NO18G01200.1, NO18G01200.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO18G01200.1
Unique NameNO18G01200.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2831
Alignment locationchr18:417760..420684 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr18genomechr18:417760..420684 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO18G01200.1 vs.
Match: EWM23303.1 (stage iv sporulation protein fb [Nannochloropsis gaditana])

HSP 1 Score: 586.3 bits (1510), Expect = 7.500e-164
Identity = 310/412 (75.24%), Postives = 340/412 (82.52%), Query Frame = 0 
Query:    1 MNR-TGTGNNPAGVADNPFPKQWAWQMGTIHLKGQVVPVKLHFLLPIFWVLSLLSGLAYGGTYIGFRFIIDVLILFVTVFAHELGHSYAAIQYSGKCHCITLWPLGGFAEVTHEQGPKEDLWVSFAGPLTHVPMCAIWYGIVAAVVRGPFNIMTIPCDLFNSQPCFWTNVCVSAGFLNICLFLFNLLIPAYPLDASRILVDFFALCKVEVNKAALITAGISMPIGLGLLCYGFWGFSRGAANYTMTLFLAIFILYSTWGVFKAARSGNAARHPMFVHYYRTSVPVDASSSSSSSSSTTGFGAANATAGGRIMSLWGGGSATAGADGDPAGTGGPVATSGGVTAFSKMEAGKGHRLGGKAAPTGVPAAAPVGGGRSTSQSALLSSQGSSSS---SNILGGPPGGKGGHRLGSK 409
            MNR TGTGNNPAGVADNPFP QWAWQ+G I L+GQ VPVKLHFLLPIFWVLSLLSGLAYGGTYIGFRFI+DVLILF+TVF HE+GHS AAIQYSGKCHCITLWPLGGFAEVTHE+GPKEDLWVSFAGPLTH+PMCAIWYGIVAAVV+ PFNIM IPCDL +SQ CFWTNV VSAGFLN+CLFLFNL IPAYPLDASRILVDFFALC VEVN+AALITA IS PIGL LL YGFW F+RGAANYTMT+FLAIFILYSTWGV KAARSG AARHPMF+HYYRTS P  +++++SSS++    G A++TAGG+I SLWG G     A G   G GG    S G    SKMEAGKGHRLGGK   +  PA     G R+TSQSALL+   SSS+   S+ LGG    KGG+RLGSK
Sbjct:    1 MNRNTGTGNNPAGVADNPFPNQWAWQIGAITLRGQRVPVKLHFLLPIFWVLSLLSGLAYGGTYIGFRFIVDVLILFMTVFIHEMGHSLAAIQYSGKCHCITLWPLGGFAEVTHEKGPKEDLWVSFAGPLTHIPMCAIWYGIVAAVVKRPFNIMAIPCDLLHSQACFWTNVAVSAGFLNMCLFLFNLFIPAYPLDASRILVDFFALCNVEVNRAALITACISFPIGLALLGYGFWAFARGAANYTMTIFLAIFILYSTWGVIKAARSGTAARHPMFIHYYRTSEPPVSATAASSSNA----GTASSTAGGQITSLWGSGLVGTSAAG--TGVGG---ESTGGNVLSKMEAGKGHRLGGKPVTSSTPAGNLAVGARTTSQSALLTGSSSSSAAAGSSTLGG--ASKGGYRLGSK 401
The following BLAST results are available for this feature:
