NO18G01850.1, NO18G01850.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO18G01850.1
Unique NameNO18G01850.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1718
Alignment locationchr18:570938..573333 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr18genomechr18:570938..573333 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO18G01850.1 vs.
Match: EWM23387.1 (Vacuolar protein sorting-associated protein 26 [Nannochloropsis gaditana])

HSP 1 Score: 543.5 bits (1399), Expect = 4.100e-151
Identity = 268/301 (89.04%), Postives = 287/301 (95.35%), Query Frame = 0 
Query:    1 MSLFGSLVSGPQARVNIKLTGVDSRLKKEMSSGKGTTHLLPIYQTHEGVSGTMEIVLAPGKKLEHLGIKIELVGAIEMLNDRTSTYEFTSLVKELETAGVLYSDKQYSFDFATVDKPYDSYTGLNVRLRYFLKVTVTRQYAPNILAEQELVVQSTAEPPPSQSSIKMEVGIEDCLHIEFEYDKQKYHLKDVILGKIYFLLVRIKIKHMELAIIRRESAGTGSNVTNESETLCKFEVMDGAPVKGECIPLRLFLSSIDLTPTYRSVNNRFSVRYYLNLVLVDEEDRRYFKQQEVVFYNKDLG 302
            MSLFG+LV GPQARVNIKLTG+D R+KKEMSSG+GTTHLLP+YQ HEGV G +E++LAPGKKLEHLGIKIELVGAIEML DR S +EFT+LVKEL+TAGVL+SDKQY+FDFATVDKPYDSYTGLNVRLRYFLKVTVTRQYAPN++AEQELVVQST + P S SSIKMEVGIEDCLHIEFEYDKQKYHLKDVILGKIYFLLVRIKIKHMELAIIRRESAGTG+NV NESETLCKFEVMDGAPVKGECIPLRLFLSSI LTPTYRSVNNRFSVRYYLNLVLVDEEDRRYFKQQEV+FYNK+LG
Sbjct:    1 MSLFGNLVGGPQARVNIKLTGIDQRMKKEMSSGRGTTHLLPLYQAHEGVGGIVEVILAPGKKLEHLGIKIELVGAIEMLQDRGSVHEFTNLVKELDTAGVLFSDKQYTFDFATVDKPYDSYTGLNVRLRYFLKVTVTRQYAPNLVAEQELVVQSTTQVPESHSSIKMEVGIEDCLHIEFEYDKQKYHLKDVILGKIYFLLVRIKIKHMELAIIRRESAGTGANVMNESETLCKFEVMDGAPVKGECIPLRLFLSSIALTPTYRSVNNRFSVRYYLNLVLVDEEDRRYFKQQEVIFYNKELG 301
The following BLAST results are available for this feature:
BLAST of NO18G01850.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23387.14.100e-15189.04Vacuolar protein sorting-associated protein 26 [Na... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO18G01850NO18G01850Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO18G01850.1NO18G01850.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO18G01850.1.cds1NO18G01850.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO18G01850.1.cds2NO18G01850.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO18G01850.1.cds3NO18G01850.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO18G01850.1.cds4NO18G01850.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO18G01850.1.cds5NO18G01850.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO18G01850.1 ID=NO18G01850.1|Name=NO18G01850.1|organism=Nannochloropsis oceanica|type=mRNA|length=1718bp
