCATAATGAGCGGCAGCATG
AAGCCCTACAAATGGTTCCCTGGCACGTCAGGTTGGGTACACGAGGTCCT
GAACAAGCTCCCGGTGAACATGCGAACCAAGCTTCGTTCCTTGGCCCTGT
TCCGTCCCGACGACATCAACGATCTTTATCCCTTCCCTCGCAACCGTATC
TCCTACCCGGGCGTGGAGAGGATAAAGGGTTTCCGTTATCCGGCCCCCGG
GTCGAGGGGCAAGGTGAATGTGCCCCAGAGCGAGAGTGATGATAGGCTGT
ATGATATCAAGTACTTTGACCATGATACGCGCCGCCGGCCCCAAGAGATT
TACTCCTGGACACCCGATTTCAAGCGAGTGGCGCAGGCTGAGTCCCCGGA
GCCTGCCAAGCTGATGGGCAGTCCCGGGAATAAGAACCCTGCCGTCCTTG
CCTACGATCCTACAGGGCTGCGCAGCGCCATGAGCGCCACTAACCAAGAA
CTTCAGAAGGCCCTCGATAAAGCCATGCCCGATCACCAAGTACAGTATGC
ATGGCAAGGAGATGAGGAGGCGATCATTAAGAAGTGTGAGGTAAATGGCT
TGCCTGTCCCACCGGGGAAGCGGGCAAAGTTTAACATCCCAGTCATGTCG
TTGCAGAAGCGGTGGTAGAGGAAGGAAAGAAGGAAAGAATGGAGGAGGGA
GGCAAGGGAGGGGGGAAAGGGAGGAGGGGAAAAGAGGAATGAGAAGCTTG
TGTTGACATTGGCGGTGCCGTCTATGTTGAGGCAAGGCTTATAAAGGAAA
TGGATGGATGAATGGTGGGAAGGAGAAGGGGAGATTTTAGTGTGTGTTCA
GGTTTGGTTGGATTTAGATTTAAACGAGGAAATGAAATACTAGTACAGAA
GGTGGAAAGGAAGAAGAGGGGGAAGAAGGGAGGGGGACATAAGGAGAGTG
AGAGAAAATCAGTTTGAGGGAAAAGAAAGAGAGAACTGACTATATATGGG
AACAGGATAAAAGAAGGAAGAAAAAAAGGAAGATGAGGGTGAAGAAGGTG
AAGATGAAGGTGAAGATGGACAAATTCTTAGGAATTTCCCTGCGGCGCTT
CTTCCATATCATTTTCTTGCGCATAAGACTCATTTTTGATAAATTGGGTG
ACAACGCAAAAAAAAAAAGCCTAAAAATAATCAAAAGCAGCAGCAACAGC
AACAAAACAGCGTCCCTTTCTGTGAAAAATATTGTGGTTGAATCATTCTA
TTGCGTGACTAGCTCATTGTATACAAAGTCTTCTCTTTGTCTTCCGGGTC
GTCTTTCATCATTCCACTTGGTCATAAATTTGATTATTCTTATTCCGCTT
TACCTCCTCACCCTCATAATAGTCACCGCTTTCGTCCTTGTTTTTTATGT
TTGTGTTTGTCTGTAGGGGGTTTCCTTCCTCTTGCTATCATAACCCCTTT
ATATCCTTCCATAGCGACTGCTTCTTGCTTGATTTTAATTTATTTCCTTT
CCGGGGCACCACAGGAGCGCGTCTATCTCTATCTTCTTCTTCAACTATTT
CGGGCCATTCGATGCTTTCCTCTGCATCGTCGTCGTTGTCAATCAATTGT
CCTTCTGTTGGTCGAGTGGGAGGGGGGGTCATTTTGAATAACGCCTTTCA
TATCCAGGCTTCTGTCTTGTTTTCACTGTCATTCTTTCCCTTCCCTCCTC
CGTTCCTTCACTCCCTCTCTCTCCCTCTCTCCCTCTCTGTCTCTGTCTCT
CTCTGTCTCTCTCTGTCTCTCTCCTTCGTCTTCTTTTTAACAGACAGGCA
TCAGACAGATAAAACAGTCTAAATTTCCCTCTATCCCCCATCCCCGGCTG
AGGGGCTATGTTTTCTCCTACCTTCATCTCACCAAGCACTTTTTCCTCCC
TCTCTCTTCTCCCCCTGGTATAACATCTGTCATTTATTCCTCGAATCTAT
TAAATATTAGCGGTTAACTCTTCGACTGTCTCCCTTCCTCAATCTACTTC
ATGGGTTCAGATCACACGGCGCTCATATTCATCCCTTCCATCTCTCCTCA
CTTCAGCTTCAAATCATCATATGTGTCTTTCTCTCTCCCCCCCCCCCTAT
TTCCTTTGTCACACTAGAATACCGTTTTCCTCTTACCTTTCTTACATAAA
GATCAAGACAAAATACCAGGCTTTATCGCCACAACTCTCCCTCCGTCCCT
CCGTCTCTCCTTATCGGATCAAAGTCGGGCTTGTCTGCCATTCAAGCGTC
TTCGCTTCTAAGAGGCCCTCGGCGATCTCCACAGCTGCCGGATTGCCCTT
TATGTTCACCAGCCTCTCCGCTGTGGGTGGGCTTGCCTCCCTCGTGAACT
CCAAGCGTGCACCCGACTGCTTCTCGATCGCCGTGACATTGATCCCGCCT
TTTCCAATCAGAAAGCTGACAGCCTTGTTAGGCACATACACATGGACAAC
CGTGAAAACGCCCTTCCCTCCGTTCATGGCCGCAGCAGCAGCAGTCGCAG
CGGCGCTGCTTCCACCAAAGACGTTGCTCTCACCGTCTCTCGACCCTTCC
CTCTCTCTATTTTCCCTCTCTCGTTCCTTTTCCCTTTCCATAATCATCAT
CACATCTCCCGCGCCCCA

