NO18G01690.1, NO18G01690.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO18G01690.1
Unique NameNO18G01690.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1404
Alignment locationchr18:538904..540526 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr18genomechr18:538904..540526 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO18G01690.1 vs.
Match: EWM23372.1 (hypothetical protein Naga_100057g33 [Nannochloropsis gaditana])

HSP 1 Score: 80.1 bits (196), Expect = 1.200e-11
Identity = 100/307 (32.57%), Postives = 147/307 (47.88%), Query Frame = 0 
Query:   12 CSLLLLCLTCTPETVRADQGM--DMMD-FEVPSGDDMMDA------EASNEVFFLLSEKVAALTTAEATVLSL--------------EEQLKASSE---ELADKAERLSA--------------SENEISELSEQVKELSSKL---------LKGETAATVAATKGEMAALTSELEQAQEEVRELSEKVKTLEATVAESEWQAEKAEDEKQILRKDLAEMTEGKRAAETSLDGAKDVAGLAFDRVKYLEGQVAKAKSDAVTARKTWEEELRLKDKEVVETKAKLQDAIDNKYSFRVLSEDLSAWSKK 270
            CS+ LLCL   P  V  D  +  D+ D  E    D ++D+      +  +++  LL+EK AAL+  E+++ SL              EE+++  SE   EL  KAE  S               +  EI  L E+V +L +KL         L+ E  A  AA + E  +  + +   ++E++E S  +K LEA  A++      AE EK      +   TE K AAE            A  R++ LE ++ KA S+A TAR++ EE+L+ K KEV +TKAKL+  +  KYSFR LS D  AW  K
Sbjct:   18 CSIFLLCLVDVPIGVLGDDVVANDIQDTHETEKADFIIDSGYETPLDKKSDMLNLLNEKNAALSALESSINSLQDELKDKVERLATAEEEIRKLSEKVTELNSKAEEASLHISQLERERTETRDAAAEILRLKEKVDDLEAKLTEATKERGNLEQEKEAQKAAWEEEKQSFQARVTVLEDEMKENSSSLKNLEAEYAQNLI----AEKEKT---DSMTSQTE-KEAAE------------AAKRIQSLEAELIKAHSEAATARQSLEEQLKTKQKEVTDTKAKLRRTVKTKYSFRTLSSDFVAWFNK 304
The following BLAST results are available for this feature:
BLAST of NO18G01690.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23372.11.200e-1132.57hypothetical protein Naga_100057g33 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO18G01690NO18G01690Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO18G01690.1NO18G01690.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO18G01690.1.cds1NO18G01690.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO18G01690.1.cds2NO18G01690.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO18G01690.1 ID=NO18G01690.1|Name=NO18G01690.1|organism=Nannochloropsis oceanica|type=mRNA|length=1404bp
CTGCAGTCACGGTATCTTCAGTTTCCTACCTTTGGCTAGCAGTGTGCTGC
ATGGGCGGGTTGCTGGTGATTAATTCGAAAGGGATTGCTAAACACACCCG
ACTTACTACACCATCACGCCAACAGGCGGCAATAAATGATCATATAATTT
TAATGAGGAGGCATACCGTTGCCCACGAGCCACCAGACCACACATGCCTA
CACTCAACCTTTTCCCTCTACGCTCCCTTTCCGTTCAGGCACTGGCAGCC
