NO18G01370.1, NO18G01370.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO18G01370.1
Unique NameNO18G01370.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1095
Alignment locationchr18:462271..463365 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr18genomechr18:462271..463365 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO18G01370.1 vs.
Match: EWM23374.1 (l-iditol 2-dehydrogenase [Nannochloropsis gaditana])

HSP 1 Score: 545.4 bits (1404), Expect = 1.300e-151
Identity = 269/353 (76.20%), Postives = 304/353 (86.12%), Query Frame = 0 
Query:   13 NPAIFLNGIDCMTIGHYALP-PLGAQDVRIAVKAVGICASDVHYLRKGRIADFIVKEPMVIGHESAGEVVAVGEAITALAVGDRVAMEPGISCQRCKPCKTGAYNLCPDMKFFATPPVHGSLAHFVHHPADLCFPLPSPLSYEDGAMCEPLAVGVYACIKANIRPGMRVLITGAGPIGLVTLLSARAFGASEIIITDVDERRLAIAAATAPGVKAVCVAGKITAEVLVMIGGPASVDVTMDCAGFETTVEVALEATTNGGKVLLIGMGCSTRTMHVPLLSAAVREVDLLGSFRYRNVYPTCLSLIESGRIDVRKLITHRVDLSGEGRFTAELVKEGFALSEKGGDVVKVMFNL 365
            NPA +L  I+ + + +Y LP PLG  DVRIA+KAVGICASDVHYLR+GRIADFIVKEPMVIGHESAGEVVAVG+ +T L VGDRVA+EPGI+CQRC  CKTGAYNLCPDM+FFATPPVHGSLA FV HPA+LCFPLP+ +SYE+GAMCEP AVGVYAC KA +RPG+R+LITGAGPIGLVTLL+ARAFGAS+IIITDVD RRLAIAA  APG + V V GK   EVL M+GG   VDVTMDCAGFE TVE+ALEAT NGGKVLLIGMGCSTR MH+PLL AA+REVDLLGSFRYRNVYP CL++I SG++D+++LITH  DLSG G FTAE V  GFALSE+GG+VVKVMF L
Sbjct:   47 NPAAYLLSINKIAVKNYELPSPLGEYDVRIAIKAVGICASDVHYLRRGRIADFIVKEPMVIGHESAGEVVAVGKKVTNLVVGDRVAIEPGIACQRCPQCKTGAYNLCPDMRFFATPPVHGSLARFVQHPANLCFPLPASISYEEGAMCEPFAVGVYACTKAKVRPGIRLLITGAGPIGLVTLLAARAFGASDIIITDVDRRRLAIAAEIAPGTRTVLVEGKAPTEVLHMVGGCGCVDVTMDCAGFEGTVELALEATANGGKVLLIGMGCSTRRMHIPLLPAAIREVDLLGSFRYRNVYPACLAMIASGKVDLKRLITHYKDLSGPGSFTAESVTSGFALSEQGGEVVKVMFTL 399
The following BLAST results are available for this feature:
BLAST of NO18G01370.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23374.11.300e-15176.20l-iditol 2-dehydrogenase [Nannochloropsis gaditana... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO18G01370NO18G01370Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO18G01370.1NO18G01370.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO18G01370.1.cds1NO18G01370.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO18G01370.1 ID=NO18G01370.1|Name=NO18G01370.1|organism=Nannochloropsis oceanica|type=mRNA|length=1095bp
ATGTCGCCCGACAGTCCACCACCACCGCCGCTCAACAATCCGGCCATCTT
