NO18G01960.1, NO18G01960.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO18G01960.1
Unique NameNO18G01960.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1775
Alignment locationchr18:601660..603795 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr18genomechr18:601660..603795 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO18G01960.1 vs.
Match: XP_005853391.1 (translationally controlled tumor protein [Nannochloropsis gaditana CCMP526]; EKU22968.1 translationally controlled tumor protein [Nannochloropsis gaditana CCMP526]; EWM23400.1 Translationally controlled tumor protein [Nannochloropsis gaditana])

HSP 1 Score: 331.3 bits (848), Expect = 1.900e-87
Identity = 164/180 (91.11%), Postives = 170/180 (94.44%), Query Frame = 0 
Query:    1 MIVYKDVISGDEVVSDALKITPVMEGGEEVPGLFEVDSAMVAVGGGDIDIGCGNAFGGAGDDEGADDATQKENNVSGPSSFAYTAMPFSSKGEFKSWVKDYVRNVRQALKGSGVAVEDIKKFMEEAPTFVKWLVDKYDDLEFFMSKSMNPDAGLIFSYYKEGAHCPTFVYVKSGYKVVKF 181
            MIVYKDVISGDEVVSDALKI PV E GE+VPGLFEVDSAMVAVGGGDIDIGCGNAFGGAG+DEGADD  QKENNVSG S F YTAMPFSSKGEFKSWVKDYVRNVRQALK +GVAVE+IKKFMEEAP FVKWLVDKYDDLEFFMSKSMNPDAGLIFSYYK+GAHCPTFVY+KSGYKVVKF
Sbjct:    1 MIVYKDVISGDEVVSDALKIEPVKENGEDVPGLFEVDSAMVAVGGGDIDIGCGNAFGGAGEDEGADDNVQKENNVSGSSGFNYTAMPFSSKGEFKSWVKDYVRNVRQALKANGVAVEEIKKFMEEAPGFVKWLVDKYDDLEFFMSKSMNPDAGLIFSYYKDGAHCPTFVYIKSGYKVVKF 180
The following BLAST results are available for this feature:
BLAST of NO18G01960.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005853391.11.900e-8791.11translationally controlled tumor protein [Nannochl... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO18G01960NO18G01960Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO18G01960.1NO18G01960.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO18G01960.1.cds1NO18G01960.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO18G01960.1.cds2NO18G01960.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO18G01960.1 ID=NO18G01960.1|Name=NO18G01960.1|organism=Nannochloropsis oceanica|type=mRNA|length=1775bp
CTTTCTTATCATCGGTTGCCTGCCTAGAAAATAGTTTCTTTGATATGCAG
GCAGTTTAGCTTCGTCTAGAAATTAGATGATTTCTTGACAACTTGTTGCA
GGTGGGATTGGCACGTGGTGGAAGACGGTGATGGAAGGGAAGGAGGTGAC
ACGGGGAATGCAGATTTTTTAAAAGGGGGTAATGAGGGAAACTATCATTA
ATTGATTACTTGATAATTCATCGATCTCACAGTTTTTTCTCGCAAAACAG
CCGAGAAAATCGCATCACTGTCTTTCGCAGGATCTAGTCGAGCCACACCC
ATCGCAACTTGAACGCTAGAAGAAATGTTATTTCGGGTAAAATGATTCTC
ATCCTTGTCCTTTATTGTGTCTATATACTTAGCGTCTGCCAACATCGACT
CCTCTTTCCGTCGCTTCTTTTGCCTTCCGCAAAAAATGCCACCATTTGCA
CGCATCAACCAAAATCCCTGCGGATCGAATTATGCGTTCCAGAGAACAAC
GCAAGCCAGCAACCGCTCATCTTGTATGTCGAGTAACTGTGTGTGCTTAT
CTGAAATACAGCCCACATTCCCGTGAATACTCTTAGCTGTGCTGCCCTCT
TGTCCTTTTTTAGCGAGCTCGGGAATGTGCGGCTGGGGACAGAGACCACA
CTGTTCGTCGCCGGTGTTGCAGCGAATGTGTGGCCATGCGGTTCCTCGCT
CAGAAGGGGCAGAGGAGAATCAACCCGCGCAAAACACAAACACGCGATGC
ATAACCGTGCACCGCACGCGTCACGACACACAGTAACTCATATTACTCTT
TTACTCTCTGTCACAGGCACAGTTTTCGTTCTCACGAAACCAAGCAACCA
TGATTGTGTACAAGGATGTTATCAGCGGCGACGAAGTGGTCTCGGACGCT
CTCAAGATCACGCCCGTGATGGAAGGCGGTGAGGAGGTGCCCGGCTTGTT
CGAAGTAGACTCTGCCATGGTGGCTGTCGGCGGTGGCGATATCGATATTG
GATGTGGCAATGCCTTCGGTGGTGCCGGTGATGACGAAGGCGCTGACGAC
GCAACCCAGAAGGAGAATAACGTGTCGGGCCCCAGCAGCTTTGCCTATAC
CGCCATGCCCTTTTCCAGTAAGGGAGAGTTCAAAAGTTGGGTGAAGGATT
ATGTGCGCAATGTGCGCCAGGCGTTGAAGGGCAGTGGGGTGGCGGTTGAG
GACATCAAGAAATTCATGGAGGAGGCCCCTACTTTTGTGAAGTGGCTAGT
AGACAAGTATGACGACTTGGAGTTCTTTATGAGCAAGTCTATGAATCCGG
ATGCGGGGCTGATTTTCTCCTATTACAAGGAAGGGGCGCATTGCCCGACG
TTCGTATACGTGAAGAGTGGGTACAAGGTGGTCAAGTTTTAAATTAAAGC
AAGGATGGTAGAAAGGGGAGTGTTGAAGGGGTGGGGGATGACTTTTTTGT
TGAAGATAGGAGAGAAGCAGCAAGGGTAGGAGAAAGAGGTGAAGACCAGC
AACAAAATAAGGAGCGTGAGTGACAGGGCACGGGCGGGTGGAAAGAAGCA
TTGAAGCACAGCACCAACAACCACCAAAGAAGAACGGGCAGTGAGAGTTG
GCCATTATAAGCGCTAATCTTCAAGAGAAAATGGTGTCTTTGTGTTGTGT
GCTTGTGGTGCCAACTTCACCGCCGTGGTGCTGCTGGACTCGCTCTTTGT
GAAAACAAGAGAGGAGAAGGAGTGAAGCGGGTGGGGCGACTGCAAACAAG
TAAGAAAGCTTGAGTCTCTAAAATT
back to top