CTAGACATGCTTTCGGGCTGTCTGGGGCGGGTGTATTGGGAGGGGATGAC
CGAGTGAGGAAATAAAAATATCATGGAGCCGGGGAAAGCAGGCGTCATCA
AGTCTGTGTTGCTTCCATGCGGCATATTTACATTTACCACGCCACAAACC
GTCCAAACATGCATTATGTGGGGCACATGTATACCGCGCTGTGCATTTTT
ACCTCTTGCAGTACGGGATTGTGGTCATCACTCGTTTGTAATGGACATCA
GATCCCAGGGTGCTGTCGCATTAGCGAGAGAGGTTTTTCTTCCTTCCTTT
CTTCCTTTATTCCCATCTGCCGCACTAACCACGTCTCTTTTTCTACACCA
CCACCAGCAAAAGATAGCAGCAGCGGCAGCAGCAGCAACAACAAAACAAC
AATAACAGCAACAGTAATAGGTGCTGGAGCCCGTGAAGCTGCGGCATTTC
TTCCCTTGCTGTAGGTTGGGGCGGCTAGAGCTAGCGGGAGGCAGGCGCAT
ACCAACGACAGACGTAGCACCATGTCCCTCTTCGGCAGCCTCGTCAGCGG
GCCCCAAGCTAGGGTCAACATTAAACTCACCGGCGTCGATTCGCGCTTGA
AAAAAGAAATGAGCAGCGGCAAAGGTACCACGCACCTCCTCCCTATCTAT
CAGACCCACGAGGGTGTGAGTGGAACGATGGAAATTGTTTTAGCACCGGG
AAAGAAATTGGAGCACCTGGGAATCAAGATTGAGTTAGTGGGGGCGATCG
AGATGTTGAATGATCGCACGTCTACCTACGAGTTCACCAGCCTGGTAAAA
GAGCTCGAAACGGCCGGTGTCCTCTATTCGGACAAGCAATACTCGTTCGA
CTTCGCCACTGTCGACAAGCCCTACGACTCATACACTGGCCTCAACGTCC
GCCTGCGTTACTTTTTGAAAGTGACGGTGACACGACAGTACGCCCCCAAT
ATATTGGCAGAACAAGAGCTCGTCGTGCAATCCACCGCGGAGCCCCCCCC
TTCTCAGTCCAGTATCAAGATGGAGGTGGGTATCGAAGACTGCCTGCACA
TCGAGTTTGAGTACGACAAACAAAAGTACCACCTCAAAGATGTCATTCTT
GGCAAAATTTATTTCCTCCTCGTCCGAATTAAAATCAAGCACATGGAGCT
GGCCATCATTCGCCGGGAAAGTGCCGGGACGGGCTCGAATGTAACGAACG
AAAGTGAGACGTTGTGTAAATTCGAGGTGATGGACGGTGCGCCCGTGAAG
GGGGAGTGTATTCCCCTACGGTTGTTTTTGTCGTCCATTGACTTGACCCC
CACATATCGAAGCGTGAACAACCGTTTTTCGGTCCGATATTACTTGAATT
TGGTGTTGGTAGATGAGGAGGATCGCCGGTACTTCAAGCAGCAGGAGGTG
GTATTTTACAATAAGGACCTCGGGTAGTGGAGTGCGTAGTAGGACGTGGA
TCGACCTTTCTTATCCTCCTTTCCCTCCCCCGCTGTAGGTTATTCTTATT
TCGATCAGTGGTAAATGATAGAAGGAATGATTATATTGCTCCTTCGACGA
ATGAGGCGAGAATGCGGGGGGAAGAGAGGGAGAGAGAGGGAGGAGGAAGC
AGGTAGTTTGTTGATATTAGGGTGAGAAGGACGACGCCAAAGAGGAGGGA
AGAACATATGAGCAGCTTTACCAGCAGCAGCGGCAATAACAAAGCAAAAA
GGACACTGGAAACCGTTT
back to top

protein sequence of NO18G01850.1

>NO18G01850.1-protein ID=NO18G01850.1-protein|Name=NO18G01850.1|organism=Nannochloropsis oceanica|type=polypeptide|length=302bp
