NO18G00350.1, NO18G00350.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO18G00350.1
Unique NameNO18G00350.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1572
Alignment locationchr18:147697..149587 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr18genomechr18:147697..149587 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO18G00350.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO18G00350NO18G00350Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO18G00350.1NO18G00350.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO18G00350.1.cds1NO18G00350.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO18G00350.1.cds2NO18G00350.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO18G00350.1.cds3NO18G00350.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO18G00350.1 ID=NO18G00350.1|Name=NO18G00350.1|organism=Nannochloropsis oceanica|type=mRNA|length=1572bp
AGGGGCATCACGAAGGGCATGGAGGGAGGGAGGAGGCAAGAGAAGAAGGA
ATGCAGACAGTAGCAGTAGCTGTAGAATCCCATGGCGGTGAGCGGAAATC
TATTCAACTCTCCACTCCCTGATTCATTCCTTCCTTTCCCCTTCACTCCT
TCCCTCCCTCCCTCCCTCGGCCACCTCTCTCCCTCCTGTCTTAGCATGAG
CAACCCTCCGGACGAGCAGTACTTCCCTCCCCCAACCACCTCCTTCCCTC
CCTCTTGTTCCGCCTCCTGGGGGCGTGCCTCCTCCTTCATGTCGTTCAAG
CGGCCGTTGCCTGCTTCTTTCTCCCACGACAGTGAAGGGTGGGAGGAGGC
AGGAGGAGGAGGAGGAGGAGGAGGAGAAGGAGGAGGAGGAGGAAAGGGGG
AAAATGGCGTGGACACATTTCTTTCCATTCCTCCCTTGTCTTCGACGGAG
TCAGCAGTTTTCTGGACCAAGCAGGCGCATATGGCAGCAGTCGCCGCAGC
CTCAGCATCGGTGTCAAAAGGAGGGGGAGGAGGAAGAGGAGGGAGGAGAG
GAGGAAACAAAGGGGGAAGAGGTGGTGGTGGAGGAGGGGAGAGAGTGAAT
GAAGAGTCGCATCAAGACCAGGGCATGGGCAGATCGAGGAGTCAGCATAA
CCCGTCGCGAAGCAGCAGCCCACTACCGGTGTCCGCGTCTTGCCCCCCGC
TATTCTTTCTCCCGTCCTCCCTCCCTCTTAATCACCAGCATCAGCAACAG
CACGATCAGCAACAGCCGCAGCAGCATCACCTCGCCGCCTCAGAACCGCC
TCTGGCCGTCTCCATCAAGCCAACCTGCAGCTCCCCCAACCGGAGCATCG
GTCGCGCTAGCCCCTCCTTCCCTTCTCCATACCCCGGGTCCCACTTTCAG
CAGCAGCAGCAGCAGTACGACAAACATCTCTCTCATCAGCAGCATCAGCA
GCAGCAGCAGCAGCAGCAGCAGCAGCAACAACAACAACAACAACAACAAC
AACAACAGCAGCAGCAGCAACAGCAGCAGCAGCAGCAGCAGCTACTACTA
CTACAGCAGCAGCAGCGGCAACAACAACAACAACAACAGCAGCAGCAGCA
ACAGCAGCAGCAGCAGCTACTAATACTACAGCAGCAGCAGCAGCAGCAGC
AAGTCAAAACGCACTTTGCCCATCCTCCCTCTCATCTTCCCCTTCCCCCT
CCTCCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTC
CTTCTCTTCTTCCTCTTCGTCTTCGACCTCTGCGATCCCTCATGAGCGCC
AACAGCGTCCGCAACAACAACCACAACAACAACAAGAACAACAACAGCAA
CAACAACATCAACAACAACAACAGCAGCAGCAGCAACAACAACAACAACA
ACAACCACATTACCGTCAGCAGCAGCAGCAGCAGCAGCAGCAGCCATTCA
CCTCTTCTTCCTCCTTTGCAGGCGGCCCTCCCCTCCGCTCCTCCCTCCAT
CCCTTCCGGTCCCCCCCCCCCCCCAAAAGCAGCAGCAACAGCCACAGCAA
