Alignments
The following features are aligned
Aligned Feature Feature Type Alignment Location
chr18 genome chr18:249180..252790 +
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO18G00590.1 vs.
Match: CBJ48354.1 (conserved unknown protein [Ectocarpus siliculosus])
HSP 1 Score: 113.6 bits (283), Expect = 1.900e-21
Identity = 81/265 (30.57%), Postives = 116/265 (43.77%), Query Frame = 0
Query: 246 ALCYPEGTRARGCQELIQAPPPPSSSSSS-------SSSSSSSSYAAGGVVGLPCTSLGGHCPYVHFTCSKGHSWKAEAGTPACFYCPRCREATRSVRGWATGSTSSLPPLLRRRRPRTRTLPLESASRFREVVGKKGGVVLGAYIGAKRKVRLKCPRAHEWEATPDNIL-RGSWCPTCAKGTRKEKQTLSVSDMQALATAAGGEGATFLSPTYRGSSIPHLWMCGGGEGGREGGKEGGHVFEKTPNYVRKGLVIGR--AFCREC 501
A C P+ R +GC L+ PP + + + + LPC G CP F CSKGH W+ GTP CFYCP C + + R ++R+R LE+ GK G + Y+G K+ +C HEW +P N++ + +WCP CA E++ L+++DM A GG FLSP Y+G+++ H W C + GH F TPN VR+ R FC+ C
Sbjct: 23 ASCMPKNQRPQGCGPLL---PPIGTGGKQVVVVDHVAPELDKIRHLSEYKSDLPCVQTGT-CPVPVFRCSKGHVWEPN-GTPVCFYCPICADTRITTR-------------MKRKRD------LEAMQEIAR--GKGGECIAEEYLGIDEKIAFRCGDGHEWLTSPSNLVYKNTWCPKCAALRSVERKKLTLADMHQTARQFGG---VFLSPEYKGAAVKHEWRC-----------KRGHTFWNTPNNVRRAEGGRRVATFCKIC 247
The following BLAST results are available for this feature:
BLAST of NO18G00590.1 vs.
Analysis Date: 2017-10-25 (
Homology annotation for N. oceanica IMET1 )
Total hits: 1
200 400 600 800 1000 1200 1400 1600 1800 2000 Expect = 1.90e-21 / Id = 30.57 Sequence CBJ48354.1
Match Name E-value Identity Description
CBJ48354.1 1.900e-21 30.57 conserved unknown protein [Ectocarpus siliculosus] [more]
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Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence
>NO18G00590.1 ID=NO18G00590.1|Name=NO18G00590.1|organism=Nannochloropsis oceanica|type=mRNA|length=2171bp back to top protein sequence of NO18G00590.1
>NO18G00590.1-protein ID=NO18G00590.1-protein|Name=NO18G00590.1|organism=Nannochloropsis oceanica|type=polypeptide|length=537bp back to top mRNA from alignment at chr18:249180..252790+
Legend: polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO18G00590.1 ID=NO18G00590.1|Name=NO18G00590.1|organism=Nannochloropsis oceanica|type=mRNA|length=3611bp|location=Sequence derived from alignment at chr18:249180..252790+ (Nannochloropsis oceanica)ATGGACATGGAAAATGACAGGGAGAACAGAGGCAGCAGCA
GCAGCAGCAGCAGCAGCAGCATCAGCAGTAGCAGCAGTAGCAGCAGCAGC
AGTAGCAGCAGCAGCAGCTTCACAGTAACGAGGACTAGAAAAACGAGCCG
TGTCCGGAGTTGGACACCGTTCCTATCCACTTCCCCTCTCACCCTTCCAG
CACCAACATCATCACCTCCAGCACCAAGAAAAAGGGCGACACGCATCATG
AGCAGAGAGACGCAGACGACACAGACAATAATTACCATGACCCAACGAGA
CAGAA GTAAAAGCAGAAGACGACTTCGAACAAGGGCCGTCGACTGTAGCC
ACCCTCCATATTTCCTCCTCCTCCTCTTCCTCCTCTCCCTTCCCCCCTCC
CCAACCATCACCGAGGCCTTTGTCTTTCCCTCTGCAATTCGCACCATCTT
TCCTCACCACTCCTTCCCCCGTATCCTTCTCTGTGCCTCCTCCTCCTCTT
CTCCCTCCACTCCCTCCTCTCCCTCCCCAGACAACGGGGAAGGGGGGGAT
GGGGGGGAGGGGGCCGCCGCAGCACCATCATCATCGTCAGCAACAGCATC