protein sequence of NO18G01960.1

>NO18G01960.1-protein ID=NO18G01960.1-protein|Name=NO18G01960.1|organism=Nannochloropsis oceanica|type=polypeptide|length=181bp
MIVYKDVISGDEVVSDALKITPVMEGGEEVPGLFEVDSAMVAVGGGDIDI
GCGNAFGGAGDDEGADDATQKENNVSGPSSFAYTAMPFSSKGEFKSWVKD
YVRNVRQALKGSGVAVEDIKKFMEEAPTFVKWLVDKYDDLEFFMSKSMNP
DAGLIFSYYKEGAHCPTFVYVKSGYKVVKF*
back to top

mRNA from alignment at chr18:601660..603795+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO18G01960.1 ID=NO18G01960.1|Name=NO18G01960.1|organism=Nannochloropsis oceanica|type=mRNA|length=2136bp|location=Sequence derived from alignment at chr18:601660..603795+ (Nannochloropsis oceanica)
CTTTCTTATCATCGGTTGCCTGCCTAGAAAATAGTTTCTTTGATATGCAG
GCAGTTTAGCTTCGTCTAGAAATTAGATGATTTCTTGACAACTTGTTGCA
GGTGGGATTGGCACGTGGTGGAAGACGGTGATGGAAGGGAAGGAGGTGAC
ACGGGGAATGCAGATTTTTTAAAAGGGGGTAATGAGGGAAACTATCATTA
ATTGATTACTTGATAATTCATCGATCTCACAGTTTTTTCTCGCAAAACAG
CCGAGAAAATCGCATCACTGTCTTTCGCAGGATCTAGTCGAGCCACACCC
ATCGCAACTTGAACGCTAGAAGAAATGTTATTTCGGGTAAAATGATTCTC
ATCCTTGTCCTTTATTGTGTCTATATACTTAGCGTCTGCCAACATCGACT
CCTCTTTCCGTCGCTTCTTTTGCCTTCCGCAAAAAATGCCACCATTTGCA
CGCATCAACCAAAATCCCTGCGGATCGAATTATGCGTTCCAGAGAACAAC
GCAAGCCAGCAACCGCTCATCTTGTATGTCGAGTAACTGTGTGTGCTTAT
CTGAAATACAGCCCACATTCCCGTGAATACTCTTAGCTGTGCTGCCCTCT
TGTCCTTTTTTAGCGAGCTCGGGAATGTGCGGCTGGGGACAGAGACCACA
CTGTTCGTCGCCGGTGTTGCAGCGAATGTGTGGCCATGCGGTTCCTCGCT
CAGAAGGGGCAGAGGAGAATCAACCCGCGCAAAACACAAACACGCGATGC
ATAACCGTGCACCGCACGCGTCACGACACACAGTAACTCATATTACTCTT
TTACTCTCTGTCACAGGCACAGTTTTCGTTCTCACGAAACCAAGCAACCA
TGATTGTGTACAAGGATGTTATCAGCGGCGACGAAGTGGTGAGTGCGTGC
CTCTCCTCACTCCCATTCATATGCCTCAATTGCATATCTGTCTGTTTGAG
TCCCTCGTTTACTCGCTTTGCGATTATTGCTTTATGGTGGAAAGGTTTGG
TGTGTGGTTGGTGGGTGGGACAGAAGGGGTAGGAGACAGGCACATATCTG
GGGGGAATGTAATTATGGTGGGAGCGACGCCTCGTATAATCCAGTCCATC
CTCGCTGTCCTTCGCCAAGCGTCCGTGGGTAAAGCATTCATCCTTTCTTC
