NO18G00590.1, NO18G00590.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO18G00590.1
Unique Name	NO18G00590.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2171
Alignment location	chr18:249180..252790 +

Link to JBrowse

Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr18	genome	chr18:249180..252790 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

[Close]

BLAST of NO18G00590.1 vs.
Match: CBJ48354.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 113.6 bits (283), Expect = 1.900e-21
Identity = 81/265 (30.57%), Postives = 116/265 (43.77%), Query Frame = 0

Query:  246 ALCYPEGTRARGCQELIQAPPPPSSSSSS-------SSSSSSSSYAAGGVVGLPCTSLGGHCPYVHFTCSKGHSWKAEAGTPACFYCPRCREATRSVRGWATGSTSSLPPLLRRRRPRTRTLPLESASRFREVVGKKGGVVLGAYIGAKRKVRLKCPRAHEWEATPDNIL-RGSWCPTCAKGTRKEKQTLSVSDMQALATAAGGEGATFLSPTYRGSSIPHLWMCGGGEGGREGGKEGGHVFEKTPNYVRKGLVIGR--AFCREC 501
            A C P+  R +GC  L+   PP  +           +       + +     LPC   G  CP   F CSKGH W+   GTP CFYCP C +   + R             ++R+R       LE+        GK G  +   Y+G   K+  +C   HEW  +P N++ + +WCP CA     E++ L+++DM   A   GG    FLSP Y+G+++ H W C           + GH F  TPN VR+     R   FC+ C
Sbjct:   23 ASCMPKNQRPQGCGPLL---PPIGTGGKQVVVVDHVAPELDKIRHLSEYKSDLPCVQTGT-CPVPVFRCSKGHVWEPN-GTPVCFYCPICADTRITTR-------------MKRKRD------LEAMQEIAR--GKGGECIAEEYLGIDEKIAFRCGDGHEWLTSPSNLVYKNTWCPKCAALRSVERKKLTLADMHQTARQFGG---VFLSPEYKGAAVKHEWRC-----------KRGHTFWNTPNNVRRAEGGRRVATFCKIC 247

The following BLAST results are available for this feature:

BLAST of NO18G00590.1 vs.

BLAST of NO18G00590.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
CBJ48354.1	1.900e-21	30.57	conserved unknown protein [Ectocarpus siliculosus]	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO18G00590	NO18G00590	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO18G00590.1	NO18G00590.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO18G00590.1.cds1	NO18G00590.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO18G00590.1.cds2	NO18G00590.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO18G00590.1.cds3	NO18G00590.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO18G00590.1.cds4	NO18G00590.1.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO18G00590.1.cds5	NO18G00590.1.cds5	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO18G00590.1.cds6	NO18G00590.1.cds6	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO18G00590.1.cds7	NO18G00590.1.cds7	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO18G00590.1.cds8	NO18G00590.1.cds8	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr18:249180..252790+
coding sequence from alignment at chr18:249180..252790+