BLAST of NO18G01200.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23303.17.500e-16475.24stage iv sporulation protein fb [Nannochloropsis g... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO18G01200NO18G01200Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO18G01200.1NO18G01200.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO18G01200.1.cds1NO18G01200.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO18G01200.1.cds2NO18G01200.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO18G01200.1 ID=NO18G01200.1|Name=NO18G01200.1|organism=Nannochloropsis oceanica|type=mRNA|length=2831bp
ATAGAGAGATGATGCCCAAGTTATGCCTTCTCCCCGAAACAGTGCATAGC
ATACCCCTCAAACGCCGAGTCCCATTGATCCTTCAATGCGCACAACCCAC
AACCAGCACTTTGTTGCCTCGGAGCTGTCGCACGCTCCTTCTATTCCTCC
CACCGCATACTTGACAGGCGCAAACTAAAGCTGCTTCTGGGCCTTGCTTC
GTCGTGCTCTGGGTTGTTCTGCTATCGCTTCCCGCGCTACGACGTCCAAG
CGCACAATACCGACGCTCATCTCTTTTCTCGAACCTGTCACCATCACAGT
ATACTCAGAAGCCTGTCTATTCTTACTTCTCCGCGGTTTTCTTTTCACCC
AAGTCCCCTATTCAGCCACGGCCAGTAACACGCCCCTCATCATGAACCGC
ACTGGCACGGGCAACAACCCGGCTGGCGTTGCGGACAATCCCTTCCCGAA
GCAATGGGCATGGCAAATGGGCACGATTCATCTCAAGGGGCAGGTGGTGC
CGGTCAAGCTTCATTTCCTGCTCCCCATTTTCTGGGTCTTGAGCTTGCTG
TCCGGCCTGGCGTATGGAGGGACTTACATTGGTTTTCGGTTTATCATCGA
TGTGCTCATCTTATTCGTGACAGTGTTTGCCCACGAGCTCGGGCATAGTT
ACGCCGCCATTCAGTACAGTGGGAAATGCCATTGTATTACTCTGTGGCCC
CTTGGGGGTTTTGCGGAAGTCACGCATGAGCAGGGCCCGAAGGAGGACTT
GTGGGTGTCGTTTGCTGGCCCGTTGACGCACGTGCCGATGTGCGCTATTT
GGTATGGAATTGTCGCGGCGGTTGTAAGGGGACCCTTCAATATTATGACC
ATCCCGTGCGATCTTTTCAACTCTCAACCCTGCTTCTGGACCAATGTCTG
CGTCTCCGCCGGCTTTTTGAATATCTGCCTGTTTCTCTTCAACCTGTTGA
TCCCCGCCTACCCCCTGGACGCCTCCCGCATTCTCGTCGATTTTTTCGCT
TTGTGCAAAGTAGAAGTAAACAAGGCGGCGCTCATAACGGCAGGGATTTC
TATGCCCATCGGTTTGGGGTTGCTATGCTATGGGTTTTGGGGTTTTTCCA
GGGGGGCAGCTAACTATACAATGACTCTTTTTCTTGCTATTTTTATCCTG
TACTCCACCTGGGGGGTGTTTAAGGCCGCCCGATCGGGCAACGCTGCCAG
GCATCCTATGTTTGTTCATTACTATCGCACCAGCGTGCCAGTCGACGCCT
CAAGCAGCAGTAGCAGCAGCAGTAGCACTACGGGTTTTGGAGCAGCGAAC
GCAACAGCTGGAGGGAGAATCATGTCGCTGTGGGGAGGGGGGAGTGCCAC
GGCTGGCGCGGATGGGGATCCTGCTGGTACGGGCGGACCTGTTGCTACAA
GTGGTGGGGTCACTGCCTTCTCAAAAATGGAAGCAGGCAAGGGGCATCGG
TTGGGAGGGAAGGCGGCACCAACAGGAGTGCCTGCAGCAGCACCAGTGGG
AGGAGGGAGGAGCACGAGTCAATCGGCCTTGTTGTCCTCGCAGGGGTCCT
CGTCGTCATCTAATATTTTGGGAGGGCCACCCGGTGGGAAGGGTGGTCAT
CGGTTGGGCTCAAAATAACAAGGAGGGGGAAAGGAAGGGTAGAAGGATGT
GAGATGCGATGTGAAAAAATGAGTGTTGCGGAAATTGAGTCTTTCTGTGA
CCGTGGTATGCAAACAGAAGAAGCAATCAAGTGAGGGAAAAGAGAAGCAT
AAGGAATCAGTAGTCAAAAAGAGGAAGAAGAGGTCGTGTACATTGATGGC
GGGATCTGCCACGGACTTGAGAGAGACGCCTTATATTTCATAAAGTTATC