CTCTGACTTGTGCATTTTTCTTACTCTCTTTCAAACCGTGCGCTCCCGTT
TATTTCATCCCTACCCTTCTTCTCTCCCTCCCCTCGCCCTCCCCTCCAGG
TCTCGGACGCTCTCAAGATCACGCCCGTGATGGAAGGCGGTGAGGAGGTG
CCCGGCTTGTTCGAAGTAGACTCTGCCATGGTGGCTGTCGGCGGTGGCGA
TATCGATATTGGATGTGGCAATGCCTTCGGTGGTGCCGGTGATGACGAAG
GCGCTGACGACGCAACCCAGAAGGAGAATAACGTGTCGGGCCCCAGCAGC
TTTGCCTATACCGCCATGCCCTTTTCCAGTAAGGGAGAGTTCAAAAGTTG
GGTGAAGGATTATGTGCGCAATGTGCGCCAGGCGTTGAAGGGCAGTGGGG
TGGCGGTTGAGGACATCAAGAAATTCATGGAGGAGGCCCCTACTTTTGTG
AAGTGGCTAGTAGACAAGTATGACGACTTGGAGTTCTTTATGAGCAAGTC
TATGAATCCGGATGCGGGGCTGATTTTCTCCTATTACAAGGAAGGGGCGC
ATTGCCCGACGTTCGTATACGTGAAGAGTGGGTACAAGGTGGTCAAGTTT
TAAATTAAAGCAAGGATGGTAGAAAGGGGAGTGTTGAAGGGGTGGGGGAT
GACTTTTTTGTTGAAGATAGGAGAGAAGCAGCAAGGGTAGGAGAAAGAGG
TGAAGACCAGCAACAAAATAAGGAGCGTGAGTGACAGGGCACGGGCGGGT
GGAAAGAAGCATTGAAGCACAGCACCAACAACCACCAAAGAAGAACGGGC
AGTGAGAGTTGGCCATTATAAGCGCTAATCTTCAAGAGAAAATGGTGTCT
TTGTGTTGTGTGCTTGTGGTGCCAACTTCACCGCCGTGGTGCTGCTGGAC
TCGCTCTTTGTGAAAACAAGAGAGGAGAAGGAGTGAAGCGGGTGGGGCGA
CTGCAAACAAGTAAGAAAGCTTGAGTCTCTAAAATT
back to top

Coding sequence (CDS) from alignment at chr18:601660..603795+

>NO18G01960.1 ID=NO18G01960.1|Name=NO18G01960.1|organism=Nannochloropsis oceanica|type=CDS|length=543bp|location=Sequence derived from alignment at chr18:601660..603795+ (Nannochloropsis oceanica)
ATGATTGTGTACAAGGATGTTATCAGCGGCGACGAAGTGGTCTCGGACGC
TCTCAAGATCACGCCCGTGATGGAAGGCGGTGAGGAGGTGCCCGGCTTGT
TCGAAGTAGACTCTGCCATGGTGGCTGTCGGCGGTGGCGATATCGATATT
GGATGTGGCAATGCCTTCGGTGGTGCCGGTGATGACGAAGGCGCTGACGA
CGCAACCCAGAAGGAGAATAACGTGTCGGGCCCCAGCAGCTTTGCCTATA
CCGCCATGCCCTTTTCCAGTAAGGGAGAGTTCAAAAGTTGGGTGAAGGAT
TATGTGCGCAATGTGCGCCAGGCGTTGAAGGGCAGTGGGGTGGCGGTTGA
GGACATCAAGAAATTCATGGAGGAGGCCCCTACTTTTGTGAAGTGGCTAG
TAGACAAGTATGACGACTTGGAGTTCTTTATGAGCAAGTCTATGAATCCG
GATGCGGGGCTGATTTTCTCCTATTACAAGGAAGGGGCGCATTGCCCGAC
GTTCGTATACGTGAAGAGTGGGTACAAGGTGGTCAAGTTTTAA
back to top
Synonyms
Publications