NO18G00380.1, NO18G00380.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO18G00380.1
Unique Name	NO18G00380.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1848
Alignment location	chr18:157419..160626 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr18	genome	chr18:157419..160626 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO18G00380.1 vs.
Match: CBN79894.1 (Short-chain dehydrogenase/reductase [Ectocarpus siliculosus])

HSP 1 Score: 278.5 bits (711), Expect = 3.100e-71
Identity = 154/336 (45.83%), Postives = 219/336 (65.18%), Query Frame = 0

Query:   40 LQGKVALVTGASRGIGRGIAFELAAAGATVYATARSLGDKECTEASLGGTLTSLVEEVQATSLISGSVVPLSCDHGQDTQVEAVLNHIQEKEGKLHYLINNAFALPAAGVDGMVGVSFWEQGTQVWDSVMNVGLRSHYVAACAAVPLMIATREKEGCTPA-ICNVGSFGGVSYVFNVAYGVGKAGVDRLSRDMAIELKKEGISSFSLWPGVVLTERMEDMRRQDPEKWEKEMGVG-EGYLETPRFAGRALAALLSASLPSSSSPRPSLLMDRSGSIQIVAELARENGVKDVDGGQPPSIRSLQFLLPNYAFKNLFVLAPFL-RPLVPDFKLPLSVM 373
            L+GKVA+VTG+SRGIG+GIA  L   G TVY T RS+G    T+  +GG+L     E++A     G  +P++CDH +D QV+A+   ++ ++G+L  L+NNAFAL   G    +   FW QG   WDS++ VGLRSHY+A+C A PLMI + +  G  P  I  V SFGG++Y FNVAYGVGKAGVDRL++DMAIEL++E ++  S++PG+V TE+M+ +  ++P ++E   G+     +ETP F GRA+AAL       ++ P    ++ ++G +QIVAELA++ G  DV G  PPSIRSL+FLLP Y F  +      +    VPD+ LP+ +M
Sbjct:   87 LRGKVAVVTGSSRGIGKGIAVTLGQRGCTVYVTGRSVGGNT-TDKEIGGSLEETAAEIEAAG---GKGIPVACDHAKDEQVKALFERVESEQGRLDILVNNAFAL---GPGDQLQAKFWTQGADAWDSLITVGLRSHYMASCFAAPLMIKSVKDRGGKPGLIACVSSFGGLAYSFNVAYGVGKAGVDRLAKDMAIELEEEKVAVVSVYPGIVKTEKMKSLMTKNPAEFEANTGIALSSPMETPFFTGRAVAAL-------AADPE---ILKKTGKVQIVAELAKQYGFTDVGGDTPPSIRSLRFLLPTYLFPKILPEGTKIDTSSVPDWLLPMFIM 405

The following BLAST results are available for this feature:

BLAST of NO18G00380.1 vs.

BLAST of NO18G00380.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
CBN79894.1	3.100e-71	45.83	Short-chain dehydrogenase/reductase [Ectocarpus si...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO18G00380	NO18G00380	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO18G00380.1	NO18G00380.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO18G00380.1.cds1	NO18G00380.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO18G00380.1.cds2	NO18G00380.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO18G00380.1.cds3	NO18G00380.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO18G00380.1.cds4	NO18G00380.1.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO18G00380.1.cds5	NO18G00380.1.cds5	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO18G00380.1.cds6	NO18G00380.1.cds6	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO18G00380.1.cds7	NO18G00380.1.cds7	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO18G00380.1.cds8	NO18G00380.1.cds8	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO18G00380.1.cds9	NO18G00380.1.cds9	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr18:157419..160626-
coding sequence from alignment at chr18:157419..160626-