protein sequence of NO18G02050.1

>NO18G02050.1-protein ID=NO18G02050.1-protein|Name=NO18G02050.1|organism=Nannochloropsis oceanica|type=polypeptide|length=211bp
MSGSMKPYKWFPGTSGWVHEVLNKLPVNMRTKLRSLALFRPDDINDLYPF
PRNRISYPGVERIKGFRYPAPGSRGKVNVPQSESDDRLYDIKYFDHDTRR
RPQEIYSWTPDFKRVAQAESPEPAKLMGSPGNKNPAVLAYDPTGLRSAMS
ATNQELQKALDKAMPDHQVQYAWQGDEEAIIKKCEVNGLPVPPGKRAKFN
IPVMSLQKRW*

mRNA from alignment at chr18:637281..640578-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO18G02050.1 ID=NO18G02050.1|Name=NO18G02050.1|organism=Nannochloropsis oceanica|type=mRNA|length=3298bp|location=Sequence derived from alignment at chr18:637281..640578- (Nannochloropsis oceanica)
ACAGCTGCACGATTTGGTTAAGCAAGAGCAGCAGCAGCCGGTGTTGAGCT
TGTACTGCATCCGCCACAAAGAGACGAGATAGATCGAGGAAGGAGGGCTT
ACTCCATTAGCAGCTAGCATTCAATACTAGGCATAATGAGCGGCAGCATG
AAGCCCTACAAATGGTTCCCTGGCACGTCAGGTTGGGTACACGAGGTCCT
GAACAAGCTCCCGGTGAACATGCGAACCAAGGTAGGGAGTACAGGGAGTG
AGGGAGAGAGAAGTAGGGGAATTGATGATGACGCCAGTGGTGCTTGGCGG
CATGACGGCATTTATCAGCATTCACTTGCTATGCGCACCTTCTTCAAGGC
TCGCTACTCTTCGGGATTGTTCAGCTGTTTTATCCGGATATTTTCCCTCA
TTTCGTCGAAACTCCCACTCTCTCCCCTCCCTCCCTCGCAACCACAACAG
CTTCGTTCCTTGGCCCTGTTCCGTCCCGACGACATCAACGATCTTTATCC
CTTCCCTCGCAACCGTATCTCCTACCCGGGCGTGGAGAGGATAAAGGGTT
TCCGTTATCCGGCCCCCGGGTCGAGGGGCAAGGTGAATGTGCCCCAGAGC
GAGAGTGATGATAGGTACGGAAGAGGGATGGAGAGAAAGAGGGAGGAGGA
GGAAGAGACAGGCGGGAGGGCCGGATGAGATGTCGTCTCTTGTTCGGCAA
GCTGTCTCTGATTGCATGCAAGAATTTAAAACCTCTCTTACTCACGCGTG
TCGCGTTTGCATTCTTCTGCGTCCTTTTCGCTGATCGATTTCTCCCTCTC
CCTTTCTCTCCCTCTGCTCCCCCCCCCCTTTCCTCTTTTCCCTCCTCTTT
CCCCTCAAGGCTGTATGATATCAAGTACTTTGACCATGATACGCGCCGCC
GGCCCCAAGAGATTTACTCCTGGACACCCGATTTCAAGCGAGTGGCGCAG
GCTGAGTCCCCGGAGCCTGCCAAGCTGATGGGCAGGTAGGTGAAAAGGGA
GGGAGGGAGGGAAGGAGGGAGTGTCAGAATGTACGGCGGGCGAGATGATA
GACCACTCAACCCTCCCTCCGTTCCTCCCTTCTTCCCACCGCTCCCTCCA
GTCCCGGGAATAAGAACCCTGCCGTCCTTGCCTACGATCCTACAGGGCTG
CGCAGCGCCATGAGCGCCACTAACCAAGAACTTCAGAAGGCCCTCGATAA
AGCCATGCCCGATCACCAAGTACAGTATGCATGGCAAGGAGATGAGGAGG
CGATCATTAAGAAGTGTGAGGTAAATGGCTTGCCTGTCCCACCGGGGAAG
