NO18G00690.1, NO18G00690.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO18G00690.1
Unique NameNO18G00690.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length823
Alignment locationchr18:281701..282523 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr18genomechr18:281701..282523 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO18G00690.1 vs.
Match: EWM23280.1 (fun14 family protein [Nannochloropsis gaditana])

HSP 1 Score: 188.0 bits (476), Expect = 3.300e-44
Identity = 105/223 (47.09%), Postives = 142/223 (63.68%), Query Frame = 0 
Query:    5 LLRARPQNRTSTTAFINRFIALPQQSCPGALSIATTT-TLTFKRGSRLLAICTFIAAANQDLKALSYSPSFCQPASSSSNSSTAPS-HRPVSSYPPNPNNGDDDEEVEGILSRALGPLGGEITLSGALGFGAGYSLKKISKAAAFFIGIAFVASQIFGHLGYVEVNWRKVEREVMRLFDLDGDQRLTTRDVAMYWKKLKGMLMHKLPNTTAFAAFFTLGLQKG 226
            +LR    +    T+ +   +     S P  L++ +T   LT +RGSR LA  +F+A+  QDL+ LS S S+C PAS      + PS H     Y     +  D ++    + +ALG +GGEIT +GALGFGAGY+LKKI K AA F+G+AF+ASQ  G +GYVEVNW+K+E EV++  DLDGD +LT +DVA+YW K+K +LMH LP+T  F A F LGLQKG
Sbjct:    1 MLRPCSLSHPGPTSLVQNHLLPQTCSRPTRLTLTSTKRVLTLRRGSRFLAFLSFVASTTQDLRRLS-SSSYCSPASRRRPLPSFPSTHLRKEEYNTRRKDSGDGDD---FIPKALGSIGGEITFNGALGFGAGYTLKKIGKMAAIFLGVAFIASQSLGRMGYVEVNWKKIEGEVLKFLDLDGDDKLTVKDVALYWDKMKRVLMHNLPSTATFTAMFVLGLQKG 219
The following BLAST results are available for this feature:
BLAST of NO18G00690.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23280.13.300e-4447.09fun14 family protein [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO18G00690NO18G00690Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO18G00690.1NO18G00690.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO18G00690.1.cds1NO18G00690.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO18G00690.1 ID=NO18G00690.1|Name=NO18G00690.1|organism=Nannochloropsis oceanica|type=mRNA|length=823bp
ACACCCACAGAAGCCTTGCACATCCACATAATACACAAGTCTTCATTAAA
GATATCACGGCTCTTTTTTTGTCGTAGCACGCACTGCCTGTTCACTCTCC
CGCAAAACCATCATGATCGAGAGCCTGCTTCGAGCTCGCCCTCAAAACCG
GACCAGCACCACAGCCTTTATCAATCGTTTTATCGCCCTACCACAACAAA
GCTGCCCTGGCGCCCTAAGTATAGCGACCACAACCACACTGACATTCAAG
CGCGGCTCGCGGCTTCTAGCAATATGTACTTTTATCGCGGCTGCTAATCA
AGACCTCAAAGCCCTCTCTTATTCCCCATCTTTCTGCCAACCTGCCTCTT
CCTCCTCCAATTCCAGCACAGCCCCCAGTCATCGTCCCGTCTCCTCCTAC
CCTCCCAACCCTAACAATGGTGACGACGACGAGGAAGTAGAAGGCATCTT
ATCTCGTGCTCTTGGCCCGTTGGGAGGGGAGATAACATTAAGTGGTGCCT
TGGGGTTTGGTGCCGGGTACTCTCTGAAGAAAATAAGCAAGGCGGCCGCA
TTTTTCATTGGAATTGCGTTTGTGGCATCGCAAATATTTGGTCATTTGGG
GTATGTGGAGGTAAATTGGCGGAAGGTTGAGAGGGAGGTAATGCGGTTAT
TCGATTTGGATGGCGATCAGAGATTGACGACAAGGGACGTGGCGATGTAT
TGGAAAAAGTTGAAGGGGATGTTGATGCATAAGCTACCAAACACGACGGC
GTTCGCGGCATTTTTTACCTTAGGGCTGCAGAAGGGTTAGGGTCTGGAAT
ATGAAGGGAGGGGCGGGAGGGAG
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protein sequence of NO18G00690.1