CTCACGCTCCCATAAACGAGCCAGCAATGAAAATCACATCCACCACTTTT
GTCGCGGGCTGCTCCCTCCTCCTCCTCTGTCTAACTTGCACCCCTGAAAC
CGTGCGCGCGGACCAGGGCATGGACATGATGGACTTTGAGGTTCCTTCGG
GTGATGACATGATGGACGCGGAGGCGTCTAACGAGGTCTTCTTTCTCTTG
TCCGAGAAAGTTGCTGCCTTGACCACTGCGGAGGCCACCGTTCTCTCCCT
CGAAGAGCAGCTCAAGGCCTCCTCCGAAGAGCTAGCGGACAAGGCCGAGC
GCTTGTCCGCCTCGGAGAATGAAATCTCAGAACTATCAGAGCAAGTAAAA
GAACTATCTTCCAAGCTGCTCAAGGGAGAGACCGCTGCGACCGTTGCAGC
TACGAAGGGGGAAATGGCTGCCCTGACCAGCGAGCTGGAGCAGGCCCAGG
AGGAGGTGAGGGAACTCAGCGAGAAGGTCAAGACCTTGGAAGCAACCGTG
GCTGAGAGTGAATGGCAGGCAGAGAAGGCGGAGGACGAGAAGCAGATCCT
GCGGAAGGACCTGGCAGAAATGACTGAAGGGAAAAGAGCAGCAGAGACGA
GTTTGGATGGGGCGAAGGACGTGGCCGGATTGGCATTCGATCGCGTCAAA
TATCTGGAAGGGCAGGTTGCGAAGGCAAAGAGTGATGCAGTGACCGCCCG
GAAGACGTGGGAGGAAGAATTGAGGTTGAAGGACAAAGAGGTGGTGGAGA
CCAAGGCAAAGCTTCAAGATGCTATTGACAACAAATATTCATTCCGTGTC
CTGTCGGAGGACTTGTCCGCCTGGTCGAAGAAGGCACGGGCGGTGATGAA
GATCTGGTGAGAGTTCAGCGACAGATGGGTGGGGCTTGGGTGTAGGTCTG
CAAAAAATTTCTTGAATGATTTGGACCTGTCTTTATATAAAAGTGAGTGC
GTAGGCAGTGGGAAGAAAAGTTACAGTTGAATGCAGACTCAAGAAAGAGG
ACAGCAGCAGTCAACCGGAGATTGTGAAGGGAAAGTTGGAGAGGAAATTC
GAAGAAATAGCTTTGGGGAACCTTTCATGATACTGCAACTTTCGACAGTT
CATGGGATTCATATACTTATTACTCAAAGAAACAAAAATGCCTCACTTTG
ACGA
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protein sequence of NO18G01690.1

>NO18G01690.1-protein ID=NO18G01690.1-protein|Name=NO18G01690.1|organism=Nannochloropsis oceanica|type=polypeptide|length=278bp
MKITSTTFVAGCSLLLLCLTCTPETVRADQGMDMMDFEVPSGDDMMDAEA
SNEVFFLLSEKVAALTTAEATVLSLEEQLKASSEELADKAERLSASENEI
SELSEQVKELSSKLLKGETAATVAATKGEMAALTSELEQAQEEVRELSEK
VKTLEATVAESEWQAEKAEDEKQILRKDLAEMTEGKRAAETSLDGAKDVA
GLAFDRVKYLEGQVAKAKSDAVTARKTWEEELRLKDKEVVETKAKLQDAI
DNKYSFRVLSEDLSAWSKKARAVMKIW*
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mRNA from alignment at chr18:538904..540526-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO18G01690.1 ID=NO18G01690.1|Name=NO18G01690.1|organism=Nannochloropsis oceanica|type=mRNA|length=1623bp|location=Sequence derived from alignment at chr18:538904..540526- (Nannochloropsis oceanica)
CTGCAGTCACGGTATCTTCAGTTTCCTACCTTTGGCTAGCAGTGTGCTGC
ATGGGCGGGTTGCTGGTGATTAATTCGAAAGGGATTGCTAAACACACCCG
ACTTACTACACCATCACGCCAACAGGCGGCAATAAATGATCATATAATTT
TAATGAGGAGGCATACCGTTGCCCACGAGCCACCAGACCACACATGCCTA
CACTCAACCTTTTCCCTCTACGCTCCCTTTCCGTTCAGGCACTGGCAGCC
CTCACGCTCCCATAAACGAGCCAGCAATGAAAATCACATCCACCACTTTT
GTCGCGGGCTGCTCCCTCCTCCTCCTCTGTCTAACTTGCACCCCTGAAAC
CGTGCGCGCGGACCAGGGCATGGACATGATGGACTTTGAGGTTCCTTCGG
GTGATGACATGATGGACGCGGAGGCGTCTAACGAGGTCTTCTTTCTCTTG