CGGGCAAAGTTTAACATCCCAGTCATGTCGTTGCAGAAGCGGTGGTAGAG
GAAGGAAAGAAGGAAAGAATGGAGGAGGGAGGCAAGGGAGGGGGGAAAGG
GAGGAGGGGAAAAGAGGAATGAGAAGCTTGTGTTGACATTGGCGGTGCCG
TCTATGTTGAGGCAAGGCTTATAAAGGAAATGGATGGATGAATGGTGGGA
AGGAGAAGGGGAGATTTTAGTGTGTGTTCAGGTTTGGTTGGATTTAGATT
TAAACGAGGAAATGAAATACTAGTACAGAAGGTGGAAAGGAAGAAGAGGG
GGAAGAAGGGAGGGGGACATAAGGAGAGTGAGAGAAAATCAGTTTGAGGG
AAAAGAAAGAGAGAACTGACTATATATGGGAACAGGATAAAAGAAGGAAG
AAAAAAAGGAAGATGAGGGTGAAGAAGGTGAAGATGAAGGTGAAGATGGA
CAAATTCTTAGGAATTTCCCTGCGGCGCTTCTTCCATATCATTTTCTTGC
GCATAAGACTCATTTTTGATAAATTGGGTGACAACGCAAAAAAAAAAAGC
CTAAAAATAATCAAAAGCAGCAGCAACAGCAACAAAACAGCGTCCCTTTC
TGTGAAAAATATTGTGGTTGAATCATTCTATTGCGTGACTAGCTCATTGT
ATACAAAGTCTTCTCTTTGTCTTCCGGGTCGTCTTTCATCATTCCACTTG
GTCATAAATTTGATTATTCTTATTCCGCTTTACCTCCTCACCCTCATAAT
AGTCACCGCTTTCGTCCTTGTTTTTTATGTTTGTGTTTGTCTGTAGGGGG
TTTCCTTCCTCTTGCTATCATAACCCCTTTATATCCTTCCATAGCGACTG
CTTCTTGCTTGATTTTAATTTATTTCCTTTCCGGGGCACCACAGGAGCGC
GTCTATCTCTATCTTCTTCTTCAACTATTTCGGGCCATTCGATGCTTTCC
TCTGCATCGTCGTCGTTGTCAATCAATTGTCCTTCTGTTGGTCGAGTGGG
AGGGGGGGTCATTTTGAATAACGCCTTTCATATCCAGGCTTCTGTCTTGT
TTTCACTGTCATTCTTTCCCTTCCCTCCTCCGTTCCTTCACTCCCTCTCT
CTCCCTCTCTCCCTCTCTGTCTCTGTCTCTCTCTGTCTCTCTCTGTCTCT
CTCCTTCGTCTTCTTTTTAACAGACAGGCATCAGACAGATAAAACAGTCT
AAATTTCCCTCTATCCCCCATCCCCGGCTGAGGGGCTATGTTTTCTCCTA
CCTTCATCTCACCAAGCACTTTTTCCTCCCTCTCTCTTCTCCCCCTGGTA
TAACATCTGTCATTTATTCCTCGAATCTATTAAATATTAGCGGTTAACTC
TTCGACTGTCTCCCTTCCTCAATCTACTTCATGGGTTCAGATCACACGGC
GCTCATATTCATCCCTTCCATCTCTCCTCACTTCAGCTTCAAATCATCAT
ATGTGTCTTTCTCTCTCCCCCCCCCCCTATTTCCTTTGTCACACTAGAAT
ACCGTTTTCCTCTTACCTTTCTTACATAAAGATCAAGACAAAATACCAGG
CTTTATCGCCACAACTCTCCCTCCGTCCCTCCGTCTCTCCTTATCGGATC
AAAGTCGGGCTTGTCTGCCATTCAAGCGTCTTCGCTTCTAAGAGGCCCTC
GGCGATCTCCACAGCTGCCGGATTGCCCTTTATGTTCACCAGCCTCTCCG
CTGTGGGTGGGCTTGCCTCCCTCGTGAACTCCAAGCGTGCACCCGACTGC
TTCTCGATCGCCGTGACATTGATCCCGCCTTTTCCAATCAGAAAGCTGAC
AGCCTTGTTAGGCACATACACATGGACAACCGTGAAAACGCCCTTCCCTC
CGTTCATGGCCGCAGCAGCAGCAGTCGCAGCGGCGCTGCTTCCACCAAAG
ACGTTGCTCTCACCGTCTCTCGACCCTTCCCTCTCTCTATTTTCCCTCTC
TCGTTCCTTTTCCCTTTCCATAATCATCATCACATCTCCCGCGCCCCA

