NO18G00440.1, NO18G00440.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO18G00440.1
Unique NameNO18G00440.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2193
Alignment locationchr18:183266..186781 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr18genomechr18:183266..186781 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO18G00440.1 vs.
Match: WP_083457314.1 (endonuclease III [Sandaracinus amylolyticus]; AKF05148.1 Endonuclease III [Sandaracinus amylolyticus])

HSP 1 Score: 253.1 bits (645), Expect = 1.900e-63
Identity = 135/255 (52.94%), Postives = 163/255 (63.92%), Query Frame = 0 
Query:   48 KAQAIHRLLDQLYPNPPIPLDHFDNYSLLIAVILSAQTTDGKVNEVTPGLFKVAPTPAHLAALPHATVLSLIRSVGLAPGKAKNIIGAAKMLVDTFGGQCLLVLLIPISYPGPPFIVSLHVPSTFEELESLPGVGHKTASVLMSQAFNYPAFPVDTHVHRCALRWGLCKETQDVKKVEAALKSLFPRDAWSRIGLQIIYFGREHCPAKKHVSSACPICCW----------VKGGKSKGAPPPSLPLTSSGKGGGK 293
            KA  I  +L++LYP+PPIPLDH D ++LL+AV+LSAQTTD KVNEVTP LF  APTP  +AAL  A +L+ IR VGL+P KAK + G A  +    GGQ                     VP TFEELE+LPGVGHKTASV+M QAF +PAFPVDTH+HR A RWGL  +   V++ EA LK LF R  W ++ LQIIYFGREHCPA +H  SACPIC W           KGG +KG       ++  G+ GGK
Sbjct:   11 KAARILEILERLYPSPPIPLDHVDAFTLLVAVVLSAQTTDKKVNEVTPALFAAAPTPEAMAALSEAEILAYIRQVGLSPQKAKALKGLATKIATEHGGQ---------------------VPRTFEELEALPGVGHKTASVVMIQAFGHPAFPVDTHIHRLAWRWGL-SDGSSVERTEADLKRLFDRSKWDKLHLQIIYFGREHCPALRHDLSACPICSWAAPAKVRAAEAKGGATKG-------MSKGGRPGGK 236
The following BLAST results are available for this feature:
BLAST of NO18G00440.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
WP_083457314.11.900e-6352.94endonuclease III [Sandaracinus amylolyticus]; AKF0... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO18G00440NO18G00440Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO18G00440.1NO18G00440.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO18G00440.1.cds1NO18G00440.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO18G00440.1.cds2NO18G00440.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO18G00440.1.cds3NO18G00440.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO18G00440.1.cds4NO18G00440.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO18G00440.1.cds5NO18G00440.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO18G00440.1.cds6NO18G00440.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO18G00440.1.cds7NO18G00440.1.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO18G00440.1 ID=NO18G00440.1|Name=NO18G00440.1|organism=Nannochloropsis oceanica|type=mRNA|length=2193bp