mRNA sequence

>NO18G00380.1 ID=NO18G00380.1|Name=NO18G00380.1|organism=Nannochloropsis oceanica|type=mRNA|length=1848bp
AGGCACCGATACGACGGCCTTACCTGTGAGCAATCATGCCCCCTCAACGT
CTCCTCATTGGTATTCCCATGTGCCTACTCCTTGTCCTCCTCCTTGCCCA
CCTGTCTTCGCATGTCGTCTCTGCCTTCCTGCACATGTCCCTAGCTTCCC
CATTGCAAGGAAAAGTTGCCTTGGTCACCGGGGCTTCGCGCGGCATCGGG
AGAGGGATAGCATTCGAACTTGCTGCTGCAGGCGCGACGGTCTATGCGAC
AGCCCGCTCGCTGGGTGATAAGGAATGCACGGAGGCCTCACTCGGAGGCA
CCCTCACCTCCCTCGTCGAAGAAGTCCAAGCCACAAGTCTTATATCCGGC
AGCGTCGTCCCCCTCTCGTGCGATCACGGCCAAGACACCCAAGTCGAGGC
GGTCCTCAACCACATCCAGGAGAAAGAGGGGAAATTGCATTACTTGATTA
ATAACGCCTTCGCCTTACCCGCTGCAGGGGTAGACGGCATGGTTGGGGTG
AGCTTCTGGGAGCAAGGCACGCAGGTCTGGGACAGTGTAATGAACGTGGG
CTTACGAAGCCACTACGTTGCTGCCTGCGCTGCGGTTCCCCTCATGATAG
CGACAAGGGAAAAGGAGGGCTGCACGCCTGCCATATGCAACGTGGGCAGT
TTTGGGGGCGTGAGCTACGTCTTCAACGTCGCTTATGGCGTCGGAAAGGC
CGGCGTCGACCGTCTTTCACGCGACATGGCCATAGAGCTCAAAAAAGAAG
GAATCTCCTCCTTCTCCTTGTGGCCGGGGGTGGTACTGACGGAGAGGATG
GAAGACATGAGACGACAAGACCCGGAGAAATGGGAAAAGGAGATGGGGGT
GGGCGAGGGGTATCTCGAAACACCCCGTTTCGCCGGGCGGGCCCTCGCGG
CTCTGTTATCCGCCTCTCTGCCTTCTTCTTCCTCCCCCCGACCCTCTCTG
CTCATGGACCGCAGTGGCTCCATCCAGATTGTGGCAGAGCTCGCGAGGGA
GAACGGAGTGAAGGACGTGGATGGGGGACAGCCACCCTCCATCCGATCCC
TGCAGTTCTTGCTTCCTAACTACGCCTTCAAAAACCTGTTCGTCTTGGCA
CCTTTTCTACGTCCTCTTGTACCGGACTTCAAACTGCCCTTATCCGTGAT
GGGCGCACGTCCGGCGGCATAAAATGAGTGCAGTGCCAATGGTGGGGGAA
GGACTGTCGATGAAGGAACAGCGGAGATGAAGAATGGGATTCAAAAAAAG
TATGTAATAGTGATGTTTGACCAATGAAGCTGTCGCTTTTTGTTGAGAAC
CGGCAACACGTTGCTTTCGCGCTGCGTTTGCGAGTCGCCGCCCACGGTTA
TGGGCAGTTGAAAAGAGTACGAGGTGGATGCAAGGGAGAGAGCCACGCCC
AGAATGGAGAAGAGCGTGGGCATGATGCTTGTTTTCTGCTCCTGAACTTG
GTGTCGCGGTGGTCTTCGGAAAGGGGGGGGATGGGGGGGTCAATCAAAGA
ACTGGAAGGAGCGTAAACGTTTAGACGCGCTTCAGTGTAGTTGTTCTTAT
TGTCACGCGGGGTGTGAGCGAGGCAACAGAAAATGAAGAGCTTAAATACA
AACACCCAAATATTGCACAAAAGGGCGCCACGGTATGCAGTGTAGAGGTT
TGTCGTGGGTCCGCTTCTCACATATACATAATAGCACGCCAGATCTCGAG
GGTTCAAGTGCAAAGTATGATTGATAAAAATCCTTCTTCACCCTTGCTCT
CTCCCTACCTCTCTCCTTCCCTCTCTTCCCTCCTTTTCTACCTTCTCCAA
CACTATTCACAAACATTCCAAGCCCTGTCCCCCCTCCCTCCCTCCCTC

