NO18G01810.1, NO18G01810.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO18G01810.1
Unique NameNO18G01810.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length513
Alignment locationchr18:563163..563860 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr18genomechr18:563163..563860 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO18G01810.1 vs.
Match: EWM23396.1 (Membrane associated eicosanoid/glutathione metabolism-like domain protein [Nannochloropsis gaditana])

HSP 1 Score: 240.7 bits (613), Expect = 3.200e-60
Identity = 118/157 (75.16%), Postives = 139/157 (88.54%), Query Frame = 0 
Query:   14 TLHGSSALLTTLVSCTALLYFKHVWTLTVQGGAAIQSGNRIDEDYNRLGLTRPSAVSEADQQNDKRWRRIVANDLENIPIGLIVLWSAAMATSAKGSDGGVGVIVLTILFTISRFAYTYCFVTALQPWRTVAWTAGVLCVVVAACLGVVVAFIAQFD 171
            T++G S LL+TLV+CT LLY KHVWTLT+QGGAAI+SGNRIDEDY++LGL RP  VS+ D+Q D RWRRIVANDLENIP+GLIVLWSAA+A+SAK S+GG+GVIVLTI+FT++RFAYT C+V ALQPWRTVAWT GVL VV A  LG+VVAFIAQF+
Sbjct:    8 TIYGGSMLLSTLVTCTGLLYLKHVWTLTMQGGAAIKSGNRIDEDYSKLGLNRPLEVSDVDRQQDARWRRIVANDLENIPLGLIVLWSAALASSAKESEGGIGVIVLTIVFTVARFAYTACYVFALQPWRTVAWTLGVLSVVAAVFLGIVVAFIAQFE 164
The following BLAST results are available for this feature:
BLAST of NO18G01810.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23396.13.200e-6075.16Membrane associated eicosanoid/glutathione metabol... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO18G01810NO18G01810Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO18G01810.1NO18G01810.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO18G01810.1.cds1NO18G01810.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO18G01810.1.cds2NO18G01810.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO18G01810.1 ID=NO18G01810.1|Name=NO18G01810.1|organism=Nannochloropsis oceanica|type=mRNA|length=513bp
ATGGACCCCGATTTCCTTTTCCCCAAAAACAGCACCAAGACACTTCACGG
CTCCTCCGCGCTACTGACTACCCTCGTGAGCTGTACGGCCCTTCTCTATT
TTAAGCATGTCTGGACTCTCACTGTGCAGGGTGGAGCCGCAATCCAATCC
GGAAACCGCATCGACGAGGACTACAACAGGCTAGGCCTCACCCGCCCCTC
GGCCGTGTCAGAAGCGGACCAACAAAATGACAAGCGTTGGCGTCGCATCG
TTGCCAATGATTTGGAGAATATTCCGATTGGTTTAATCGTGCTGTGGTCG
GCGGCAATGGCTACGAGTGCCAAGGGTTCGGATGGAGGGGTCGGGGTGAT
AGTACTCACAATCCTATTTACCATCTCGAGGTTTGCGTACACATATTGTT
TTGTAACGGCGTTGCAGCCGTGGAGAACGGTGGCATGGACGGCGGGGGTG
CTGTGTGTGGTGGTGGCGGCCTGCTTGGGGGTGGTGGTTGCCTTTATTGC
ACAGTTTGACTGA
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protein sequence of NO18G01810.1

>NO18G01810.1-protein ID=NO18G01810.1-protein|Name=NO18G01810.1|organism=Nannochloropsis oceanica|type=polypeptide|length=171bp
MDPDFLFPKNSTKTLHGSSALLTTLVSCTALLYFKHVWTLTVQGGAAIQS
GNRIDEDYNRLGLTRPSAVSEADQQNDKRWRRIVANDLENIPIGLIVLWS
AAMATSAKGSDGGVGVIVLTILFTISRFAYTYCFVTALQPWRTVAWTAGV
LCVVVAACLGVVVAFIAQFD*
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mRNA from alignment at chr18:563163..563860-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO18G01810.1 ID=NO18G01810.1|Name=NO18G01810.1|organism=Nannochloropsis oceanica|type=mRNA|length=698bp|location=Sequence derived from alignment at chr18:563163..563860- (Nannochloropsis oceanica)
ATGGACCCCGATTTCCTTTTCCCCAAAAACAGCACCAAGACACTTCACGG
CTCCTCCGCGCTACTGACTACCCTCGTGAGCTGTACGGCCCTTCTCTATT
TTAAGCATGTCTGGACTCTCACTGTGCAGGTATGGCTGAGTCACTGCTTG
TTTGCCTTGGTCGAGGAGGATACGCATATGTCCCGATCGTCTTTTTCATG
TTTCCCCCCAGTTCGAGACGTACCGTGTCGCTGAATGATATTCGAGTAAT
GCCTTACCTAGGGCAACTCTTTCAACTTACCTACTCTCCCCTCTCTTTCC
CCTTCAACCACTAGGGTGGAGCCGCAATCCAATCCGGAAACCGCATCGAC
GAGGACTACAACAGGCTAGGCCTCACCCGCCCCTCGGCCGTGTCAGAAGC
GGACCAACAAAATGACAAGCGTTGGCGTCGCATCGTTGCCAATGATTTGG
AGAATATTCCGATTGGTTTAATCGTGCTGTGGTCGGCGGCAATGGCTACG
AGTGCCAAGGGTTCGGATGGAGGGGTCGGGGTGATAGTACTCACAATCCT
ATTTACCATCTCGAGGTTTGCGTACACATATTGTTTTGTAACGGCGTTGC
AGCCGTGGAGAACGGTGGCATGGACGGCGGGGGTGCTGTGTGTGGTGGTG
GCGGCCTGCTTGGGGGTGGTGGTTGCCTTTATTGCACAGTTTGACTGA
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Coding sequence (CDS) from alignment at chr18:563163..563860-

>NO18G01810.1 ID=NO18G01810.1|Name=NO18G01810.1|organism=Nannochloropsis oceanica|type=CDS|length=513bp|location=Sequence derived from alignment at chr18:563163..563860- (Nannochloropsis oceanica)
ATGGACCCCGATTTCCTTTTCCCCAAAAACAGCACCAAGACACTTCACGG
CTCCTCCGCGCTACTGACTACCCTCGTGAGCTGTACGGCCCTTCTCTATT
TTAAGCATGTCTGGACTCTCACTGTGCAGGGTGGAGCCGCAATCCAATCC
GGAAACCGCATCGACGAGGACTACAACAGGCTAGGCCTCACCCGCCCCTC
GGCCGTGTCAGAAGCGGACCAACAAAATGACAAGCGTTGGCGTCGCATCG
TTGCCAATGATTTGGAGAATATTCCGATTGGTTTAATCGTGCTGTGGTCG
GCGGCAATGGCTACGAGTGCCAAGGGTTCGGATGGAGGGGTCGGGGTGAT
AGTACTCACAATCCTATTTACCATCTCGAGGTTTGCGTACACATATTGTT
TTGTAACGGCGTTGCAGCCGTGGAGAACGGTGGCATGGACGGCGGGGGTG
CTGTGTGTGGTGGTGGCGGCCTGCTTGGGGGTGGTGGTTGCCTTTATTGC
ACAGTTTGACTGA
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Synonyms
Publications