CTGCTATTGGGTTTAGGGGAAGGGAAGAGAGAGTTACAGATGTGTGACAA
GCCCACGAAGAGAAGGTGGAAAGGTCAGGAAGGTATAGCCAAGCATGTGC
TTCTCATTCCAACTATCTAATAGGAGAATGCTTCCACACGATCGTGGGAG
AGTTGTCTTTTTGCGTGTGGGAGCGATACGAAAGCGAGCACAAAATTACC
AAACTTTTGGGGGGGTAGGAGGTAGGAGAAGCAAGATGTGCAAGCGGGGG
GCAGCAACGATAAGGGAAACTACGCGCAAGGGACGAAGCGCCGCAATTAT
TCATTGACGTTACATACCTCTCGTTGGAAGGGGAGGTGCCAGGTACTGTA
CAGGGAACGAAGCATGGGATCAAGCGAGGAGGAAAAGCATACCGACGATA
ACCGTATCGCCCGACAAGGCAGCAGCCAGAAAAAAGCAGAAGCAGAAGGC
GAGGCGGCGATGCTCTTGTATCGTCTTGGTCAGAGCATCCATGGCTAACC
TACACTCATTTTACTGCTTTCATTCGCAACAACCATTGCCAGGGGGCAGC
AGAGCCAGGGAGGATTGTCCCAAACGGACAGCATGAGGAGCAAACCTGGT
TCAAACACCACCACAGCCATGACAAAAACCAAGGCCAAACAATCCAAGGC
GACAAAGACGACGACAGTGAGCGCCAGCGCGGCCCCTGCCTCTCTTCCTC
CCCCTCCGCCCGCCCTTCTGTCCAAAGCCCAAGCCATTCACCGCCTCCTC
GATCAACTATACCCTAACCCTCCCATTCCTCTCGACCACTTCGACAACTA
CTCCTTGTTGATTGCTGTGATCCTGTCTGCGCAGACGACGGATGGAAAGG
TAAACGAAGTAACACCCGGACTGTTCAAAGTTGCCCCCACACCCGCCCAC
CTCGCGGCCCTCCCCCATGCCACCGTCCTTAGCCTCATCCGCTCCGTGGG
CCTGGCCCCGGGGAAGGCCAAAAACATCATCGGCGCGGCGAAAATGCTGG
TGGACACGTTTGGAGGACAGTGTCTATTGGTGTTGTTGATACCAATATCT
TATCCCGGTCCTCCTTTCATCGTGAGCCTGCATGTCCCTTCCACGTTCGA
GGAACTGGAGTCTCTCCCCGGGGTAGGCCATAAAACCGCCTCCGTCCTCA
TGAGCCAGGCCTTCAATTACCCTGCTTTTCCCGTCGATACGCACGTCCAT
CGGTGCGCCCTCCGGTGGGGTCTCTGCAAGGAGACGCAAGACGTCAAGAA
AGTTGAGGCTGCCCTCAAGTCTCTCTTCCCCCGGGACGCCTGGTCCCGTA
TTGGCCTTCAGATCATCTATTTTGGCCGGGAGCACTGCCCCGCGAAGAAA
CACGTGTCCAGTGCATGTCCCATCTGCTGCTGGGTCAAGGGCGGCAAAAG
CAAGGGGGCGCCGCCTCCTTCCCTCCCCCTCACGTCATCAGGAAAGGGAG
GGGGGAAGAATGACGGGAAGGAGGGAGGACTGGAGGAGTGGTTGATTCAG
TTCGAAGGCGCATCACCGGGGAAGGCAAACAAGAATATCATTCTGTACAG
CGAGCGGAGGAAGGAGGAGGAGGGAGGGAAGGAGGGCAAGGGGAGGGCGG
TCTTGGCGGATGTGATGGTGATGGAAAAGGAGGAGGAGAAAGGGAAGGAG
AGGGAGGGAAGAAAGGTTGGGGGCAAAAGGACGGCGATTGTGAAGACGGG
ATCGAAGATGGTTGTTGTCAAGAAGGAGGAGGAAGGGAAGGAGGGAGGGA
AGGAGCGATGGAGTATCAAGACGAGGAATGTGACGACAGCTTCGACGACG
GTTGTTGTCAAGAAGGAGGAGGGAAGGAAGGAGGGCGGGAAAGAGGGAGG
GAGGGTGAAAAGGGAAAAGGTGACGAGGGCGTCGAAGGTGACTGTTGTTG
AGAAGGAGGAGGGAGGAAAGGAGAGAGGGAGGATGAAGAGGGCCTTGGTT
