NO17G02990.3, NO17G02990.3 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO17G02990.3
Unique Name	NO17G02990.3
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	4135
Alignment location	chr17:893240..900257 -

Link to JBrowse

Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr17	genome	chr17:893240..900257 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

[Close]

BLAST of NO17G02990.3 vs.
Match: EWM24104.1 (atp-dependent rna helicase [Nannochloropsis gaditana])

HSP 1 Score: 1100.9 bits (2846), Expect = 0.000e+0
Identity = 602/872 (69.04%), Postives = 680/872 (77.98%), Query Frame = 0

Query:    1 MLPSLRLVRRAQQQQQHFHLACLMDFTRQYAKIPVARVMAAATENSLRGGRGGRTL---SRGCVSSSSSGSSSMTQLPSPPPVSAMGVEQPENSLPTTAREEKPTGLSSPPSSKGRIALEGGPEDGREDGRGGLPIVPYMGEKHMGRDYYSKRFRLLVQHMVEGGPPAAMLEENEERWVGLPSFQWKMAVVNFMNEVFLRPKETLGDEYMRILHAFDDVPGSVLGAFHNAMDAWHAKVRRHSFTMSGDKPPLPPLPLEFARVEQMLTPFILRRTSSASPPSLASSTAPSLASTD-HAEGEAGQ----GGREERLRHVAAMEEEERKEKKAMDLGQLVRVCDMRLPHDWYPYARLMRRKIVYHGGPTNSGKTYHALQRLKAADPTKGGGLYLGPLRLLALEVYDALNEDGVYCSLLTGQEKRLVPFSDHTSATVEMCNLHQDYDVAVVDEIQMIGDPERGHAWTRALLGLRAKEIHLCGGPEARDVVTRLCQATGDELEFRNYERMTELKVAEDPLLDYSQVQAGDCIVAFNKSDICSIKQEIEAKTRHKCCMVYGSLPSETRSAQARIFNEEGTGYDVLVASDAIGMGLNLNIKRIIFHSLIKGSDDGGAEVLHSGMIKQIAGRAGRRSSRFPNGEVTCYKKEDMQFLRSGLGTATEQIARAGLFPTAEQLEDFSILLQTQVERVRSSGGMLEDETGRRRGRKGRGQLGALDTTLFSKEGGME---GGKTE-GEEEGTEEGKE--EEEEEGLGLMEVMDSFFNMAEVSDTYHMCRSRSMASIASYLAQVKPLTIAERYTLCSVPINTRDRLAMQMLYQFAAARAARRPMPLSIRLPGKPPSTLYGMNELCTKHSILDAYLWLSHKFPSTFVQ 859
            ML  LRLV +A  Q+ H+ L   +   R+  +     ++     +    GR    L    RG ++  SS SSS     S      +G E    S  +  + E  T +      K R   E   E GR  G G     PY GEKH+GRDYYSKRFRLLVQ+MVEGGPP AM EE E R  GLPSFQWKMAVVNFMN+ FL P++TL DEY+ +LHA DDVPG+V+G+FHN  DAWHAKVRRHS+TMSG+KP LPPLP EF RVE +L PFI+R  ++A P S     APSLA  +     E+G+    GG  +R+    A  ++ERK  K   LGQLVRVCDMRLPHDWYPYARLMRRKI+YH GPTNSGKTYHALQRLK ADP KGGGLYLGPLRLLALE+YD LNE+GVYCSLLTGQEKRL+PFSDHTSATVEMC+L QDYDVAV+DEIQMIGDPERGHAWTRALLGLRAKEIHLCGGPEA +VV+RLCQATGD+LE R YERMTEL +A +PLLDYS+V  GDCIVAF+KSDICSIKQEIEAKT HKCCMVYGSLPSETRSAQARIFNEEGTG+DVLVA+DAIGMGLNLNI+RIIFHSLIK SD+GGAEVLHSGMIKQIAGRAGRRSSRFP GEVTCYK EDM+FLR GLGTATEQIARAGLFP+ EQLEDF+ LL++QV R++ S G L  E GR + RK +G    L  + F+++ G+E   G K E G+EE  EEG++  EEEEEGLGLMEVMDSFFNMAEVSDTYHMCRSRSMASIASYLAQVKPL+IAERY L SVPI++RDR AMQMLYQFAAARAARRPMPLS+RLP  PP+TL GMNELCTKHS+LDAYLWLSHKFPSTFVQ
Sbjct:    5 MLRYLRLVDQAGPQK-HYQLWVFLKL-RKSMRTRHPYILNLLATDIFACGRMVHELPRDGRGALARHSSSSSSCQTAVSG---GDLGTETCNKS-SSLDKSEIITEVEGSKEIKERTDSE--EEGGRHGGHGA----PYSGEKHLGRDYYSKRFRLLVQYMVEGGPPIAMREEMETRGDGLPSFQWKMAVVNFMNQAFLWPQDTLKDEYLPLLHALDDVPGAVMGSFHNTFDAWHAKVRRHSYTMSGEKPALPPLPPEFMRVEAILLPFIIRSLAAARPLS-----APSLAGVEGEGREESGEETKLGGERQRMGESTA--DKERKAMKDSGLGQLVRVCDMRLPHDWYPYARLMRRKIIYHAGPTNSGKTYHALQRLKMADPAKGGGLYLGPLRLLALEIYDTLNEEGVYCSLLTGQEKRLIPFSDHTSATVEMCSLRQDYDVAVLDEIQMIGDPERGHAWTRALLGLRAKEIHLCGGPEAVEVVSRLCQATGDDLEIRKYERMTELTIASEPLLDYSKVMVGDCIVAFSKSDICSIKQEIEAKTSHKCCMVYGSLPSETRSAQARIFNEEGTGFDVLVATDAIGMGLNLNIRRIIFHSLIKVSDEGGAEVLHSGMIKQIAGRAGRRSSRFPRGEVTCYKGEDMEFLRQGLGTATEQIARAGLFPSPEQLEDFASLLESQVGRIKGS-GELGGEEGRWQQRK-KGLSSPLHASFFARDIGLEMNRGKKEENGKEETGEEGQQTSEEEEEGLGLMEVMDSFFNMAEVSDTYHMCRSRSMASIASYLAQVKPLSIAERYILSSVPISSRDRFAMQMLYQFAAARAARRPMPLSVRLPASPPTTLLGMNELCTKHSVLDAYLWLSHKFPSTFVQ 855