CCTTCCATTACTCTCGTACAATCACAATATAACAAGAAAAAGAAACAGAC
GAAAGTATGATAAAAAAGAGGCCAAAGCATCAGCGGCACACCATCATCCA
ACACAAAAAGAATGAACTAAGAGTGAGGAGGAAACTGATTGACAACGAGA
GGACAAATGATTTCATCTCTCTTTTGGGATTGTTCAGGAGGAAAATGATA
GGCAATGAGAAAGCAACTTGTTTCATCTCTCTTTTCGGGTTGTTCTTTCC
TTGTGCAAATCGCTCCTTCCGCCGCCCTTCCTTTTTACACCATCCTAGTT
GGCCGCTTCTCCTACTTTTCTTAGACCTTTTCCTAGTCTTGCCCCTCTTC
TTCTCTTCGGGGCTGTCCCCCACCTTGCCACTCTTTCTGTCGACCCACCA
AGCTCCTAATTGACTCTTTCTCCGTCGTTTTTCATCCAAGCCCAATGCCA
TCTTTCACCTCCATCTCTTTCCCCGCACCTGCTGGCCTGAGGGTATGGAA
ATAAACCTCACTTTATCTCTATATTCCTTTCGCTGCCATCCCCCTCGTGT
TGTTTCCCTCCTCCCTATCCCGCGATTCCTACGTCTCCTCTCTTCCTCCC
TTCCACCTCTCCACCGGCGTGGAGAGGGAAAGACAATAGCAGCAGCAGCA
GCAGCAGCAGCGAGTAGCGGGCATGCTTGCATATTGTGCATTGTGATTAT
TTTATTTTTCCCACCCACAAATGGAAAGCCCGCACGCGAGCTTCCTTCAT
ATTTGCCTACCATCCACCGCTATCCACTCGACGCATCAGTCCTATCGCAC
CCGATTTTCTCTCTGTTCGCACTCTCTTGTTCCTCTCCTCCTTCTGTCTG
TATGTAACTCTTTCGCAGCCCAAAAGAGAGCAAGAAGTAAGACAAGACGA
CTTTTTCCTCTTCTTCAGTCTACCAGTTGGAACACACAAGAAATGCGCAC
AACACATACACACACACACACACACACACAC
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protein sequence of NO18G01200.1

>NO18G01200.1-protein ID=NO18G01200.1-protein|Name=NO18G01200.1|organism=Nannochloropsis oceanica|type=polypeptide|length=409bp
MNRTGTGNNPAGVADNPFPKQWAWQMGTIHLKGQVVPVKLHFLLPIFWVL
SLLSGLAYGGTYIGFRFIIDVLILFVTVFAHELGHSYAAIQYSGKCHCIT
LWPLGGFAEVTHEQGPKEDLWVSFAGPLTHVPMCAIWYGIVAAVVRGPFN
IMTIPCDLFNSQPCFWTNVCVSAGFLNICLFLFNLLIPAYPLDASRILVD
FFALCKVEVNKAALITAGISMPIGLGLLCYGFWGFSRGAANYTMTLFLAI
FILYSTWGVFKAARSGNAARHPMFVHYYRTSVPVDASSSSSSSSSTTGFG
AANATAGGRIMSLWGGGSATAGADGDPAGTGGPVATSGGVTAFSKMEAGK
GHRLGGKAAPTGVPAAAPVGGGRSTSQSALLSSQGSSSSSNILGGPPGGK
GGHRLGSK*
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mRNA from alignment at chr18:417760..420684+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO18G01200.1 ID=NO18G01200.1|Name=NO18G01200.1|organism=Nannochloropsis oceanica|type=mRNA|length=2925bp|location=Sequence derived from alignment at chr18:417760..420684+ (Nannochloropsis oceanica)
ATAGAGAGATGATGCCCAAGTTATGCCTTCTCCCCGAAACAGTGCATAGC
ATACCCCTCAAACGCCGAGTCCCATTGATCCTTCAATGCGCACAACCCAC
AACCAGCACTTTGTTGCCTCGGAGCTGTCGCACGCTCCTTCTATTCCTCC
CACCGCATACTTGACAGGCGCAAACTAAAGCTGCTTCTGGGCCTTGCTTC