>NO18G00690.1-protein ID=NO18G00690.1-protein|Name=NO18G00690.1|organism=Nannochloropsis oceanica|type=polypeptide|length=226bp
MIESLLRARPQNRTSTTAFINRFIALPQQSCPGALSIATTTTLTFKRGSR
LLAICTFIAAANQDLKALSYSPSFCQPASSSSNSSTAPSHRPVSSYPPNP
NNGDDDEEVEGILSRALGPLGGEITLSGALGFGAGYSLKKISKAAAFFIG
IAFVASQIFGHLGYVEVNWRKVEREVMRLFDLDGDQRLTTRDVAMYWKKL
KGMLMHKLPNTTAFAAFFTLGLQKG*
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mRNA from alignment at chr18:281701..282523+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO18G00690.1 ID=NO18G00690.1|Name=NO18G00690.1|organism=Nannochloropsis oceanica|type=mRNA|length=823bp|location=Sequence derived from alignment at chr18:281701..282523+ (Nannochloropsis oceanica)
ACACCCACAGAAGCCTTGCACATCCACATAATACACAAGTCTTCATTAAA
GATATCACGGCTCTTTTTTTGTCGTAGCACGCACTGCCTGTTCACTCTCC
CGCAAAACCATCATGATCGAGAGCCTGCTTCGAGCTCGCCCTCAAAACCG
GACCAGCACCACAGCCTTTATCAATCGTTTTATCGCCCTACCACAACAAA
GCTGCCCTGGCGCCCTAAGTATAGCGACCACAACCACACTGACATTCAAG
CGCGGCTCGCGGCTTCTAGCAATATGTACTTTTATCGCGGCTGCTAATCA
AGACCTCAAAGCCCTCTCTTATTCCCCATCTTTCTGCCAACCTGCCTCTT
CCTCCTCCAATTCCAGCACAGCCCCCAGTCATCGTCCCGTCTCCTCCTAC
CCTCCCAACCCTAACAATGGTGACGACGACGAGGAAGTAGAAGGCATCTT
ATCTCGTGCTCTTGGCCCGTTGGGAGGGGAGATAACATTAAGTGGTGCCT
TGGGGTTTGGTGCCGGGTACTCTCTGAAGAAAATAAGCAAGGCGGCCGCA
TTTTTCATTGGAATTGCGTTTGTGGCATCGCAAATATTTGGTCATTTGGG
GTATGTGGAGGTAAATTGGCGGAAGGTTGAGAGGGAGGTAATGCGGTTAT
TCGATTTGGATGGCGATCAGAGATTGACGACAAGGGACGTGGCGATGTAT
TGGAAAAAGTTGAAGGGGATGTTGATGCATAAGCTACCAAACACGACGGC
GTTCGCGGCATTTTTTACCTTAGGGCTGCAGAAGGGTTAGGGTCTGGAAT
ATGAAGGGAGGGGCGGGAGGGAG
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Coding sequence (CDS) from alignment at chr18:281701..282523+

>NO18G00690.1 ID=NO18G00690.1|Name=NO18G00690.1|organism=Nannochloropsis oceanica|type=CDS|length=678bp|location=Sequence derived from alignment at chr18:281701..282523+ (Nannochloropsis oceanica)
ATGATCGAGAGCCTGCTTCGAGCTCGCCCTCAAAACCGGACCAGCACCAC
AGCCTTTATCAATCGTTTTATCGCCCTACCACAACAAAGCTGCCCTGGCG
CCCTAAGTATAGCGACCACAACCACACTGACATTCAAGCGCGGCTCGCGG
CTTCTAGCAATATGTACTTTTATCGCGGCTGCTAATCAAGACCTCAAAGC
CCTCTCTTATTCCCCATCTTTCTGCCAACCTGCCTCTTCCTCCTCCAATT
CCAGCACAGCCCCCAGTCATCGTCCCGTCTCCTCCTACCCTCCCAACCCT
AACAATGGTGACGACGACGAGGAAGTAGAAGGCATCTTATCTCGTGCTCT
TGGCCCGTTGGGAGGGGAGATAACATTAAGTGGTGCCTTGGGGTTTGGTG
CCGGGTACTCTCTGAAGAAAATAAGCAAGGCGGCCGCATTTTTCATTGGA
ATTGCGTTTGTGGCATCGCAAATATTTGGTCATTTGGGGTATGTGGAGGT
AAATTGGCGGAAGGTTGAGAGGGAGGTAATGCGGTTATTCGATTTGGATG
GCGATCAGAGATTGACGACAAGGGACGTGGCGATGTATTGGAAAAAGTTG
AAGGGGATGTTGATGCATAAGCTACCAAACACGACGGCGTTCGCGGCATT
TTTTACCTTAGGGCTGCAGAAGGGTTAG
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Synonyms
Publications