MSLFGSLVSGPQARVNIKLTGVDSRLKKEMSSGKGTTHLLPIYQTHEGVS
GTMEIVLAPGKKLEHLGIKIELVGAIEMLNDRTSTYEFTSLVKELETAGV
LYSDKQYSFDFATVDKPYDSYTGLNVRLRYFLKVTVTRQYAPNILAEQEL
VVQSTAEPPPSQSSIKMEVGIEDCLHIEFEYDKQKYHLKDVILGKIYFLL
VRIKIKHMELAIIRRESAGTGSNVTNESETLCKFEVMDGAPVKGECIPLR
LFLSSIDLTPTYRSVNNRFSVRYYLNLVLVDEEDRRYFKQQEVVFYNKDL
G*
back to top

mRNA from alignment at chr18:570938..573333+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO18G01850.1 ID=NO18G01850.1|Name=NO18G01850.1|organism=Nannochloropsis oceanica|type=mRNA|length=2396bp|location=Sequence derived from alignment at chr18:570938..573333+ (Nannochloropsis oceanica)
CTAGACATGCTTTCGGGCTGTCTGGGGCGGGTGTATTGGGAGGGGATGAC
CGAGTGAGGAAATAAAAATATCATGGAGCCGGGGAAAGCAGGCGTCATCA
AGTCTGTGTTGCTTCCATGCGGCATATTTACATTTACCACGCCACAAACC
GTCCAAACATGCATTATGTGGGGCACATGTATACCGCGCTGTGCATTTTT
ACCTCTTGCAGTACGGGATTGTGGTCATCACTCGTTTGTAATGGACATCA
GATCCCAGGGTGCTGTCGCATTAGCGAGAGAGGTTTTTCTTCCTTCCTTT
CTTCCTTTATTCCCATCTGCCGCACTAACCACGTCTCTTTTTCTACACCA
CCACCAGCAAAAGATAGCAGCAGCGGCAGCAGCAGCAACAACAAAACAAC
AATAACAGCAACAGTAATAGGTGCTGGAGCCCGTGAAGCTGCGGCATTTC
TTCCCTTGCTGTAGGTTGGGGCGGCTAGAGCTAGCGGGAGGCAGGCGCAT
ACCAACGACAGACGTAGCACCATGGTAAGTCCGTCGATACTCTTGTCCTT
CACAGTATTTTAAGTCGTGCACATTGAACATATAAAGATATCCTAGGCAC
GTCCCGGTGCCCTGACTTTTGGCACGTTGTTAGACACCAAAATGGTCCCT
CAGTCTCTCATCATCAGTCCAGGCCCGACCATCATAACCCCTCCTTTCCC
TCCCCCCCCCGGCCCGCGCTTCTTTCCTTCTCCTTCTATCCACTCCCTCC
CCTCTCTCTTGTCCTCCCTAGTCCCTCTTCGGCAGCCTCGTCAGCGGGCC
CCAAGCTAGGGTCAACATTAAACTCACCGGCGTCGATTCGCGCTTGAAAA
AAGAAATGAGCAGCGGCAAAGGTACCACGCACCTCCTCCCTATCTATCAG
ACCCACGAGGGTGTGAGTGGAACGATGGAAATTGTTTTAGCACCGGGAAA
GAAATTGGAGCACCTGGGAATCAAGATTGAGTTAGTGGGGGCGATCGAGG
TAAGGAGGGAGGTAGGGAGGGAGGGAAGAAGAGAGGAAAGCGTGCTTGAA
GATAATTTGTGATTCAGGACTGACCATCCATCGCTCCTTCCCCCAGATGT
TGAATGATCGCACGTCTACCTACGAGTTCACCAGCCTGGTAAAAGAGCTC
GAAACGGCCGGTGTCCTCTATTCGGACAAGCAATACTCGTTCGACTTCGC
CACTGTCGACAAGCCCTACGACTCATACACTGGCCTCAACGTCCGCCTGC
GTTACTTTTTGAAAGTGACGGTGACACGACAGTACGCCCCCAATATATTG
GCAGAACAAGAGCTCGTCGTGCAATCCACCGCGGAGCCCCCCCCTTCTCA
GTCCAGTATCAAGATGGAGGTACGTTTCCTTCTTTTCCTGCTTCCATCCC
TTCCTTCCTTACTCCAACCTGTCGTGCGTCACAATCGCTCTTCATGGAAT
GGTTTATAAGCTGTCTTATTGATTTCTGTGTGTGGACTTGTTTCTGGCTA