mRNA sequence

>NO18G00590.1 ID=NO18G00590.1|Name=NO18G00590.1|organism=Nannochloropsis oceanica|type=mRNA|length=2171bp
CTCGTATGCAAGTCCTAGAGGACGTCAGATTGCATGCGATAGTTCTACAG
GAGTGTAGGAAGGGCAGGAAAACGAACTACATGTACCATGAAACAGAACA
CATGGACGTAGGCTCTTGGAGATGGGACATCTATATTTCTATCATGTAAG
CTTTTTCTCTCTTGGTTCACACACGTCTTCATTTGGTTACGGCTTCCGGT
CAAGTTTCGTCTACGACATTTCTGTCCTTTGGAAATATGCATTCATTGTG
GGAGAAAGACGCCATGTCCATTGTTCATGCATGATTCATCACATGCTGTC
TTTGTGGAGCTGCTTCCTCGTTCGCTGCTTAATCATTTGTTATGTTGCTG
TTGAGGTTGCCTCTTACCACTGCTTCTCCCTTTTATATTCGTACCACCAC
AACACCCAGGCATGTCAAGGCAGCTTTGGCTTCGGTCGTGATGGGGGAAG
CATGAAAGGTGGCAGGAAAGATACATGTAACTGCAGTCTCGTCGCAGGGT
AATTCCGCCTCCATCCTCCCTCCCTCCTTCCCACCCAAGGCTGCTCTCTG
CTCCTACAGCATGGACATGGAAAATGACAGGGAGAACAGAGGCAGCAGCA
GCAGCAGCAGCAGCAGCAGCATCAGCAGTAGCAGCAGTAGCAGCAGCAGC
AGTAGCAGCAGCAGCAGCTTCACAGTAACGAGGACTAGAAAAACGAGCCG
TGTCCGGAGTTGGACACCGTTCCTATCCACTTCCCCTCTCACCCTTCCAG
CACCAACATCATCACCTCCAGCACCAAGAAAAAGGGCGACACGCATCATG
AGCAGAGAGACGCAGACGACACAGACAATAATTACCATGACCCAACGAGA
CAGAAACAACGGGGAAGGGGGGGATGGGGGGGAGGGGGCCGCCGCAGCAC
CATCATCATCGTCAGCAACAGCATCAGAAAGGGTCATGCATCGGAGAAGA
CGGCGTTTGGAGATGGAGGAGGAGGTGAAGGACGGAGGGGACGGCCTCTT
TTTTGGGAATTTGACGAGAATGGAGCTGATGGGATGGGACACCTTGGAAC
CGGAAGAGGAAGGCTACCGACGCCTCGGCCTGACTGCGCCCGATGTCACG
CCAGAGGATTTTCGTGACCTGAAGGTCCGCCTCCGCTTCGGCTTCGAATC
CTCCTCCCCCTCCCCCTCCTCCTCCTTCGTCAACCCTCCCTCTTCCTCTT
CCTCCTCCCCCTCCTCCTCCTCTTCCTTGTCACAAGGGGTAAGGACAGAC
ACCAAGAAACGCGAGACAGTCATGGTGGAATTCACGACCCCTTACGCCCT
ATGCTACCCGGAAGGGACCCGCGCCCGTGGCTGCCAAGAGCTCATCCAAG
CGCCCCCGCCCCCCTCCTCCTCCTCGTCCTCCTCCTCCTCCTCCTCCTCC
TCCTCCTACGCTGCTGGAGGGGTCGTCGGCCTGCCTTGTACCTCCCTGGG
AGGACACTGTCCATACGTGCATTTTACCTGTTCTAAAGGCCATTCCTGGA
AGGCGGAGGCCGGCACTCCCGCGTGCTTCTACTGCCCGCGTTGCCGTGAA
GCGACGAGGAGCGTACGAGGCTGGGCCACTGGATCGACCTCCTCCCTTCC
CCCCCTCCTCCGTCGTCGACGCCCTCGCACCCGCACTCTCCCCTTGGAAT
CTGCCTCTCGCTTTAGGGAGGTAGTGGGGAAGAAGGGAGGGGTTGTCCTG
GGGGCTTACATTGGTGCCAAACGCAAGGTCCGGCTTAAGTGCCCCCGGGC
GCATGAATGGGAGGCCACGCCCGATAACATACTGAGGGGTAGCTGGTGCC
CGACCTGTGCAAAAGGCACGCGCAAGGAAAAGCAGACATTAAGCGTAAGT
GACATGCAGGCGTTGGCAACGGCAGCAGGAGGGGAAGGAGCGACCTTTCT
CTCGCCTACCTACAGAGGAAGTAGCATTCCCCACCTGTGGATGTGTGGAG
GAGGTGAGGGAGGGAGAGAGGGAGGGAAGGAGGGAGGGCATGTGTTTGAA
AAGACGCCTAATTACGTGAGGAAGGGATTAGTGATAGGGAGGGCTTTCTG
CAGGGAATGTGAGCGGGAGAAGAAGAAGAAGAACAACAACAAGAAGAAGA
AGGAAGAGGGTGAAGGAGGGAAGGAGAGGAGGGAGGGAGGGAAGGACGGC
GGGAGGGCAAAACGTGTATAG

protein sequence of NO18G00590.1

>NO18G00590.1-protein ID=NO18G00590.1-protein|Name=NO18G00590.1|organism=Nannochloropsis oceanica|type=polypeptide|length=537bp
MDMENDRENRGSSSSSSSSSISSSSSSSSSSSSSSSFTVTRTRKTSRVRS
WTPFLSTSPLTLPAPTSSPPAPRKRATRIMSRETQTTQTIITMTQRDRNN
GEGGDGGEGAAAAPSSSSATASERVMHRRRRRLEMEEEVKDGGDGLFFGN
LTRMELMGWDTLEPEEEGYRRLGLTAPDVTPEDFRDLKVRLRFGFESSSP
SPSSSFVNPPSSSSSSPSSSSSLSQGVRTDTKKRETVMVEFTTPYALCYP
EGTRARGCQELIQAPPPPSSSSSSSSSSSSSSYAAGGVVGLPCTSLGGHC
PYVHFTCSKGHSWKAEAGTPACFYCPRCREATRSVRGWATGSTSSLPPLL
RRRRPRTRTLPLESASRFREVVGKKGGVVLGAYIGAKRKVRLKCPRAHEW
EATPDNILRGSWCPTCAKGTRKEKQTLSVSDMQALATAAGGEGATFLSPT
YRGSSIPHLWMCGGGEGGREGGKEGGHVFEKTPNYVRKGLVIGRAFCREC
EREKKKKNNNKKKKEEGEGGKERREGGKDGGRAKRV*