Coding sequence (CDS) from alignment at chr18:637281..640578-

>NO18G02050.1 ID=NO18G02050.1|Name=NO18G02050.1|organism=Nannochloropsis oceanica|type=CDS|length=633bp|location=Sequence derived from alignment at chr18:637281..640578- (Nannochloropsis oceanica)
ATGAGCGGCAGCATGAAGCCCTACAAATGGTTCCCTGGCACGTCAGGTTG
GGTACACGAGGTCCTGAACAAGCTCCCGGTGAACATGCGAACCAAGCTTC
GTTCCTTGGCCCTGTTCCGTCCCGACGACATCAACGATCTTTATCCCTTC
CCTCGCAACCGTATCTCCTACCCGGGCGTGGAGAGGATAAAGGGTTTCCG
TTATCCGGCCCCCGGGTCGAGGGGCAAGGTGAATGTGCCCCAGAGCGAGA
GTGATGATAGGCTGTATGATATCAAGTACTTTGACCATGATACGCGCCGC
CGGCCCCAAGAGATTTACTCCTGGACACCCGATTTCAAGCGAGTGGCGCA
GGCTGAGTCCCCGGAGCCTGCCAAGCTGATGGGCAGTCCCGGGAATAAGA
ACCCTGCCGTCCTTGCCTACGATCCTACAGGGCTGCGCAGCGCCATGAGC
GCCACTAACCAAGAACTTCAGAAGGCCCTCGATAAAGCCATGCCCGATCA
CCAAGTACAGTATGCATGGCAAGGAGATGAGGAGGCGATCATTAAGAAGT
GTGAGGTAAATGGCTTGCCTGTCCCACCGGGGAAGCGGGCAAAGTTTAAC
ATCCCAGTCATGTCGTTGCAGAAGCGGTGGTAG

Synonyms

Publications