protein sequence of NO18G00380.1

>NO18G00380.1-protein ID=NO18G00380.1-protein|Name=NO18G00380.1|organism=Nannochloropsis oceanica|type=polypeptide|length=379bp
MPPQRLLIGIPMCLLLVLLLAHLSSHVVSAFLHMSLASPLQGKVALVTGA
SRGIGRGIAFELAAAGATVYATARSLGDKECTEASLGGTLTSLVEEVQAT
SLISGSVVPLSCDHGQDTQVEAVLNHIQEKEGKLHYLINNAFALPAAGVD
GMVGVSFWEQGTQVWDSVMNVGLRSHYVAACAAVPLMIATREKEGCTPAI
CNVGSFGGVSYVFNVAYGVGKAGVDRLSRDMAIELKKEGISSFSLWPGVV
LTERMEDMRRQDPEKWEKEMGVGEGYLETPRFAGRALAALLSASLPSSSS
PRPSLLMDRSGSIQIVAELARENGVKDVDGGQPPSIRSLQFLLPNYAFKN
LFVLAPFLRPLVPDFKLPLSVMGARPAA*

mRNA from alignment at chr18:157419..160626-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO18G00380.1 ID=NO18G00380.1|Name=NO18G00380.1|organism=Nannochloropsis oceanica|type=mRNA|length=3208bp|location=Sequence derived from alignment at chr18:157419..160626- (Nannochloropsis oceanica)
AGGCACCGATACGACGGCCTTACCTGTGAGCAATCATGCCCCCTCAACGT
CTCCTCATTGGTATTCCCATGTGCCTACTCCTTGTCCTCCTCCTTGCCCA
CCTGTCTTCGCATGTCGTCTCTGCCTTCCTGCACATGTCCCTAGCTTCCC
CATTGCAAGGAAAAGTTGCCTTGGTCACCGGGGCTTCGCGCGGCATCGGG
AGAGGGATAGCATTCGAACTTGCTGCTGCAGGTACATCATCTGTCGCCCA
CACACATACCCTTTCTACCTGTTGTTTCACTTCCATCGAACGGCGTCTCC
CTCCCTGGTCTGTCCAGGGTAGTCCCCTTCTTTCATCTTTCCTGCCAGTT
TCTCCCTCCCTCCGTCTTCAATCAGCTCTTGTTTCCTATTTCATTCCTTC
TTATTTTTCTTTCATTCATTTCCCACCCTCCTCCCTCTTGCTGTTGCTTC
CCTCCCCTCCCCCCGTCCCCGTCCAATCTCCCCCCAAACCTCCAGGCGCG
ACGGTCTATGCGACAGCCCGCTCGCTGGGTGATAAGGAATGCACGGAGGG
TACGTCAACTCATGGGATGGTCCGATCGCTGAGATGCATCTCAATCCGTT
CCTCTGCCTTTTTCACAACTCTCCTCTTTTTTTCCTTGCACACGCAGCTA
TCCCTTCCTCACCTTCCTTCCCTCCCCCACCTTCCTTCCCCCTCCTTCCC
TCCTCACATAGCCTCACTCGGAGGCACCCTCACCTCCCTCGTCGAAGAAG
TCCAAGCCACAAGTCTTATATCCGGCAGCGTCGTCCCCCTCTCGTGCGAT
CACGGCCAAGACACCCAAGTCGAGGCGGTCCTCAACCACATCCAGGAGAA
AGAGGGGAAATTGCATTACTTGATTAATAACGCCTTCGCCTTACCCGCTG
CAGGGGTAGACGGCATGGTTGGGGTGAGCTTCTGGGAGCAAGGCACGCAG
GTACATGCATGAATGAGGGTGACGGACATTTTGGGGTTAATCCCCGACAC
CTCCCTCGCTTGTGAGAACGCCTCTCGATATTTCCCTCCCTTCTTCCCTC
CTTCCCTCCCTCCATCCCTAGGTCTGGGACAGTGTAATGAACGTGGGCTT
ACGAAGCCACTACGTTGCTGCCTGCGCTGCGGTTCCCCTCATGATAGCGA
CAAGGGAAAAGGTAGGTACATGCAGGCCTCTTCCCCTTTCTTCCTTCCTT