GTCGTGCTCTGGGTTGTTCTGCTATCGCTTCCCGCGCTACGACGTCCAAG
CGCACAATACCGACGCTCATCTCTTTTCTCGAACCTGTCACCATCACAGT
ATACTCAGAAGCCTGTCTATTCTTACTTCTCCGCGGTTTTCTTTTCACCC
AAGTCCCCTATTCAGCCACGGCCAGTAACACGCCCCTCATCATGAACCGC
ACTGGCACGGGCAACAACCCGGCTGGCGTTGCGGACAATCCCTTCCCGAA
GCAATGGGCATGGCAAATGGGCACGATTCATCTCAAGGGGCAGGTGGTGC
CGGTCAAGCTTCATTTCCTGCTCCCCATTTTCTGGGTCTTGAGCTTGCTG
TCCGGCCTGGCGTATGGAGGGACTTACATTGGTTTTCGGTTTATCATCGA
TGTGCTCATCTTATTCGTGACAGTGTTTGCCCACGAGCTCGGGCATAGTT
ACGCCGCCATTCAGTACAGTGGGAAATGCCATTGTATTACTCTGTGGCCC
CTTGGGGGTTTTGCGGAAGTCACGCATGAGCAGGGCCCGAAGGAGGACTT
GTGGGTGTCGTTTGCTGGCCCGTTGACGCACGTGCCGATGTGCGCTATTT
GGTATGGAATTGTCGCGGCGGTTGTAAGGGGACCCTTCAATATTATGAGT
ACGTACGAGGGTTGTGTGTGTCATTATTGAGGGTTTGTTCCATCCAACGC
AATCCTCAACCTCCTCTCTCTTCTCTCCCCCATCCCCTTTAGCCATCCCG
TGCGATCTTTTCAACTCTCAACCCTGCTTCTGGACCAATGTCTGCGTCTC
CGCCGGCTTTTTGAATATCTGCCTGTTTCTCTTCAACCTGTTGATCCCCG
CCTACCCCCTGGACGCCTCCCGCATTCTCGTCGATTTTTTCGCTTTGTGC
AAAGTAGAAGTAAACAAGGCGGCGCTCATAACGGCAGGGATTTCTATGCC
CATCGGTTTGGGGTTGCTATGCTATGGGTTTTGGGGTTTTTCCAGGGGGG
CAGCTAACTATACAATGACTCTTTTTCTTGCTATTTTTATCCTGTACTCC
ACCTGGGGGGTGTTTAAGGCCGCCCGATCGGGCAACGCTGCCAGGCATCC
TATGTTTGTTCATTACTATCGCACCAGCGTGCCAGTCGACGCCTCAAGCA
GCAGTAGCAGCAGCAGTAGCACTACGGGTTTTGGAGCAGCGAACGCAACA
GCTGGAGGGAGAATCATGTCGCTGTGGGGAGGGGGGAGTGCCACGGCTGG
CGCGGATGGGGATCCTGCTGGTACGGGCGGACCTGTTGCTACAAGTGGTG
GGGTCACTGCCTTCTCAAAAATGGAAGCAGGCAAGGGGCATCGGTTGGGA
GGGAAGGCGGCACCAACAGGAGTGCCTGCAGCAGCACCAGTGGGAGGAGG
GAGGAGCACGAGTCAATCGGCCTTGTTGTCCTCGCAGGGGTCCTCGTCGT
CATCTAATATTTTGGGAGGGCCACCCGGTGGGAAGGGTGGTCATCGGTTG
GGCTCAAAATAACAAGGAGGGGGAAAGGAAGGGTAGAAGGATGTGAGATG
CGATGTGAAAAAATGAGTGTTGCGGAAATTGAGTCTTTCTGTGACCGTGG
TATGCAAACAGAAGAAGCAATCAAGTGAGGGAAAAGAGAAGCATAAGGAA
TCAGTAGTCAAAAAGAGGAAGAAGAGGTCGTGTACATTGATGGCGGGATC
TGCCACGGACTTGAGAGAGACGCCTTATATTTCATAAAGTTATCCCTTCC
ATTACTCTCGTACAATCACAATATAACAAGAAAAAGAAACAGACGAAAGT
ATGATAAAAAAGAGGCCAAAGCATCAGCGGCACACCATCATCCAACACAA
AAAGAATGAACTAAGAGTGAGGAGGAAACTGATTGACAACGAGAGGACAA
ATGATTTCATCTCTCTTTTGGGATTGTTCAGGAGGAAAATGATAGGCAAT
GAGAAAGCAACTTGTTTCATCTCTCTTTTCGGGTTGTTCTTTCCTTGTGC
AAATCGCTCCTTCCGCCGCCCTTCCTTTTTACACCATCCTAGTTGGCCGC
TTCTCCTACTTTTCTTAGACCTTTTCCTAGTCTTGCCCCTCTTCTTCTCT
TCGGGGCTGTCCCCCACCTTGCCACTCTTTCTGTCGACCCACCAAGCTCC