The following BLAST results are available for this feature:

BLAST of NO17G02990.3 vs.

BLAST of NO17G02990.3 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM24104.1	0.000e+0	69.04	atp-dependent rna helicase [Nannochloropsis gadita...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO17G02990	NO17G02990	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO17G02990.3	NO17G02990.3-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO17G02990.3.cds1	NO17G02990.3.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO17G02990.3.cds2	NO17G02990.3.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO17G02990.3.cds3	NO17G02990.3.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO17G02990.3.cds4	NO17G02990.3.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO17G02990.3.cds5	NO17G02990.3.cds5	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO17G02990.3.cds6	NO17G02990.3.cds6	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO17G02990.3.cds7	NO17G02990.3.cds7	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO17G02990.3.cds8	NO17G02990.3.cds8	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO17G02990.3.cds9	NO17G02990.3.cds9	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO17G02990.3.cds10	NO17G02990.3.cds10	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO17G02990.3.cds11	NO17G02990.3.cds11	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO17G02990.3.cds12	NO17G02990.3.cds12	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO17G02990.3.cds13	NO17G02990.3.cds13	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO17G02990.3.cds14	NO17G02990.3.cds14	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO17G02990.3.cds15	NO17G02990.3.cds15	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO17G02990.3.cds16	NO17G02990.3.cds16	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO17G02990.3.cds17	NO17G02990.3.cds17	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO17G02990.3.cds18	NO17G02990.3.cds18	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr17:893240..900257-
coding sequence from alignment at chr17:893240..900257-