TCTCAATGGCATCGACTGCATGACCATCGGACATTACGCCCTCCCGCCCC
TGGGGGCTCAAGACGTGCGCATCGCAGTTAAAGCCGTGGGTATATGTGCC
TCGGACGTACATTACTTGCGCAAAGGCCGCATTGCTGACTTCATCGTCAA
AGAACCCATGGTGATAGGCCACGAGAGCGCGGGAGAGGTGGTAGCCGTGG
GGGAGGCCATCACAGCTCTCGCCGTAGGAGATCGCGTGGCAATGGAACCA
GGCATATCCTGCCAGCGATGCAAGCCATGTAAAACCGGAGCTTATAATTT
ATGTCCGGACATGAAGTTCTTTGCGACCCCTCCCGTGCATGGTTCCCTCG
CGCACTTTGTCCACCACCCTGCGGACCTTTGCTTCCCCTTGCCCAGCCCC
TTATCCTATGAAGATGGTGCCATGTGTGAGCCACTTGCCGTGGGTGTGTA
TGCCTGCATCAAGGCCAATATTCGACCAGGGATGCGTGTACTCATCACAG
GGGCGGGACCCATTGGCTTGGTCACTCTTTTGAGCGCCCGTGCATTTGGG
GCCTCAGAGATAATAATTACAGATGTGGATGAACGACGACTTGCTATTGC
TGCTGCTACCGCACCAGGGGTGAAAGCCGTGTGCGTGGCAGGGAAGATCA
CAGCTGAAGTGCTAGTAATGATCGGAGGGCCAGCCTCTGTGGATGTCACG
ATGGACTGCGCAGGTTTTGAGACCACTGTGGAGGTCGCATTGGAGGCAAC
GACCAACGGAGGAAAAGTATTATTGATTGGGATGGGCTGTAGCACCCGCA
CTATGCATGTGCCGTTGCTATCTGCCGCTGTTAGAGAAGTGGACTTACTT
GGGAGTTTCAGGTATCGCAATGTATATCCTACGTGTTTGTCTCTCATAGA
ATCGGGGAGGATAGATGTGAGGAAACTGATTACGCACCGTGTGGACCTTT
CAGGGGAGGGGCGTTTCACGGCGGAGCTGGTGAAAGAGGGCTTTGCGTTG
TCGGAAAAAGGGGGAGATGTGGTGAAAGTGATGTTCAATCTGTAA
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protein sequence of NO18G01370.1

>NO18G01370.1-protein ID=NO18G01370.1-protein|Name=NO18G01370.1|organism=Nannochloropsis oceanica|type=polypeptide|length=365bp
MSPDSPPPPPLNNPAIFLNGIDCMTIGHYALPPLGAQDVRIAVKAVGICA
SDVHYLRKGRIADFIVKEPMVIGHESAGEVVAVGEAITALAVGDRVAMEP
GISCQRCKPCKTGAYNLCPDMKFFATPPVHGSLAHFVHHPADLCFPLPSP
LSYEDGAMCEPLAVGVYACIKANIRPGMRVLITGAGPIGLVTLLSARAFG
ASEIIITDVDERRLAIAAATAPGVKAVCVAGKITAEVLVMIGGPASVDVT
MDCAGFETTVEVALEATTNGGKVLLIGMGCSTRTMHVPLLSAAVREVDLL
GSFRYRNVYPTCLSLIESGRIDVRKLITHRVDLSGEGRFTAELVKEGFAL
SEKGGDVVKVMFNL*
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mRNA from alignment at chr18:462271..463365+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO18G01370.1 ID=NO18G01370.1|Name=NO18G01370.1|organism=Nannochloropsis oceanica|type=mRNA|length=1095bp|location=Sequence derived from alignment at chr18:462271..463365+ (Nannochloropsis oceanica)
ATGTCGCCCGACAGTCCACCACCACCGCCGCTCAACAATCCGGCCATCTT
TCTCAATGGCATCGACTGCATGACCATCGGACATTACGCCCTCCCGCCCC
TGGGGGCTCAAGACGTGCGCATCGCAGTTAAAGCCGTGGGTATATGTGCC
TCGGACGTACATTACTTGCGCAAAGGCCGCATTGCTGACTTCATCGTCAA
AGAACCCATGGTGATAGGCCACGAGAGCGCGGGAGAGGTGGTAGCCGTGG
GGGAGGCCATCACAGCTCTCGCCGTAGGAGATCGCGTGGCAATGGAACCA