TAATTGACTCTTTCTCCGTCGTTTTTCATCCAAGCCCAATGCCATCTTTC
ACCTCCATCTCTTTCCCCGCACCTGCTGGCCTGAGGGTATGGAAATAAAC
CTCACTTTATCTCTATATTCCTTTCGCTGCCATCCCCCTCGTGTTGTTTC
CCTCCTCCCTATCCCGCGATTCCTACGTCTCCTCTCTTCCTCCCTTCCAC
CTCTCCACCGGCGTGGAGAGGGAAAGACAATAGCAGCAGCAGCAGCAGCA
GCAGCGAGTAGCGGGCATGCTTGCATATTGTGCATTGTGATTATTTTATT
TTTCCCACCCACAAATGGAAAGCCCGCACGCGAGCTTCCTTCATATTTGC
CTACCATCCACCGCTATCCACTCGACGCATCAGTCCTATCGCACCCGATT
TTCTCTCTGTTCGCACTCTCTTGTTCCTCTCCTCCTTCTGTCTGTATGTA
ACTCTTTCGCAGCCCAAAAGAGAGCAAGAAGTAAGACAAGACGACTTTTT
CCTCTTCTTCAGTCTACCAGTTGGAACACACAAGAAATGCGCACAACACA
TACACACACACACACACACACACAC
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Coding sequence (CDS) from alignment at chr18:417760..420684+

>NO18G01200.1 ID=NO18G01200.1|Name=NO18G01200.1|organism=Nannochloropsis oceanica|type=CDS|length=1227bp|location=Sequence derived from alignment at chr18:417760..420684+ (Nannochloropsis oceanica)
ATGAACCGCACTGGCACGGGCAACAACCCGGCTGGCGTTGCGGACAATCC
CTTCCCGAAGCAATGGGCATGGCAAATGGGCACGATTCATCTCAAGGGGC
AGGTGGTGCCGGTCAAGCTTCATTTCCTGCTCCCCATTTTCTGGGTCTTG
AGCTTGCTGTCCGGCCTGGCGTATGGAGGGACTTACATTGGTTTTCGGTT
TATCATCGATGTGCTCATCTTATTCGTGACAGTGTTTGCCCACGAGCTCG
GGCATAGTTACGCCGCCATTCAGTACAGTGGGAAATGCCATTGTATTACT
CTGTGGCCCCTTGGGGGTTTTGCGGAAGTCACGCATGAGCAGGGCCCGAA
GGAGGACTTGTGGGTGTCGTTTGCTGGCCCGTTGACGCACGTGCCGATGT
GCGCTATTTGGTATGGAATTGTCGCGGCGGTTGTAAGGGGACCCTTCAAT
ATTATGACCATCCCGTGCGATCTTTTCAACTCTCAACCCTGCTTCTGGAC
CAATGTCTGCGTCTCCGCCGGCTTTTTGAATATCTGCCTGTTTCTCTTCA
ACCTGTTGATCCCCGCCTACCCCCTGGACGCCTCCCGCATTCTCGTCGAT
TTTTTCGCTTTGTGCAAAGTAGAAGTAAACAAGGCGGCGCTCATAACGGC
AGGGATTTCTATGCCCATCGGTTTGGGGTTGCTATGCTATGGGTTTTGGG
GTTTTTCCAGGGGGGCAGCTAACTATACAATGACTCTTTTTCTTGCTATT
TTTATCCTGTACTCCACCTGGGGGGTGTTTAAGGCCGCCCGATCGGGCAA
CGCTGCCAGGCATCCTATGTTTGTTCATTACTATCGCACCAGCGTGCCAG
TCGACGCCTCAAGCAGCAGTAGCAGCAGCAGTAGCACTACGGGTTTTGGA
GCAGCGAACGCAACAGCTGGAGGGAGAATCATGTCGCTGTGGGGAGGGGG
GAGTGCCACGGCTGGCGCGGATGGGGATCCTGCTGGTACGGGCGGACCTG
TTGCTACAAGTGGTGGGGTCACTGCCTTCTCAAAAATGGAAGCAGGCAAG
GGGCATCGGTTGGGAGGGAAGGCGGCACCAACAGGAGTGCCTGCAGCAGC
ACCAGTGGGAGGAGGGAGGAGCACGAGTCAATCGGCCTTGTTGTCCTCGC
AGGGGTCCTCGTCGTCATCTAATATTTTGGGAGGGCCACCCGGTGGGAAG
GGTGGTCATCGGTTGGGCTCAAAATAA
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Synonyms
Publications