AGAAAGGGTCATGCATCGGAGAAGACGGCGTTTGGAGATGGAGGAGGAGG
TGAAGGACGGAGGGGACGGCCTCTTTTTTGGGAATTTGACGAGAATGGAG
CTGATGGGATGG GTGAGGCGAGGGAGGGAGGGAGGGAGGGAGAAGGGGAG
GGAGGGAGGCTTAGAAAAGAGGCATTGTGTGTGTACGCTTTAGTGTGACG
CAATCCCTGATCCCTCCCTTCCTCCTTCCCTCCCTCCCTCCCTCTTTGAT
CTGATTGCTGCCTGTCTGTAACATGTGTGTGTCATTTCTATGACACCCCT
CCCCCCCTCATTCCCTTCCTCCCTCCCTCCCTCAGGACACCTTGGAACCG
GAAGAGGAAGGCTACCGACGCCTCGGCCTGACTGCGCCCGATGTCACGCC
AGAG GTGAGGAGGGGAGGGAGGGAGGAAGGAGGGGAAGGAGAGAGGGAGA
GAGAAAGGGAACAGGTGGAAGAGGAAAAGAGGACGTCAATCCATGGGCAG
AGTTTAACTCTTATTACTCCTTCCCTCCTTTCCTATCTTCGTCCTTCCCT
TCCCAAGGATTTTCGTGACCTGAAGGTCCGCCTCCGCTTCGGCTTCGAAT
CCTCCTCCCCCTCCCCCTCCTCCTCCTTCGTCAACCCTCCCTCTTCCTCT
TCCTCCTCCCCCTCCTCCTCCTCTTCCTTGTCACAAGGGGTAAGGACAGA
CACCAAGAAACGCGAGACAGTCATGGTGGAATTCACGACCCCTTACGCCC
TATGCTACCCGGAAG GTTCGTTCAAGCCCTCCATCCCTCCCTCCCTTGCG
TTCTTCCCCCATCATTCCATCTTTCTTCGCGCAACTTTTTGTGAGAGGGA
CTATGGCCTCTTCCCAACACCCGCCCTTACATTCTCCGTCCTTCCCTCCT
TCCCTCCCGCCCTCCCGCCCTCCCTCCCTCTCTCCCTCCCTCCCTTCCTT
CCTTCCCCTTCATCCAGGGACCCGCGCCCGTGGCTGCCAAGAGCTCATCC
AAGCGCCCCCGCCCCCCTCCTCCTCCTCGTCCTCCTCCTCCTCCTCCTCC
TCCTCCTCCTACGCTGCTGGAGGGGTCGTCGGCCTGCCTTGTACCTCCCT
GGGAGGACACTGTCCATACGTGCATTTTACCTGTTCTAAAGGCCATTCCT
GGAAGGCGGAGGCCGGCACTCCCGCGTGCTTCTACTGCCCGCGTTGCCGT
GAAGCGACGAGGAGCGTACGAG GTACCCTACCCTCCCTCCCGCCATTCTT
TCGATCCTGTCGATCCTTGCGGCTAATTCCCTTCGGCTTTTTCCTCTTCT
CGTCTTGGTGCACTGCCCTCCCATCCCTCCCTCCCTCCCTCCCTCCCTCC
CTTCCACTCACCTATCTTCCCTCCCTCTCGCCCTCCCCCCCGCTCTCCCA
CTCACCCTCCCTCCCTCTCTCCCTCCCTACCTCCCTTCTACTCACCCATC
CTCCCTCACGCCGTTACCCGTCTCTCCTCAAAACCCTCCCTCCCTCCCTC
CATCCCTCCCTTACTCCCTCAGGCTGGGCCACTGGATCGACCTCCTCCCT
TCCCCCCCTCCTCCGTCGTCGACGCCCTCGCACCCGCACTCTCCCCTTGG
AATCTGCCTCTCGCTTTAGGGAGGTAGTGGGGAAGAAGGGAGGGGTTGTC
CTGGGG GTAAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGC
TGGAGGGGTTGCGTCCATCGGGCCTGTGGGAAATCCACCCGTATTTTCTT
CTGTCTCCCTCAGTCCCCTCTCTCGCGCCCACCCTTCCTCCCTTCCTCCC
TCCCTCCCTCTAGGCTTACATTGGTGCCAAACGCAAGGTCCGGCTTAAGT
GCCCCCGGGCGCATGAATGGGAGGCCACGCCCGATAACATACTGAGGGGT
AGCTG GTAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGG
GAGGGAGGGAATGAAAGAAAGTAAATGAAAGAAAAAACACAACTCAACGA
TCCTTTACCTTTTTCCCTCCCTCTTCCGTCCCTCCCTCCCTCCCTCCCTC
CCTCCCTCCCTCCCTCCCTCCCTCCCTTCCCCAAGGTGCCCGACCTGTGC
AAAAGGCACGCGCAAGGAAAAGCAGACATTAAGCGTAAGTGACATGCAGG
CGTTGGCAACGGCAGCAGGAGGGGAAGGAGCGACCTTTCTCTCGCCTACC
TACAGAGGAAGTAGCATTCCCCACCTGTGGATGTGTGGAGGAGGTGAGGG
AGGGAGAGAGGGAGGGAAGGAGGGAGGGCATGTGTTTGAAAAGACGCCTA
ATTACGTGAGGAAGGGATTAGTGATAGGGAGGGCTTTCTGCAGGGAATGT
GAGCGGGAGAAGAAGAAGAAGAACAACAACAAGAAGAAGAAGGAAGAGGG
TGAAGGAGGGAAGGAGAGGAGGGAGGGAGGGAAGGACGGCGGGAGGGCAA
AACGTGTATAG back to top Coding sequence (CDS) from alignment at chr18:249180..252790+
>NO18G00590.1 ID=NO18G00590.1|Name=NO18G00590.1|organism=Nannochloropsis oceanica|type=CDS|length=1611bp|location=Sequence derived from alignment at chr18:249180..252790+ (Nannochloropsis oceanica) back to top