CCCTTCACCCAGTCCCTCCTTTCCTTCCTCCCTCCCTCCCTCCCTTCTTT
ATGCCGAATGGTGTACACTACTCCCGCTCCCCTGATGCGTCTCCCTCCTC
CCTCCCTCACCCCCTCCACCCCTCCCTCTCTTTCCCTTCCTCGCCCCTCG
CAGGAGGGCTGCACGCCTGCCATATGCAACGTGGGCAGTTTTGGGGGCGT
GGTAGGGATCGAGGGGACGAGGAGGGGAGGGAGGGAAGGGTGGGCTTGCA
GATGACACGACGGAAGAGGGAAGAAAGAAAGATAAAGCCTCTGACTCACA
ATTGCTCTTCAAACAGAGCTACGTCTTCAACGTCGCTTATGGCGTCGGAA
AGGCCGGTAAGTTCACTCATCCCTCCCTCCCGCCCTCCCTCCCTCCCTCC
CATCCCTTCATCCCATCCACTCTCTCTCCCTCTCTCCCTCCCTCCAGGCG
TCGACCGTCTTTCACGCGACATGGCCATAGAGCTCAAAAAAGAAGGAATC
TCCTCCTTCTCCTTGTGGCCGGGGGTGGTACTGACGGAGAGGATGGAAGA
CATGAGACGACAAGACCCGGAGAAATGGGAAAAGGAGATGGGGGTGGGCG
AGGGGTAAGGAGGGCGGGAGGCAGGCAGGGGCGGGAGGCGAGACAAAGAG
GGTGAGATGATTGGCACGAGCGTCTGTCCGGTCGGCGGGTGTGCAGTTAT
TCATCTCACGCGTCATCTTTTATGAGCTCACCTTCGTTGTCTTTTCCCCC
TCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCGTAAGGT
ATCTCGAAACACCCCGTTTCGCCGGGCGGGCCCTCGCGGCTCTGTTATCC
GCCTCTCTGCCTTCTTCTTCCTCCCCCCGACCCTCTCTGCTCATGGACCG
CAGTGGCTCCATCCAGATTGTGGCAGAGCTCGCGAGGGAGAACGGAGTGA
AGGACGTGGATGGGGGACAGCCACCCTCCATCCGATCCCTGCAGTTCTTG
GTATGCCCGTAGGGGGTGCAATGCCAAACCCATTCTTTCAACTCTTGACG
GTCTGCTTATTGGGCCTCTTATGTATGCAATCCTGTCTTTCGTATTTTAC
CTTATTTCCCTGCCGCTTTCAAATTACTCCGGTACTTTCTCTCTCGCCAA
TGTGTCGAACGTGACACCTTACCTCACCTTCCCCTCCCCTCTCTCACTCC
CCTTTCTTTTCCACTCACCAGCTTCCTAACTACGCCTTCAAAAACCTGTT
CGTCTTGGCACCTTTTCTACGTCCTCTTGTACCGGACTTCAAACTGCCCT
TATCCGTGATGGGCGCACGTCCGGCGGCATAAAATGAGTGCAGTGCCAAT
GGTGGGGGAAGGACTGTCGATGAAGGAACAGCGGAGATGAAGAATGGGAT
TCAAAAAAAGTATGTAATAGTGATGTTTGACCAATGAAGCTGTCGCTTTT
TGTTGAGAACCGGCAACACGTTGCTTTCGCGCTGCGTTTGCGAGTCGCCG
CCCACGGTTATGGGCAGTTGAAAAGAGTACGAGGTGGATGCAAGGGAGAG
AGCCACGCCCAGAATGGAGAAGAGCGTGGGCATGATGCTTGTTTTCTGCT
CCTGAACTTGGTGTCGCGGTGGTCTTCGGAAAGGGGGGGGATGGGGGGGT
CAATCAAAGAACTGGAAGGAGCGTAAACGTTTAGACGCGCTTCAGTGTAG
TTGTTCTTATTGTCACGCGGGGTGTGAGCGAGGCAACAGAAAATGAAGAG
CTTAAATACAAACACCCAAATATTGCACAAAAGGGCGCCACGGTATGCAG
TGTAGAGGTTTGTCGTGGGTCCGCTTCTCACATATACATAATAGCACGCC
AGATCTCGAGGGTTCAAGTGCAAAGTATGATTGATAAAAATCCTTCTTCA
CCCTTGCTCTCTCCCTACCTCTCTCCTTCCCTCTCTTCCCTCCTTTTCTA
CCTTCTCCAACACTATTCACAAACATTCCAAGCCCTGTCCCCCCTCCCTC
CCTCCCTC