TCCGAGAAAGTTGGTACGTATTTCTTTATTCAATGTCCCGTGCCTGAACG
TTGTCCTCCCATCTCGTCTCTCTATCTTGCCATTTCTCTTCTCTATCCTC
TCAGATCATGCTGTCTGCCCTCTTTTGCCTTTTCCCCACTCCCTTGCTTC
CCTGCTGTTTCCTTGCCAAATCGCATCCCACATTTGACCAGCTATTTCTC
ATCGCTTCCCATCCAACGCACACACAATAAAGCTGCCTTGACCACTGCGG
AGGCCACCGTTCTCTCCCTCGAAGAGCAGCTCAAGGCCTCCTCCGAAGAG
CTAGCGGACAAGGCCGAGCGCTTGTCCGCCTCGGAGAATGAAATCTCAGA
ACTATCAGAGCAAGTAAAAGAACTATCTTCCAAGCTGCTCAAGGGAGAGA
CCGCTGCGACCGTTGCAGCTACGAAGGGGGAAATGGCTGCCCTGACCAGC
GAGCTGGAGCAGGCCCAGGAGGAGGTGAGGGAACTCAGCGAGAAGGTCAA
GACCTTGGAAGCAACCGTGGCTGAGAGTGAATGGCAGGCAGAGAAGGCGG
AGGACGAGAAGCAGATCCTGCGGAAGGACCTGGCAGAAATGACTGAAGGG
AAAAGAGCAGCAGAGACGAGTTTGGATGGGGCGAAGGACGTGGCCGGATT
GGCATTCGATCGCGTCAAATATCTGGAAGGGCAGGTTGCGAAGGCAAAGA
GTGATGCAGTGACCGCCCGGAAGACGTGGGAGGAAGAATTGAGGTTGAAG
GACAAAGAGGTGGTGGAGACCAAGGCAAAGCTTCAAGATGCTATTGACAA
CAAATATTCATTCCGTGTCCTGTCGGAGGACTTGTCCGCCTGGTCGAAGA
AGGCACGGGCGGTGATGAAGATCTGGTGAGAGTTCAGCGACAGATGGGTG
GGGCTTGGGTGTAGGTCTGCAAAAAATTTCTTGAATGATTTGGACCTGTC
TTTATATAAAAGTGAGTGCGTAGGCAGTGGGAAGAAAAGTTACAGTTGAA
TGCAGACTCAAGAAAGAGGACAGCAGCAGTCAACCGGAGATTGTGAAGGG
AAAGTTGGAGAGGAAATTCGAAGAAATAGCTTTGGGGAACCTTTCATGAT
ACTGCAACTTTCGACAGTTCATGGGATTCATATACTTATTACTCAAAGAA
ACAAAAATGCCTCACTTTGACGA
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Coding sequence (CDS) from alignment at chr18:538904..540526-

>NO18G01690.1 ID=NO18G01690.1|Name=NO18G01690.1|organism=Nannochloropsis oceanica|type=CDS|length=834bp|location=Sequence derived from alignment at chr18:538904..540526- (Nannochloropsis oceanica)
ATGAAAATCACATCCACCACTTTTGTCGCGGGCTGCTCCCTCCTCCTCCT
CTGTCTAACTTGCACCCCTGAAACCGTGCGCGCGGACCAGGGCATGGACA
TGATGGACTTTGAGGTTCCTTCGGGTGATGACATGATGGACGCGGAGGCG
TCTAACGAGGTCTTCTTTCTCTTGTCCGAGAAAGTTGCTGCCTTGACCAC
TGCGGAGGCCACCGTTCTCTCCCTCGAAGAGCAGCTCAAGGCCTCCTCCG
AAGAGCTAGCGGACAAGGCCGAGCGCTTGTCCGCCTCGGAGAATGAAATC
TCAGAACTATCAGAGCAAGTAAAAGAACTATCTTCCAAGCTGCTCAAGGG
AGAGACCGCTGCGACCGTTGCAGCTACGAAGGGGGAAATGGCTGCCCTGA
CCAGCGAGCTGGAGCAGGCCCAGGAGGAGGTGAGGGAACTCAGCGAGAAG
GTCAAGACCTTGGAAGCAACCGTGGCTGAGAGTGAATGGCAGGCAGAGAA
GGCGGAGGACGAGAAGCAGATCCTGCGGAAGGACCTGGCAGAAATGACTG
AAGGGAAAAGAGCAGCAGAGACGAGTTTGGATGGGGCGAAGGACGTGGCC
GGATTGGCATTCGATCGCGTCAAATATCTGGAAGGGCAGGTTGCGAAGGC
AAAGAGTGATGCAGTGACCGCCCGGAAGACGTGGGAGGAAGAATTGAGGT
TGAAGGACAAAGAGGTGGTGGAGACCAAGGCAAAGCTTCAAGATGCTATT
GACAACAAATATTCATTCCGTGTCCTGTCGGAGGACTTGTCCGCCTGGTC
GAAGAAGGCACGGGCGGTGATGAAGATCTGGTGA
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Synonyms
Publications