NO18G00830.1, NO18G00830.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO18G00830.1
Unique Name	NO18G00830.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	969
Alignment location	chr18:316625..318205 -

Link to JBrowse

Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr18	genome	chr18:316625..318205 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

The following BLAST results are available for this feature:

BLAST of NO18G00830.1 vs.

BLAST of NO18G00830.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO18G00830	NO18G00830	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO18G00830.1	NO18G00830.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO18G00830.1.cds1	NO18G00830.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO18G00830.1.cds2	NO18G00830.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO18G00830.1.cds3	NO18G00830.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO18G00830.1.cds4	NO18G00830.1.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr18:316625..318205-
coding sequence from alignment at chr18:316625..318205-

mRNA sequence

>NO18G00830.1 ID=NO18G00830.1|Name=NO18G00830.1|organism=Nannochloropsis oceanica|type=mRNA|length=969bp
TAGTAATTGATGATTGCCTGGTGTTTTTTTGGCATTTTTTCAACACAAGG
TACGTGCCCTTGGCCCATCGTAAGTGCCCTGTGGCCCATCGTGTCTTTTC
TATAGTAGCGACCCGCAAAAACAAAATATAGGTTCTTGCCAGGCTAGTCC
TTTACCCCGCTTGTCTTGTCGACAGATTTCTCTCTCGGGGGTCAAGCAGG
TCTCGAACCATCACACCAAGAACAACAACAACAAATTATTGTTCACTGCA
GCGGACCTGCTCGATGAATGCGTCTATGAAATGCCCTATGACATACCAAT
AAACAAGAGATATGCTTCAAATAAACAAATCAAGGGATTGCTGGCAGATT
CACACACTCCCTAGGCGTCCCTCCAACGGATCCATAGCCTCCCAAGATCA
AGAAACACCTGACTGGTAAAGACGACAAACATCCAATTCTTACGAGTCCC
CCCCCTTTGACCGTAGGTCAACCTTGGCTTACAAGCCCCCCGAGTGAAGA
GTGATGGAAATGGCTGTCGATGTGGATGCCATTTGTGAAGGGGTGATTGT
GATGTGTTTAATCTCTCATGCTTCCTATAAACTTATGTTCCTGATGAATG
TTGATAGATAGAGTAGTGTCCTTACATGTAGGAACGCTGCGGAAGGAAGG
CTACGCGGATCACCTGGACAACCTCAACAGCAACGGCAGCACGGCCCTCT
GCTGGGGCTCATTTTGCGGTCATACGCACGTAACTCGCCTGCTCCAGATG
GTCGCCCAGAATGTGGGCACCAGGGCTGCACCGAGCTGCTCCAGGTCTTC
CTCCTCGAGCCCACATGCACGTTCCTCCTCCATAAACTCCGAGCTCCGAG
CTATCGGTAATGTCCGACACGCATACCAACGGGATTCATCCCCCAGCTAC
CATCACCACCACCACCACCACCCAGCAGCAACAACAACACCAACAGGAAC
AGTAGCAGCCCGGGGATAA

protein sequence of NO18G00830.1

>NO18G00830.1-protein ID=NO18G00830.1-protein|Name=NO18G00830.1|organism=Nannochloropsis oceanica|type=polypeptide|length=124bp
MLIDRVVSLHVGTLRKEGYADHLDNLNSNGSTALCWGSFCGHTHVTRLLQ
MVAQNVGTRAAPSCSRSSSSSPHARSSSINSELRAIGNVRHAYQRDSSPS
YHHHHHHHPAATTTPTGTVAARG*