CAGCAAACAGCAAAACCTTTAA
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protein sequence of NO18G00350.1

>NO18G00350.1-protein ID=NO18G00350.1-protein|Name=NO18G00350.1|organism=Nannochloropsis oceanica|type=polypeptide|length=497bp
MAVSGNLFNSPLPDSFLPFPFTPSLPPSLGHLSPSCLSMSNPPDEQYFPP
PTTSFPPSCSASWGRASSFMSFKRPLPASFSHDSEGWEEAGGGGGGGGEG
GGGGKGENGVDTFLSIPPLSSTESAVFWTKQAHMAAVAAASASVSKGGGG
GRGGRRGGNKGGRGGGGGGERVNEESHQDQGMGRSRSQHNPSRSSSPLPV
SASCPPLFFLPSSLPLNHQHQQQHDQQQPQQHHLAASEPPLAVSIKPTCS
SPNRSIGRASPSFPSPYPGSHFQQQQQQYDKHLSHQQHQQQQQQQQQQQQ
QQQQQQQQQQQQQQQQQQQQLLLLQQQQRQQQQQQQQQQQQQQQQLLILQ
QQQQQQQVKTHFAHPPSHLPLPPPPSSSSSSSSSSSSSSSFSSSSSSSTS
AIPHERQQRPQQQPQQQQEQQQQQQHQQQQQQQQQQQQQQQPHYRQQQQQ
QQQQPFTSSSSFAGGPPLRSSLHPFRSPPPPKSSSNSHSNSKQQNL*
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mRNA from alignment at chr18:147697..149587+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO18G00350.1 ID=NO18G00350.1|Name=NO18G00350.1|organism=Nannochloropsis oceanica|type=mRNA|length=1891bp|location=Sequence derived from alignment at chr18:147697..149587+ (Nannochloropsis oceanica)
AGGGGCATCACGAAGGGCATGGAGGGAGGGAGGAGGCAAGAGAAGAAGGA
ATGCAGACAGTAGCAGTAGCTGTAGAATCCCATGGCGGTGAGCGGAAATC
TATTCAACTCTCCACTCCCTGATTCATTCCTTCCTTTCCCCTTCACTCCT
TCCCTCCCTCCCTCCCTCGGCCACCTCTCTCCCTCCTGTCTTAGCATGAG
CAACCCTCCGGACGAGCAGTACTTCCCTCCCCCAACCACCTCCTTCCCTC
CCTCTTGTTCCGCCTCCTGGGGGCGTGCCTCCTCCTTCATGTCGTTCAAG
CGGCCGTTGCCTGCTTCTTTCTCCCACGACAGTGAAGGGTGGGAGGAGGC
AGGAGGAGGAGGAGGAGGAGGAGGAGAAGGAGGAGGAGGAGGAAAGGGGG
AAAATGGCGTGGACACATTTCTTTCCATTCCTCCCTTGTCTTCGACGGAG
TCAGCAGTTTTCTGGACCAAGCAGGCGCATATGGCAGCAGTCGCCGCAGC
CTCAGCATCGGTGTCAAAAGGAGGGGGAGGAGGAAGAGGAGGGAGGAGAG
GAGGAAACAAAGGGGGAAGAGGTGGTGGTGGAGGAGGGGAGAGAGTGAAT
GAAGAGTCGCATCAAGACCAGGGCATGGGCAGATCGAGGAGTCAGGTAGG
AAGGGTGGGAGGGAGGGAGAGACAGCTGGATGGAAGAAGGGTGGAAAGCG
GTGTCGGCTGAGAAGACGCGCCTTGGTGACTTGACTTCTCCTCACCTCCC
TTCATCCTTGCTCTCCCTCTTTCCCTCTCTTCCTACCCACAGCATAACCC
GTCGCGAAGCAGCAGCCCACTACCGGTGTCCGCGTCTTGCCCCCCGCTAT
TCTTTCTCCCGTCCTCCCTCCCTCTTAATCACCAGCATCAGCAACAGCAC
GATCAGCAACAGCCGCAGCAGCATCACCTCGCCGCCTCAGAACGTAGGTC
GAAATAAGATGGAGGAATGGAGGGAGGGACGGAGGAAGGGACGGAGGGAG
GGCTTGCATCTTCTTGTGCGTTGACTTCCTCTCATTCTATGTCTCTCCCA
GCAATGGCTAATACTCGCTCCCTCTCTCCCTCTCTCCCTCTCTCCCTCCC
TCCCTCCCTAACTAGCGCCTCTGGCCGTCTCCATCAAGCCAACCTGCAGC
TCCCCCAACCGGAGCATCGGTCGCGCTAGCCCCTCCTTCCCTTCTCCATA
CCCCGGGTCCCACTTTCAGCAGCAGCAGCAGCAGTACGACAAACATCTCT
CTCATCAGCAGCATCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAA
CAACAACAACAACAACAACAACAACAGCAGCAGCAGCAACAGCAGCAGCA