GGCATATCCTGCCAGCGATGCAAGCCATGTAAAACCGGAGCTTATAATTT
ATGTCCGGACATGAAGTTCTTTGCGACCCCTCCCGTGCATGGTTCCCTCG
CGCACTTTGTCCACCACCCTGCGGACCTTTGCTTCCCCTTGCCCAGCCCC
TTATCCTATGAAGATGGTGCCATGTGTGAGCCACTTGCCGTGGGTGTGTA
TGCCTGCATCAAGGCCAATATTCGACCAGGGATGCGTGTACTCATCACAG
GGGCGGGACCCATTGGCTTGGTCACTCTTTTGAGCGCCCGTGCATTTGGG
GCCTCAGAGATAATAATTACAGATGTGGATGAACGACGACTTGCTATTGC
TGCTGCTACCGCACCAGGGGTGAAAGCCGTGTGCGTGGCAGGGAAGATCA
CAGCTGAAGTGCTAGTAATGATCGGAGGGCCAGCCTCTGTGGATGTCACG
ATGGACTGCGCAGGTTTTGAGACCACTGTGGAGGTCGCATTGGAGGCAAC
GACCAACGGAGGAAAAGTATTATTGATTGGGATGGGCTGTAGCACCCGCA
CTATGCATGTGCCGTTGCTATCTGCCGCTGTTAGAGAAGTGGACTTACTT
GGGAGTTTCAGGTATCGCAATGTATATCCTACGTGTTTGTCTCTCATAGA
ATCGGGGAGGATAGATGTGAGGAAACTGATTACGCACCGTGTGGACCTTT
CAGGGGAGGGGCGTTTCACGGCGGAGCTGGTGAAAGAGGGCTTTGCGTTG
TCGGAAAAAGGGGGAGATGTGGTGAAAGTGATGTTCAATCTGTAA
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Coding sequence (CDS) from alignment at chr18:462271..463365+

>NO18G01370.1 ID=NO18G01370.1|Name=NO18G01370.1|organism=Nannochloropsis oceanica|type=CDS|length=1095bp|location=Sequence derived from alignment at chr18:462271..463365+ (Nannochloropsis oceanica)
ATGTCGCCCGACAGTCCACCACCACCGCCGCTCAACAATCCGGCCATCTT
TCTCAATGGCATCGACTGCATGACCATCGGACATTACGCCCTCCCGCCCC
TGGGGGCTCAAGACGTGCGCATCGCAGTTAAAGCCGTGGGTATATGTGCC
TCGGACGTACATTACTTGCGCAAAGGCCGCATTGCTGACTTCATCGTCAA
AGAACCCATGGTGATAGGCCACGAGAGCGCGGGAGAGGTGGTAGCCGTGG
GGGAGGCCATCACAGCTCTCGCCGTAGGAGATCGCGTGGCAATGGAACCA
GGCATATCCTGCCAGCGATGCAAGCCATGTAAAACCGGAGCTTATAATTT
ATGTCCGGACATGAAGTTCTTTGCGACCCCTCCCGTGCATGGTTCCCTCG
CGCACTTTGTCCACCACCCTGCGGACCTTTGCTTCCCCTTGCCCAGCCCC
TTATCCTATGAAGATGGTGCCATGTGTGAGCCACTTGCCGTGGGTGTGTA
TGCCTGCATCAAGGCCAATATTCGACCAGGGATGCGTGTACTCATCACAG
GGGCGGGACCCATTGGCTTGGTCACTCTTTTGAGCGCCCGTGCATTTGGG
GCCTCAGAGATAATAATTACAGATGTGGATGAACGACGACTTGCTATTGC
TGCTGCTACCGCACCAGGGGTGAAAGCCGTGTGCGTGGCAGGGAAGATCA
CAGCTGAAGTGCTAGTAATGATCGGAGGGCCAGCCTCTGTGGATGTCACG
ATGGACTGCGCAGGTTTTGAGACCACTGTGGAGGTCGCATTGGAGGCAAC
GACCAACGGAGGAAAAGTATTATTGATTGGGATGGGCTGTAGCACCCGCA
CTATGCATGTGCCGTTGCTATCTGCCGCTGTTAGAGAAGTGGACTTACTT
GGGAGTTTCAGGTATCGCAATGTATATCCTACGTGTTTGTCTCTCATAGA
ATCGGGGAGGATAGATGTGAGGAAACTGATTACGCACCGTGTGGACCTTT
CAGGGGAGGGGCGTTTCACGGCGGAGCTGGTGAAAGAGGGCTTTGCGTTG
TCGGAAAAAGGGGGAGATGTGGTGAAAGTGATGTTCAATCTGTAA
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Synonyms
Publications