GTTACAGTGAAAACGGAGGAGTGTGGAGAGGGGAAGGACGGAGGGAAGAA
GCGAAAGGTCGCGACACCGAGGACTGTGAGTATAAAAAGCGAGGGAGGGA
AGGAGCAACGCAAAGGGTGCGTGACACGGACACGAAGTCTCAAGTGAGGG
AGGGTAGGCATGGGTGTGGGAGGGAGGAAGGTAAGGCAAGGCAAGCAAGC
ACCACACTTGTCAGACAAGTAAAATAATAATGGAATGAAAGGA
back to top

protein sequence of NO18G00440.1

>NO18G00440.1-protein ID=NO18G00440.1-protein|Name=NO18G00440.1|organism=Nannochloropsis oceanica|type=polypeptide|length=505bp
MRSKPGSNTTTAMTKTKAKQSKATKTTTVSASAAPASLPPPPPALLSKAQ
AIHRLLDQLYPNPPIPLDHFDNYSLLIAVILSAQTTDGKVNEVTPGLFKV
APTPAHLAALPHATVLSLIRSVGLAPGKAKNIIGAAKMLVDTFGGQCLLV
LLIPISYPGPPFIVSLHVPSTFEELESLPGVGHKTASVLMSQAFNYPAFP
VDTHVHRCALRWGLCKETQDVKKVEAALKSLFPRDAWSRIGLQIIYFGRE
HCPAKKHVSSACPICCWVKGGKSKGAPPPSLPLTSSGKGGGKNDGKEGGL
EEWLIQFEGASPGKANKNIILYSERRKEEEGGKEGKGRAVLADVMVMEKE
EEKGKEREGRKVGGKRTAIVKTGSKMVVVKKEEEGKEGGKERWSIKTRNV
TTASTTVVVKKEEGRKEGGKEGGRVKREKVTRASKVTVVEKEEGGKERGR
MKRALVVTVKTEECGEGKDGGKKRKVATPRTVSIKSEGGKEQRKGCVTRT
RSLK*
back to top

mRNA from alignment at chr18:183266..186781+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO18G00440.1 ID=NO18G00440.1|Name=NO18G00440.1|organism=Nannochloropsis oceanica|type=mRNA|length=3516bp|location=Sequence derived from alignment at chr18:183266..186781+ (Nannochloropsis oceanica)
CTGCTATTGGGTTTAGGGGAAGGGAAGAGAGAGTTACAGATGTGTGACAA
GCCCACGAAGAGAAGGTGGAAAGGTCAGGAAGGTATAGCCAAGCATGTGC
TTCTCATTCCAACTATCTAATAGGAGAATGCTTCCACACGATCGTGGGAG
AGTTGTCTTTTTGCGTGTGGGAGCGATACGAAAGCGAGCACAAAATTACC
AAACTTTTGGGGGGGTAGGAGGTAGGAGAAGCAAGATGTGCAAGCGGGGG
GCAGCAACGATAAGGGAAACTACGCGCAAGGGACGAAGCGCCGCAATTAT
TCATTGACGTTACATACCTCTCGTTGGAAGGGGAGGTGCCAGGTACTGTA
CAGGGAACGAAGCATGGGATCAAGCGAGGAGGAAAAGCATACCGACGATA
ACCGTATCGCCCGACAAGGCAGCAGCCAGAAAAAAGCAGAAGCAGAAGGC
GAGGCGGCGATGCTCTTGTATCGTCTTGGTCAGAGCATCCATGGCTAACC
TACACTCATTTTACTGCTTTCATTCGCAACAACCATTGCCAGGGGGCAGC
AGAGCCAGGGAGGATTGTCCCAAACGGACAGCATGAGGTAAGCAAGTGCA
GCTATAGCAATACGACATGCTCCATAACCTCTTCCATACAAGCACCCACT
CCTGCCGCGACCCCACCACAAACAGCAGGAGCAAACCTGGTTCAAACACC
ACCACAGCCATGACAAAAACCAAGGCCAAACAATCCAAGGCGACAAAGAC
GACGACAGTGAGCGCCAGCGCGGCCCCTGCCTCTCTTCCTCCCCCTCCGC
CCGCCCTTCTGTCCAAAGCCCAAGCCATTCACCGCCTCCTCGATCAACTA
TACCCTAACCCTCCCATTCCTCTCGACCACTTCGACAACTACTCCTTGTT
GATTGCTGTGATCCTGTCTGCGCAGACGACGGATGGAAAGGTGCGTGCGT