TGTTCGTCGACCCACCCTTCCCTCCTTCCCTCCTTCGCACCCCTCCAGGT
GGGTATCGAAGACTGCCTGCACATCGAGTTTGAGTACGACAAACAAAAGT
ACCACCTCAAAGATGTCATTCTTGGTACGCATCTTCCTCCCTCACTCTCT
TCCCGCTTCCTCCTCTCCCTCTGTGTCCCCCAGGCCACTGGTCTCTTGTC
CTTTTTGGACGTTCTCACCGAACTTGGGTCCACCCTCCCTCTCTCCCTCC
CTTCTTCCATTCCCTCCGCCCTCACTTAGGCAAAATTTATTTCCTCCTCG
TCCGAATTAAAATCAAGCACATGGAGCTGGCCATCATTCGCCGGGAAAGT
GCCGGGACGGGCTCGAATGTAACGAACGAAAGTGAGACGTTGTGTAAATT
CGAGGTGATGGACGGTGCGCCCGTGAAGGGGGAGTGTATTCCCCTACGGT
TGTTTTTGTCGTCCATTGACTTGACCCCCACATATCGAAGCGTGAACAAC
CGTTTTTCGGTCCGATATTACTTGAATTTGGTGTTGGTAGATGAGGAGGA
TCGCCGGTACTTCAAGCAGCAGGAGGTGGTATTTTACAATAAGGACCTCG
GGTAGTGGAGTGCGTAGTAGGACGTGGATCGACCTTTCTTATCCTCCTTT
CCCTCCCCCGCTGTAGGTTATTCTTATTTCGATCAGTGGTAAATGATAGA
AGGAATGATTATATTGCTCCTTCGACGAATGAGGCGAGAATGCGGGGGGA
AGAGAGGGAGAGAGAGGGAGGAGGAAGCAGGTAGTTTGTTGATATTAGGG
TGAGAAGGACGACGCCAAAGAGGAGGGAAGAACATATGAGCAGCTTTACC
AGCAGCAGCGGCAATAACAAAGCAAAAAGGACACTGGAAACCGTTT
back to top

Coding sequence (CDS) from alignment at chr18:570938..573333+

>NO18G01850.1 ID=NO18G01850.1|Name=NO18G01850.1|organism=Nannochloropsis oceanica|type=CDS|length=906bp|location=Sequence derived from alignment at chr18:570938..573333+ (Nannochloropsis oceanica)
ATGTCCCTCTTCGGCAGCCTCGTCAGCGGGCCCCAAGCTAGGGTCAACAT
TAAACTCACCGGCGTCGATTCGCGCTTGAAAAAAGAAATGAGCAGCGGCA
AAGGTACCACGCACCTCCTCCCTATCTATCAGACCCACGAGGGTGTGAGT
GGAACGATGGAAATTGTTTTAGCACCGGGAAAGAAATTGGAGCACCTGGG
AATCAAGATTGAGTTAGTGGGGGCGATCGAGATGTTGAATGATCGCACGT
CTACCTACGAGTTCACCAGCCTGGTAAAAGAGCTCGAAACGGCCGGTGTC
CTCTATTCGGACAAGCAATACTCGTTCGACTTCGCCACTGTCGACAAGCC
CTACGACTCATACACTGGCCTCAACGTCCGCCTGCGTTACTTTTTGAAAG
TGACGGTGACACGACAGTACGCCCCCAATATATTGGCAGAACAAGAGCTC
GTCGTGCAATCCACCGCGGAGCCCCCCCCTTCTCAGTCCAGTATCAAGAT
GGAGGTGGGTATCGAAGACTGCCTGCACATCGAGTTTGAGTACGACAAAC
AAAAGTACCACCTCAAAGATGTCATTCTTGGCAAAATTTATTTCCTCCTC
GTCCGAATTAAAATCAAGCACATGGAGCTGGCCATCATTCGCCGGGAAAG
TGCCGGGACGGGCTCGAATGTAACGAACGAAAGTGAGACGTTGTGTAAAT
TCGAGGTGATGGACGGTGCGCCCGTGAAGGGGGAGTGTATTCCCCTACGG
TTGTTTTTGTCGTCCATTGACTTGACCCCCACATATCGAAGCGTGAACAA
CCGTTTTTCGGTCCGATATTACTTGAATTTGGTGTTGGTAGATGAGGAGG
ATCGCCGGTACTTCAAGCAGCAGGAGGTGGTATTTTACAATAAGGACCTC
GGGTAG
back to top
Synonyms
Publications