mRNA from alignment at chr18:316625..318205-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO18G00830.1 ID=NO18G00830.1|Name=NO18G00830.1|organism=Nannochloropsis oceanica|type=mRNA|length=1581bp|location=Sequence derived from alignment at chr18:316625..318205- (Nannochloropsis oceanica)
TAGTAATTGATGATTGCCTGGTGTTTTTTTGGCATTTTTTCAACACAAGG
TACGTGCCCTTGGCCCATCGTAAGTGCCCTGTGGCCCATCGTGTCTTTTC
TATAGTAGCGACCCGCAAAAACAAAATATAGGTTCTTGCCAGGCTAGTCC
TTTACCCCGCTTGTCTTGTCGACAGATTTCTCTCTCGGGGGTCAAGCAGG
TCTCGAACCATCACACCAAGAACAACAACAACAAATTATTGTTCACTGCA
GCGGACCTGCTCGATGAATGCGTCTATGAAATGCCCTATGACATACCAAT
AAACAAGAGATATGCTTCAAATAAACAAATCAAGGGATTGCTGGCAGATT
CACACACTCCCTAGGCGTCCCTCCAACGGATCCATAGCCTCCCAAGATCA
AGAAACACCTGACTGGTAAAGACGACAAACATCCAATTCTTACGAGTCCC
CCCCCTTTGACCGTAGGTCAACCTTGGCTTACAAGCCCCCCGAGTGAAGA
GTGATGGAAATGGCTGTCGATGTGGATGCCATTTGTGAAGGGGTGATTGT
GATGTGTTTAATCTCTCATGCTTCCTATAAACTTATGTTCCTGATGAATG
TTGATAGATAGAGTAGTGTCCTTACATGTAGGAACGCTGCGGAAGGAAGG
TAAGGAGGGGGGGGGGGGGGAGGAGGAGGAACTGAGGGAGGCTGACATGG
TCGTATTTCTCACTGAGTCCTCGGTAAAACAAAATTTTCCTCCCTCCTCC
CCTCCATCCCTCCCTCCTTCCTTCCTTCAGGCTACGCGGATCACCTGGAC
AACCTCAACAGCAACGGCAGCACGGCCCTCTGCTGGGGCTCATTTTGCGG
TCATACGCACGTAACTCGCCTGCTCCAGATGGTCGGTACGTCCCCCCTCC
CTCCCTCCCGCCCTCCCTCGGTATATGTCTGGCACCCTGCCTCTGGAGTC
CTTGCATCCCTCCCTCCCTCCCTCCCTCCCTACCCCCCTCCCTCCACCCT
TCTACCCCCGTCATTCGAAAAATTCCATCCCAAGCGTTTCAACACACCAC
ATTCCCTTCTGTCTGTCCCTCTCTCCCTCCCTTATGCAGGCACTAATCCC
GCCATCGCCAATAATGACGGTCGCGGCCCTCTCGTCTAAGCCCAGAATGT
GGGCACCAGGGCTGCACCGAGCTGCTCCAGGTAAGTCCTCCTTCCCTCCC
TCCCTCCCTCTCTCTCTCTTTTCCTCACTACAATCTTTCCATTTAATCCC
GCCACGCCCTCCCTCCCCTTTTCCTTCCCCCCCTCCCTCCGATCTTCATT
GTGTCCCAATCCTCCCTCCCCCCCTTCCTCTTTTCCCCTCTCCTCCCCTC
CCTCTCTCTTTCATTCTACCCCTTCCCTCCCTCCCTCCCTCTTTCCGTCC
TTCCAGGTCTTCCTCCTCGAGCCCACATGCACGTTCCTCCTCCATAAACT
CCGAGCTCCGAGCTATCGGTAATGTCCGACACGCATACCAACGGGATTCA
TCCCCCAGCTACCATCACCACCACCACCACCACCCAGCAGCAACAACAAC
ACCAACAGGAACAGTAGCAGCCCGGGGATAA

Coding sequence (CDS) from alignment at chr18:316625..318205-

>NO18G00830.1 ID=NO18G00830.1|Name=NO18G00830.1|organism=Nannochloropsis oceanica|type=CDS|length=372bp|location=Sequence derived from alignment at chr18:316625..318205- (Nannochloropsis oceanica)
ATGTTGATAGATAGAGTAGTGTCCTTACATGTAGGAACGCTGCGGAAGGA
AGGCTACGCGGATCACCTGGACAACCTCAACAGCAACGGCAGCACGGCCC
TCTGCTGGGGCTCATTTTGCGGTCATACGCACGTAACTCGCCTGCTCCAG
ATGGTCGCCCAGAATGTGGGCACCAGGGCTGCACCGAGCTGCTCCAGGTC
TTCCTCCTCGAGCCCACATGCACGTTCCTCCTCCATAAACTCCGAGCTCC
GAGCTATCGGTAATGTCCGACACGCATACCAACGGGATTCATCCCCCAGC
TACCATCACCACCACCACCACCACCCAGCAGCAACAACAACACCAACAGG
AACAGTAGCAGCCCGGGGATAA

Synonyms

Publications