GCGGATAAATCGGGAGGGAGGGAGGGAGGGAGGAAGGGAAGGAGGGAGGG
AGGGAGGGTTGCCTGCTCGAGGCACTGAGTACTGGGAGTACAGGTGACGT
GATATTCAGAGAATGCGGTGGTCGAGATTGAAAGCATTCATCCAAGGAAA
ATCTTTACCATATCTTTCCCTTCTCAGCCCTTATCGCAGCTCCCTCAGTC
CCCTCCCTCCCTTCCTCCCTTCCTCACCCTCCTTTCCCTCCCTCCTTCCA
TCCTTCCCTCCCCTCCCCTCTATCAAGGTAAACGAAGTAACACCCGGACT
GTTCAAAGTTGCCCCCACACCCGCCCACCTCGCGGCCCTCCCCCATGCCA
CCGTCCTTAGCCTCATCCGCTCCGTGGGCCTGGCCCCGGGGAAGGCCAAA
AACATCATCGGCGCGGCGAAAATGCTGGTGGACACGTTTGGAGGACAGGT
ACGCTTTTAAGTTTATGTTTCAGATTCATTTAATATGTGAGAAGTGATTC
ATCTCCCCGACTCTTTCTCTTGTTTCTCGATCCCCCCTGCCTCTCCATGA
TTCGATGTTTCACTAGTAGTATTATCACCACCAACATCATAAACCTTTTT
GATTACTCTTAGTGTCTATTGGTGTTGTTGATACCAATATCTTATCCCGG
TCCTCCTTTCATCGTGAGCCTGCATGTACGTGCCCTGCTGATCCACTCGT
CCCTCCCCCCCCCTCCCTCCCTCCCCCCCCCTCCCTCCCTCCCCCCCCCT
CCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCC
CTCCCCCAGGTCCCTTCCACGTTCGAGGAACTGGAGTCTCTCCCCGGGGT
AGGCCATAAAACCGCCTCCGTCCTCATGAGCCAGGCCTTCAATTACCCTG
CTTTTCCCGTCGATACGCACGTCCATCGGTGCGCCCTCCGGTGGGGTCTC
TGCAAGGAGACGCAAGACGTCAAGAAAGTTGAGGTAGATTGCCCTCCCTC
CCCCTCTCCTTCCTTCCCTCCTTCCTTCCCTCCTTCCCCCCCTCCCTCCC
CCCCTCCTTCCCCCCCTCCTTCCCCCCCTCCTTCCCCCCTCCTTCCCTCC
CTCCTTCCCTCCCTCCTTCCCCCCTTCCTTCTCTCCCTCCTTCTCTCCCT
CCCCCCTTCCCTCCTTCTCTCCCTACCGCCTCCTTCCCCCCCTCCCCCCT
TCCCTACTTCTCTCTCCTTCCCTCTCTCCTTCTCTCCCTCCTTCCCCGTC
CCCTCCTCCCTCCTTCTCTCTCTCCTTCCCTCCCTCCTTCCCCCCTCCTT
CCCTCCCTCCCTCCCTCCCTCCTTCCCTCTCTTTCTTCGGCCTTCCACCA
GCTTGGTCTTCTTTTCCCTCAACTCATCCTTTTGACCCTCCCTCCCTCCC
TCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCAGGCTGCCCTCAAGT
CTCTCTTCCCCCGGGACGCCTGGTCCCGTATTGGCCTTCAGATCATCTAT
TTTGGTATGCCCCTCCCTCCCTCCCTCCCTCCCTCCCTCTGTCGTTTTCC
CTTTCCCTCTTATCCTCCTCCCCTCCCTTCCTCGTGCCTTCCCTCCCTCC
TTCTCTCCCTCTCTTTCTCGCGCCACAGTTCCCACTGACTCACCAATCCT
ATCCTTGTACTCTCCCCCCTCCCTCCCTCCTTCCCCTCCTCCCTCAGGCC
GGGAGCACTGCCCCGCGAAGAAACACGTGTCCAGTGCATGTCCCATCTGC
TGCTGGGTCAAGGGCGGCAAAAGCAAGGGGGCGCCGCCTCCTTCCCTCCC
CCTCACGTCATCAGGAAAGGGAGGGGGGAAGAATGACGGGAAGGAGGGAG
GACTGGAGGAGTGGTTGATTCAGTTCGAAGGCGCATCACCGGGGAAGGCA
AACAAGAATATCATTCTGTACAGCGAGCGGAGGAAGGAGGAGGAGGGAGG
GAAGGAGGGCAAGGGGAGGGCGGTCTTGGCGGATGTGATGGTGATGGAAA
AGGAGGAGGAGAAAGGGAAGGAGAGGGAGGGAAGAAAGGTTGGGGGCAAA
AGGACGGCGATTGTGAAGACGGGATCGAAGATGGTTGTTGTCAAGAAGGA
GGAGGAAGGGAAGGAGGGAGGGAAGGAGCGATGGAGTATCAAGACGAGGA
ATGTGACGACAGCTTCGACGACGGTTGTTGTCAAGAAGGAGGAGGGAAGG