mRNA from alignment at chr18:249180..252790+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO18G00590.1 ID=NO18G00590.1|Name=NO18G00590.1|organism=Nannochloropsis oceanica|type=mRNA|length=3611bp|location=Sequence derived from alignment at chr18:249180..252790+ (Nannochloropsis oceanica)
CTCGTATGCAAGTCCTAGAGGACGTCAGATTGCATGCGATAGTTCTACAG
GAGTGTAGGAAGGGCAGGAAAACGAACTACATGTACCATGAAACAGAACA
CATGGACGTAGGCTCTTGGAGATGGGACATCTATATTTCTATCATGTAAG
CTTTTTCTCTCTTGGTTCACACACGTCTTCATTTGGTTACGGCTTCCGGT
CAAGTTTCGTCTACGACATTTCTGTCCTTTGGAAATATGCATTCATTGTG
GGAGAAAGACGCCATGTCCATTGTTCATGCATGATTCATCACATGCTGTC
TTTGTGGAGCTGCTTCCTCGTTCGCTGCTTAATCATTTGTTATGTTGCTG
TTGAGGTTGCCTCTTACCACTGCTTCTCCCTTTTATATTCGTACCACCAC
AACACCCAGGCATGTCAAGGCAGCTTTGGCTTCGGTCGTGATGGGGGAAG
CATGAAAGGTGGCAGGAAAGATACATGTAACTGCAGTCTCGTCGCAGGGT
AATTCCGCCTCCATCCTCCCTCCCTCCTTCCCACCCAAGGCTGCTCTCTG
CTCCTACAGCATGGACATGGAAAATGACAGGGAGAACAGAGGCAGCAGCA
GCAGCAGCAGCAGCAGCAGCATCAGCAGTAGCAGCAGTAGCAGCAGCAGC
AGTAGCAGCAGCAGCAGCTTCACAGTAACGAGGACTAGAAAAACGAGCCG
TGTCCGGAGTTGGACACCGTTCCTATCCACTTCCCCTCTCACCCTTCCAG
CACCAACATCATCACCTCCAGCACCAAGAAAAAGGGCGACACGCATCATG
AGCAGAGAGACGCAGACGACACAGACAATAATTACCATGACCCAACGAGA
CAGAAGTAAAAGCAGAAGACGACTTCGAACAAGGGCCGTCGACTGTAGCC
ACCCTCCATATTTCCTCCTCCTCCTCTTCCTCCTCTCCCTTCCCCCCTCC
CCAACCATCACCGAGGCCTTTGTCTTTCCCTCTGCAATTCGCACCATCTT
TCCTCACCACTCCTTCCCCCGTATCCTTCTCTGTGCCTCCTCCTCCTCTT
CTCCCTCCACTCCCTCCTCTCCCTCCCCAGACAACGGGGAAGGGGGGGAT
GGGGGGGAGGGGGCCGCCGCAGCACCATCATCATCGTCAGCAACAGCATC
AGAAAGGGTCATGCATCGGAGAAGACGGCGTTTGGAGATGGAGGAGGAGG
TGAAGGACGGAGGGGACGGCCTCTTTTTTGGGAATTTGACGAGAATGGAG
CTGATGGGATGGGTGAGGCGAGGGAGGGAGGGAGGGAGGGAGAAGGGGAG
GGAGGGAGGCTTAGAAAAGAGGCATTGTGTGTGTACGCTTTAGTGTGACG
CAATCCCTGATCCCTCCCTTCCTCCTTCCCTCCCTCCCTCCCTCTTTGAT
CTGATTGCTGCCTGTCTGTAACATGTGTGTGTCATTTCTATGACACCCCT
CCCCCCCTCATTCCCTTCCTCCCTCCCTCCCTCAGGACACCTTGGAACCG
GAAGAGGAAGGCTACCGACGCCTCGGCCTGACTGCGCCCGATGTCACGCC
AGAGGTGAGGAGGGGAGGGAGGGAGGAAGGAGGGGAAGGAGAGAGGGAGA
GAGAAAGGGAACAGGTGGAAGAGGAAAAGAGGACGTCAATCCATGGGCAG
AGTTTAACTCTTATTACTCCTTCCCTCCTTTCCTATCTTCGTCCTTCCCT