Coding sequence (CDS) from alignment at chr18:157419..160626-

>NO18G00380.1 ID=NO18G00380.1|Name=NO18G00380.1|organism=Nannochloropsis oceanica|type=CDS|length=1137bp|location=Sequence derived from alignment at chr18:157419..160626- (Nannochloropsis oceanica)
ATGCCCCCTCAACGTCTCCTCATTGGTATTCCCATGTGCCTACTCCTTGT
CCTCCTCCTTGCCCACCTGTCTTCGCATGTCGTCTCTGCCTTCCTGCACA
TGTCCCTAGCTTCCCCATTGCAAGGAAAAGTTGCCTTGGTCACCGGGGCT
TCGCGCGGCATCGGGAGAGGGATAGCATTCGAACTTGCTGCTGCAGGCGC
GACGGTCTATGCGACAGCCCGCTCGCTGGGTGATAAGGAATGCACGGAGG
CCTCACTCGGAGGCACCCTCACCTCCCTCGTCGAAGAAGTCCAAGCCACA
AGTCTTATATCCGGCAGCGTCGTCCCCCTCTCGTGCGATCACGGCCAAGA
CACCCAAGTCGAGGCGGTCCTCAACCACATCCAGGAGAAAGAGGGGAAAT
TGCATTACTTGATTAATAACGCCTTCGCCTTACCCGCTGCAGGGGTAGAC
GGCATGGTTGGGGTGAGCTTCTGGGAGCAAGGCACGCAGGTCTGGGACAG
TGTAATGAACGTGGGCTTACGAAGCCACTACGTTGCTGCCTGCGCTGCGG
TTCCCCTCATGATAGCGACAAGGGAAAAGGAGGGCTGCACGCCTGCCATA
TGCAACGTGGGCAGTTTTGGGGGCGTGAGCTACGTCTTCAACGTCGCTTA
TGGCGTCGGAAAGGCCGGCGTCGACCGTCTTTCACGCGACATGGCCATAG
AGCTCAAAAAAGAAGGAATCTCCTCCTTCTCCTTGTGGCCGGGGGTGGTA
CTGACGGAGAGGATGGAAGACATGAGACGACAAGACCCGGAGAAATGGGA
AAAGGAGATGGGGGTGGGCGAGGGGTATCTCGAAACACCCCGTTTCGCCG
GGCGGGCCCTCGCGGCTCTGTTATCCGCCTCTCTGCCTTCTTCTTCCTCC
CCCCGACCCTCTCTGCTCATGGACCGCAGTGGCTCCATCCAGATTGTGGC
AGAGCTCGCGAGGGAGAACGGAGTGAAGGACGTGGATGGGGGACAGCCAC
CCTCCATCCGATCCCTGCAGTTCTTGCTTCCTAACTACGCCTTCAAAAAC
CTGTTCGTCTTGGCACCTTTTCTACGTCCTCTTGTACCGGACTTCAAACT
GCCCTTATCCGTGATGGGCGCACGTCCGGCGGCATAA

Synonyms

Publications