GCAGCAGCAGCTACTACTACTACAGCAGCAGCAGCGGCAACAACAACAAC
AACAACAGCAGCAGCAGCAACAGCAGCAGCAGCAGCTACTAATACTACAG
CAGCAGCAGCAGCAGCAGCAAGTCAAAACGCACTTTGCCCATCCTCCCTC
TCATCTTCCCCTTCCCCCTCCTCCCTCCTCCTCCTCCTCCTCCTCCTCCT
CCTCCTCCTCCTCCTCCTCCTTCTCTTCTTCCTCTTCGTCTTCGACCTCT
GCGATCCCTCATGAGCGCCAACAGCGTCCGCAACAACAACCACAACAACA
ACAAGAACAACAACAGCAACAACAACATCAACAACAACAACAGCAGCAGC
AGCAACAACAACAACAACAACAACCACATTACCGTCAGCAGCAGCAGCAG
CAGCAGCAGCAGCCATTCACCTCTTCTTCCTCCTTTGCAGGCGGCCCTCC
CCTCCGCTCCTCCCTCCATCCCTTCCGGTCCCCCCCCCCCCCCAAAAGCA
GCAGCAACAGCCACAGCAACAGCAAACAGCAAAACCTTTAA
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Coding sequence (CDS) from alignment at chr18:147697..149587+

>NO18G00350.1 ID=NO18G00350.1|Name=NO18G00350.1|organism=Nannochloropsis oceanica|type=CDS|length=1491bp|location=Sequence derived from alignment at chr18:147697..149587+ (Nannochloropsis oceanica)
ATGGCGGTGAGCGGAAATCTATTCAACTCTCCACTCCCTGATTCATTCCT
TCCTTTCCCCTTCACTCCTTCCCTCCCTCCCTCCCTCGGCCACCTCTCTC
CCTCCTGTCTTAGCATGAGCAACCCTCCGGACGAGCAGTACTTCCCTCCC
CCAACCACCTCCTTCCCTCCCTCTTGTTCCGCCTCCTGGGGGCGTGCCTC
CTCCTTCATGTCGTTCAAGCGGCCGTTGCCTGCTTCTTTCTCCCACGACA
GTGAAGGGTGGGAGGAGGCAGGAGGAGGAGGAGGAGGAGGAGGAGAAGGA
GGAGGAGGAGGAAAGGGGGAAAATGGCGTGGACACATTTCTTTCCATTCC
TCCCTTGTCTTCGACGGAGTCAGCAGTTTTCTGGACCAAGCAGGCGCATA
TGGCAGCAGTCGCCGCAGCCTCAGCATCGGTGTCAAAAGGAGGGGGAGGA
GGAAGAGGAGGGAGGAGAGGAGGAAACAAAGGGGGAAGAGGTGGTGGTGG
AGGAGGGGAGAGAGTGAATGAAGAGTCGCATCAAGACCAGGGCATGGGCA
GATCGAGGAGTCAGCATAACCCGTCGCGAAGCAGCAGCCCACTACCGGTG
TCCGCGTCTTGCCCCCCGCTATTCTTTCTCCCGTCCTCCCTCCCTCTTAA
TCACCAGCATCAGCAACAGCACGATCAGCAACAGCCGCAGCAGCATCACC
TCGCCGCCTCAGAACCGCCTCTGGCCGTCTCCATCAAGCCAACCTGCAGC
TCCCCCAACCGGAGCATCGGTCGCGCTAGCCCCTCCTTCCCTTCTCCATA
CCCCGGGTCCCACTTTCAGCAGCAGCAGCAGCAGTACGACAAACATCTCT
CTCATCAGCAGCATCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAA
CAACAACAACAACAACAACAACAACAGCAGCAGCAGCAACAGCAGCAGCA
GCAGCAGCAGCTACTACTACTACAGCAGCAGCAGCGGCAACAACAACAAC
AACAACAGCAGCAGCAGCAACAGCAGCAGCAGCAGCTACTAATACTACAG
CAGCAGCAGCAGCAGCAGCAAGTCAAAACGCACTTTGCCCATCCTCCCTC
TCATCTTCCCCTTCCCCCTCCTCCCTCCTCCTCCTCCTCCTCCTCCTCCT
CCTCCTCCTCCTCCTCCTCCTTCTCTTCTTCCTCTTCGTCTTCGACCTCT
GCGATCCCTCATGAGCGCCAACAGCGTCCGCAACAACAACCACAACAACA
ACAAGAACAACAACAGCAACAACAACATCAACAACAACAACAGCAGCAGC
AGCAACAACAACAACAACAACAACCACATTACCGTCAGCAGCAGCAGCAG
CAGCAGCAGCAGCCATTCACCTCTTCTTCCTCCTTTGCAGGCGGCCCTCC
CCTCCGCTCCTCCCTCCATCCCTTCCGGTCCCCCCCCCCCCCCAAAAGCA
GCAGCAACAGCCACAGCAACAGCAAACAGCAAAACCTTTAA
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Synonyms
Publications