AAGGAGGGCGGGAAAGAGGGAGGGAGGGTGAAAAGGGAAAAGGTGACGAG
GGCGTCGAAGGTGACTGTTGTTGAGAAGGAGGAGGGAGGAAAGGAGAGAG
GGAGGATGAAGAGGGCCTTGGTTGTTACAGTGAAAACGGAGGAGTGTGGA
GAGGGGAAGGACGGAGGGAAGAAGCGAAAGGTCGCGACACCGAGGACTGT
GAGTATAAAAAGCGAGGGAGGGAAGGAGCAACGCAAAGGGTGCGTGACAC
GGACACGAAGTCTCAAGTGAGGGAGGGTAGGCATGGGTGTGGGAGGGAGG
AAGGTAAGGCAAGGCAAGCAAGCACCACACTTGTCAGACAAGTAAAATAA
TAATGGAATGAAAGGA
back to top

Coding sequence (CDS) from alignment at chr18:183266..186781+

>NO18G00440.1 ID=NO18G00440.1|Name=NO18G00440.1|organism=Nannochloropsis oceanica|type=CDS|length=1515bp|location=Sequence derived from alignment at chr18:183266..186781+ (Nannochloropsis oceanica)
ATGAGGAGCAAACCTGGTTCAAACACCACCACAGCCATGACAAAAACCAA
GGCCAAACAATCCAAGGCGACAAAGACGACGACAGTGAGCGCCAGCGCGG
CCCCTGCCTCTCTTCCTCCCCCTCCGCCCGCCCTTCTGTCCAAAGCCCAA
GCCATTCACCGCCTCCTCGATCAACTATACCCTAACCCTCCCATTCCTCT
CGACCACTTCGACAACTACTCCTTGTTGATTGCTGTGATCCTGTCTGCGC
AGACGACGGATGGAAAGGTAAACGAAGTAACACCCGGACTGTTCAAAGTT
GCCCCCACACCCGCCCACCTCGCGGCCCTCCCCCATGCCACCGTCCTTAG
CCTCATCCGCTCCGTGGGCCTGGCCCCGGGGAAGGCCAAAAACATCATCG
GCGCGGCGAAAATGCTGGTGGACACGTTTGGAGGACAGTGTCTATTGGTG
TTGTTGATACCAATATCTTATCCCGGTCCTCCTTTCATCGTGAGCCTGCA
TGTCCCTTCCACGTTCGAGGAACTGGAGTCTCTCCCCGGGGTAGGCCATA
AAACCGCCTCCGTCCTCATGAGCCAGGCCTTCAATTACCCTGCTTTTCCC
GTCGATACGCACGTCCATCGGTGCGCCCTCCGGTGGGGTCTCTGCAAGGA
GACGCAAGACGTCAAGAAAGTTGAGGCTGCCCTCAAGTCTCTCTTCCCCC
GGGACGCCTGGTCCCGTATTGGCCTTCAGATCATCTATTTTGGCCGGGAG
CACTGCCCCGCGAAGAAACACGTGTCCAGTGCATGTCCCATCTGCTGCTG
GGTCAAGGGCGGCAAAAGCAAGGGGGCGCCGCCTCCTTCCCTCCCCCTCA
CGTCATCAGGAAAGGGAGGGGGGAAGAATGACGGGAAGGAGGGAGGACTG
GAGGAGTGGTTGATTCAGTTCGAAGGCGCATCACCGGGGAAGGCAAACAA
GAATATCATTCTGTACAGCGAGCGGAGGAAGGAGGAGGAGGGAGGGAAGG
AGGGCAAGGGGAGGGCGGTCTTGGCGGATGTGATGGTGATGGAAAAGGAG
GAGGAGAAAGGGAAGGAGAGGGAGGGAAGAAAGGTTGGGGGCAAAAGGAC
GGCGATTGTGAAGACGGGATCGAAGATGGTTGTTGTCAAGAAGGAGGAGG
AAGGGAAGGAGGGAGGGAAGGAGCGATGGAGTATCAAGACGAGGAATGTG
ACGACAGCTTCGACGACGGTTGTTGTCAAGAAGGAGGAGGGAAGGAAGGA
GGGCGGGAAAGAGGGAGGGAGGGTGAAAAGGGAAAAGGTGACGAGGGCGT
CGAAGGTGACTGTTGTTGAGAAGGAGGAGGGAGGAAAGGAGAGAGGGAGG
ATGAAGAGGGCCTTGGTTGTTACAGTGAAAACGGAGGAGTGTGGAGAGGG
GAAGGACGGAGGGAAGAAGCGAAAGGTCGCGACACCGAGGACTGTGAGTA
TAAAAAGCGAGGGAGGGAAGGAGCAACGCAAAGGGTGCGTGACACGGACA
CGAAGTCTCAAGTGA
back to top
Synonyms
Publications