TCCCAAGGATTTTCGTGACCTGAAGGTCCGCCTCCGCTTCGGCTTCGAAT
CCTCCTCCCCCTCCCCCTCCTCCTCCTTCGTCAACCCTCCCTCTTCCTCT
TCCTCCTCCCCCTCCTCCTCCTCTTCCTTGTCACAAGGGGTAAGGACAGA
CACCAAGAAACGCGAGACAGTCATGGTGGAATTCACGACCCCTTACGCCC
TATGCTACCCGGAAGGTTCGTTCAAGCCCTCCATCCCTCCCTCCCTTGCG
TTCTTCCCCCATCATTCCATCTTTCTTCGCGCAACTTTTTGTGAGAGGGA
CTATGGCCTCTTCCCAACACCCGCCCTTACATTCTCCGTCCTTCCCTCCT
TCCCTCCCGCCCTCCCGCCCTCCCTCCCTCTCTCCCTCCCTCCCTTCCTT
CCTTCCCCTTCATCCAGGGACCCGCGCCCGTGGCTGCCAAGAGCTCATCC
AAGCGCCCCCGCCCCCCTCCTCCTCCTCGTCCTCCTCCTCCTCCTCCTCC
TCCTCCTCCTACGCTGCTGGAGGGGTCGTCGGCCTGCCTTGTACCTCCCT
GGGAGGACACTGTCCATACGTGCATTTTACCTGTTCTAAAGGCCATTCCT
GGAAGGCGGAGGCCGGCACTCCCGCGTGCTTCTACTGCCCGCGTTGCCGT
GAAGCGACGAGGAGCGTACGAGGTACCCTACCCTCCCTCCCGCCATTCTT
TCGATCCTGTCGATCCTTGCGGCTAATTCCCTTCGGCTTTTTCCTCTTCT
CGTCTTGGTGCACTGCCCTCCCATCCCTCCCTCCCTCCCTCCCTCCCTCC
CTTCCACTCACCTATCTTCCCTCCCTCTCGCCCTCCCCCCCGCTCTCCCA
CTCACCCTCCCTCCCTCTCTCCCTCCCTACCTCCCTTCTACTCACCCATC
CTCCCTCACGCCGTTACCCGTCTCTCCTCAAAACCCTCCCTCCCTCCCTC
CATCCCTCCCTTACTCCCTCAGGCTGGGCCACTGGATCGACCTCCTCCCT
TCCCCCCCTCCTCCGTCGTCGACGCCCTCGCACCCGCACTCTCCCCTTGG
AATCTGCCTCTCGCTTTAGGGAGGTAGTGGGGAAGAAGGGAGGGGTTGTC
CTGGGGGTAAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGC
TGGAGGGGTTGCGTCCATCGGGCCTGTGGGAAATCCACCCGTATTTTCTT
CTGTCTCCCTCAGTCCCCTCTCTCGCGCCCACCCTTCCTCCCTTCCTCCC
TCCCTCCCTCTAGGCTTACATTGGTGCCAAACGCAAGGTCCGGCTTAAGT
GCCCCCGGGCGCATGAATGGGAGGCCACGCCCGATAACATACTGAGGGGT
AGCTGGTAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGG
GAGGGAGGGAATGAAAGAAAGTAAATGAAAGAAAAAACACAACTCAACGA
TCCTTTACCTTTTTCCCTCCCTCTTCCGTCCCTCCCTCCCTCCCTCCCTC
CCTCCCTCCCTCCCTCCCTCCCTCCCTTCCCCAAGGTGCCCGACCTGTGC
AAAAGGCACGCGCAAGGAAAAGCAGACATTAAGCGTAAGTGACATGCAGG
CGTTGGCAACGGCAGCAGGAGGGGAAGGAGCGACCTTTCTCTCGCCTACC
TACAGAGGAAGTAGCATTCCCCACCTGTGGATGTGTGGAGGAGGTGAGGG
AGGGAGAGAGGGAGGGAAGGAGGGAGGGCATGTGTTTGAAAAGACGCCTA
ATTACGTGAGGAAGGGATTAGTGATAGGGAGGGCTTTCTGCAGGGAATGT
GAGCGGGAGAAGAAGAAGAAGAACAACAACAAGAAGAAGAAGGAAGAGGG
TGAAGGAGGGAAGGAGAGGAGGGAGGGAGGGAAGGACGGCGGGAGGGCAA
AACGTGTATAG

