NO18G01490.1, NO18G01490.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO18G01490.1
Unique NameNO18G01490.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length579
Alignment locationchr18:490600..491178 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr18genomechr18:490600..491178 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO18G01490.1 vs.
Match: EWM23361.1 (dynamin switch motor protein [Nannochloropsis gaditana])

HSP 1 Score: 208.8 bits (530), Expect = 1.500e-50
Identity = 104/109 (95.41%), Postives = 109/109 (100.00%), Query Frame = 0 
Query:   84 MRYGDGPNDREKIETEIIKALTASYFDVVRKNFMDLVPKTIMYFLVNHAKDNLQNELVSNLYREDLIGESMRETADVAMRRKNSQEMRVLLQKALEIVNEVRDFNTFKL 193
            MRYGDGPNDREKIETEIIKALTASYFDVVRKNFMD+VPKTIMYFLVNHAKDNLQNELVSNLYR+DLIGESMRETADVAMRRKN+QEM++LLQKALEIVNEVRDFNTFKL
Sbjct:    1 MRYGDGPNDREKIETEIIKALTASYFDVVRKNFMDMVPKTIMYFLVNHAKDNLQNELVSNLYRDDLIGESMRETADVAMRRKNAQEMKLLLQKALEIVNEVRDFNTFKL 109
The following BLAST results are available for this feature:
BLAST of NO18G01490.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23361.11.500e-5095.41dynamin switch motor protein [Nannochloropsis gadi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO18G01490NO18G01490Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO18G01490.1NO18G01490.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO18G01490.1.cds1NO18G01490.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO18G01490.1 ID=NO18G01490.1|Name=NO18G01490.1|organism=Nannochloropsis oceanica|type=mRNA|length=579bp
ATGAACAGCAGCAGCAGCGTTGGGATGGGCAGTAGCAGTGTCGCGAGTGG
CGTGGCAGCGGCCACGAGTGGTGGAGACAAGGGGGGAGGGATCATGTCGT
ACATTTTTGGGGCTCGGGCGCAGGGAGGGAATGGAGGAGCCGGGGGGGGG
TTGGGAGGAAGTGGGCGATTCGGAGGAGTAGGAGCGAGAGATGGGGGGAG
GGAGGGAGGGAGGGAGGCGGTGGTGAAGTTGCCGCAGGTCCCGGAGGTGA
TGAGGTATGGTGATGGGCCGAATGATCGGGAGAAGATTGAGACGGAGATT
ATCAAGGCCTTGACGGCGAGTTATTTTGATGTGGTCCGGAAGAATTTCAT
GGATTTGGTGCCTAAGACCATAATGTATTTCTTGGTGAACCATGCGAAGG
ATAATTTACAGAATGAGTTGGTTTCGAATTTGTACCGGGAGGATTTGATC
GGGGAGAGCATGCGAGAAACGGCGGACGTAGCGATGAGGCGCAAGAATTC
TCAGGAGATGCGGGTTTTGCTGCAGAAGGCCTTGGAGATTGTTAATGAGG
TCAGGGACTTCAATACATTTAAGCTATAA
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protein sequence of NO18G01490.1

>NO18G01490.1-protein ID=NO18G01490.1-protein|Name=NO18G01490.1|organism=Nannochloropsis oceanica|type=polypeptide|length=193bp
MNSSSSVGMGSSSVASGVAAATSGGDKGGGIMSYIFGARAQGGNGGAGGG
LGGSGRFGGVGARDGGREGGREAVVKLPQVPEVMRYGDGPNDREKIETEI
IKALTASYFDVVRKNFMDLVPKTIMYFLVNHAKDNLQNELVSNLYREDLI
GESMRETADVAMRRKNSQEMRVLLQKALEIVNEVRDFNTFKL*
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mRNA from alignment at chr18:490600..491178+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO18G01490.1 ID=NO18G01490.1|Name=NO18G01490.1|organism=Nannochloropsis oceanica|type=mRNA|length=579bp|location=Sequence derived from alignment at chr18:490600..491178+ (Nannochloropsis oceanica)
ATGAACAGCAGCAGCAGCGTTGGGATGGGCAGTAGCAGTGTCGCGAGTGG
CGTGGCAGCGGCCACGAGTGGTGGAGACAAGGGGGGAGGGATCATGTCGT
ACATTTTTGGGGCTCGGGCGCAGGGAGGGAATGGAGGAGCCGGGGGGGGG
TTGGGAGGAAGTGGGCGATTCGGAGGAGTAGGAGCGAGAGATGGGGGGAG
GGAGGGAGGGAGGGAGGCGGTGGTGAAGTTGCCGCAGGTCCCGGAGGTGA
TGAGGTATGGTGATGGGCCGAATGATCGGGAGAAGATTGAGACGGAGATT
ATCAAGGCCTTGACGGCGAGTTATTTTGATGTGGTCCGGAAGAATTTCAT
GGATTTGGTGCCTAAGACCATAATGTATTTCTTGGTGAACCATGCGAAGG
ATAATTTACAGAATGAGTTGGTTTCGAATTTGTACCGGGAGGATTTGATC
GGGGAGAGCATGCGAGAAACGGCGGACGTAGCGATGAGGCGCAAGAATTC
TCAGGAGATGCGGGTTTTGCTGCAGAAGGCCTTGGAGATTGTTAATGAGG
TCAGGGACTTCAATACATTTAAGCTATAA
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Coding sequence (CDS) from alignment at chr18:490600..491178+

>NO18G01490.1 ID=NO18G01490.1|Name=NO18G01490.1|organism=Nannochloropsis oceanica|type=CDS|length=579bp|location=Sequence derived from alignment at chr18:490600..491178+ (Nannochloropsis oceanica)
ATGAACAGCAGCAGCAGCGTTGGGATGGGCAGTAGCAGTGTCGCGAGTGG
CGTGGCAGCGGCCACGAGTGGTGGAGACAAGGGGGGAGGGATCATGTCGT
ACATTTTTGGGGCTCGGGCGCAGGGAGGGAATGGAGGAGCCGGGGGGGGG
TTGGGAGGAAGTGGGCGATTCGGAGGAGTAGGAGCGAGAGATGGGGGGAG
GGAGGGAGGGAGGGAGGCGGTGGTGAAGTTGCCGCAGGTCCCGGAGGTGA
TGAGGTATGGTGATGGGCCGAATGATCGGGAGAAGATTGAGACGGAGATT
ATCAAGGCCTTGACGGCGAGTTATTTTGATGTGGTCCGGAAGAATTTCAT
GGATTTGGTGCCTAAGACCATAATGTATTTCTTGGTGAACCATGCGAAGG
ATAATTTACAGAATGAGTTGGTTTCGAATTTGTACCGGGAGGATTTGATC
GGGGAGAGCATGCGAGAAACGGCGGACGTAGCGATGAGGCGCAAGAATTC
TCAGGAGATGCGGGTTTTGCTGCAGAAGGCCTTGGAGATTGTTAATGAGG
TCAGGGACTTCAATACATTTAAGCTATAA
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Synonyms
Publications