Coding sequence (CDS) from alignment at chr18:249180..252790+

>NO18G00590.1 ID=NO18G00590.1|Name=NO18G00590.1|organism=Nannochloropsis oceanica|type=CDS|length=1611bp|location=Sequence derived from alignment at chr18:249180..252790+ (Nannochloropsis oceanica)
ATGGACATGGAAAATGACAGGGAGAACAGAGGCAGCAGCAGCAGCAGCAG
CAGCAGCAGCATCAGCAGTAGCAGCAGTAGCAGCAGCAGCAGTAGCAGCA
GCAGCAGCTTCACAGTAACGAGGACTAGAAAAACGAGCCGTGTCCGGAGT
TGGACACCGTTCCTATCCACTTCCCCTCTCACCCTTCCAGCACCAACATC
ATCACCTCCAGCACCAAGAAAAAGGGCGACACGCATCATGAGCAGAGAGA
CGCAGACGACACAGACAATAATTACCATGACCCAACGAGACAGAAACAAC
GGGGAAGGGGGGGATGGGGGGGAGGGGGCCGCCGCAGCACCATCATCATC
GTCAGCAACAGCATCAGAAAGGGTCATGCATCGGAGAAGACGGCGTTTGG
AGATGGAGGAGGAGGTGAAGGACGGAGGGGACGGCCTCTTTTTTGGGAAT
TTGACGAGAATGGAGCTGATGGGATGGGACACCTTGGAACCGGAAGAGGA
AGGCTACCGACGCCTCGGCCTGACTGCGCCCGATGTCACGCCAGAGGATT
TTCGTGACCTGAAGGTCCGCCTCCGCTTCGGCTTCGAATCCTCCTCCCCC
TCCCCCTCCTCCTCCTTCGTCAACCCTCCCTCTTCCTCTTCCTCCTCCCC
CTCCTCCTCCTCTTCCTTGTCACAAGGGGTAAGGACAGACACCAAGAAAC
GCGAGACAGTCATGGTGGAATTCACGACCCCTTACGCCCTATGCTACCCG
GAAGGGACCCGCGCCCGTGGCTGCCAAGAGCTCATCCAAGCGCCCCCGCC
CCCCTCCTCCTCCTCGTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTACG
CTGCTGGAGGGGTCGTCGGCCTGCCTTGTACCTCCCTGGGAGGACACTGT
CCATACGTGCATTTTACCTGTTCTAAAGGCCATTCCTGGAAGGCGGAGGC
CGGCACTCCCGCGTGCTTCTACTGCCCGCGTTGCCGTGAAGCGACGAGGA
GCGTACGAGGCTGGGCCACTGGATCGACCTCCTCCCTTCCCCCCCTCCTC
CGTCGTCGACGCCCTCGCACCCGCACTCTCCCCTTGGAATCTGCCTCTCG
CTTTAGGGAGGTAGTGGGGAAGAAGGGAGGGGTTGTCCTGGGGGCTTACA
TTGGTGCCAAACGCAAGGTCCGGCTTAAGTGCCCCCGGGCGCATGAATGG
GAGGCCACGCCCGATAACATACTGAGGGGTAGCTGGTGCCCGACCTGTGC
AAAAGGCACGCGCAAGGAAAAGCAGACATTAAGCGTAAGTGACATGCAGG
CGTTGGCAACGGCAGCAGGAGGGGAAGGAGCGACCTTTCTCTCGCCTACC
TACAGAGGAAGTAGCATTCCCCACCTGTGGATGTGTGGAGGAGGTGAGGG
AGGGAGAGAGGGAGGGAAGGAGGGAGGGCATGTGTTTGAAAAGACGCCTA
ATTACGTGAGGAAGGGATTAGTGATAGGGAGGGCTTTCTGCAGGGAATGT
GAGCGGGAGAAGAAGAAGAAGAACAACAACAAGAAGAAGAAGGAAGAGGG
TGAAGGAGGGAAGGAGAGGAGGGAGGGAGGGAAGGACGGCGGGAGGGCAA
AACGTGTATAG

Synonyms

Publications