mRNA sequence

>NO17G02990.3 ID=NO17G02990.3|Name=NO17G02990.3|organism=Nannochloropsis oceanica|type=mRNA|length=4135bp
ACAGGCTCGAGCAAGAAATAAACATCTACTTTGGGCACGCATGTTATTGC
CTTCGCTGTGCATCACCTAGTGCCACGAAAAGCCAGGTTGCGCTCCTCAA
CCACCACGCTCTTCACCTTCAATCTCGCAATGCTACCCTCCCTACGCCTC
GTCCGCCGCGCCCAGCAGCAACAGCAGCATTTCCACCTGGCCTGCTTGAT
GGATTTCACCAGGCAATACGCCAAAATTCCCGTTGCGCGTGTGATGGCAG
CGGCTACGGAGAATAGCTTAAGAGGTGGGAGGGGAGGGCGAACACTGTCG
CGGGGTTGTGTCTCGTCCTCGTCCTCAGGCTCCTCCTCGATGACACAACT
ACCATCACCACCACCAGTGTCGGCTATGGGCGTGGAGCAGCCAGAAAATA
GCCTCCCGACCACGGCCAGGGAGGAGAAGCCCACTGGCCTCTCCTCTCCC
CCGTCTTCTAAGGGTCGAATCGCCCTGGAGGGAGGGCCGGAAGACGGGAG
GGAGGACGGGCGCGGAGGATTGCCGATAGTCCCCTATATGGGAGAGAAAC
ACATGGGCCGTGATTACTACTCGAAGCGATTTCGGCTTTTGGTCCAGCAC
ATGGTGGAGGGTGGGCCACCCGCCGCGATGCTGGAGGAGAATGAGGAGCG
ATGGGTTGGCCTGCCCTCATTCCAGTGGAAGATGGCGGTTGTGAACTTCA
TGAACGAAGTCTTCCTCCGGCCCAAGGAAACTCTCGGGGACGAATACATG
CGCATTCTTCATGCCTTCGACGACGTTCCTGGCTCAGTCCTGGGGGCCTT
CCACAACGCTATGGACGCTTGGCATGCTAAGGTCCGGCGCCACAGCTTCA
CTATGAGTGGCGACAAACCACCCCTCCCTCCCCTCCCCCTCGAGTTCGCC
CGCGTGGAGCAGATGCTGACCCCCTTCATCCTCCGTCGCACCTCCTCCGC
GTCCCCTCCCTCCCTCGCTTCCTCCACCGCGCCGTCCCTGGCCTCGACCG
ACCACGCCGAGGGGGAAGCCGGGCAGGGCGGGAGGGAGGAACGGTTGCGG
CATGTGGCGGCGATGGAGGAGGAGGAGAGGAAGGAGAAGAAGGCCATGGA
CTTGGGGCAGCTGGTGCGGGTGTGCGACATGAGACTGCCGCACGATTGGT
ACCCATACGCTAGGTTGATGCGCAGGAAAATCGTCTACCACGGAGGCCCG
ACCAACTCGGGTAAGACCTACCATGCCCTCCAACGCCTCAAGGCGGCCGA
TCCGACGAAGGGCGGAGGCCTCTATCTGGGTCCCCTGCGTCTCCTCGCTC
TGGAGGTGTATGACGCCCTGAACGAGGACGGCGTCTACTGCTCCCTCCTC
ACAGGCCAGGAGAAGAGACTCGTGCCCTTTTCTGACCATACCAGCGCCAC
GGTTGAGATGTGTAATCTGCACCAGGACTACGATGTGGCTGTGGTGGACG
AGATTCAGATGATCGGAGACCCGGAACGAGGCCACGCCTGGACACGCGCC
CTTCTGGGTCTGCGTGCTAAGGAGATCCACCTCTGCGGGGGGCCCGAGGC
CAGGGACGTCGTCACCCGCCTCTGCCAGGCCACAGGGGACGAGCTCGAGT
TCAGGAATTACGAGCGCATGACGGAGCTCAAGGTCGCTGAGGACCCGCTG
TTGGACTACTCCCAGGTGCAAGCCGGAGACTGCATTGTGGCCTTCAACAA
GTCCGACATCTGCTCCATCAAGCAAGAGATCGAGGCCAAGACGCGGCACA
AGTGCTGCATGGTCTACGGCTCGCTCCCCTCGGAGACACGCTCGGCCCAG
GCGCGGATCTTTAACGAAGAAGGGACGGGCTACGACGTGCTGGTGGCCAG
CGATGCCATCGGTATGGGCCTTAACCTTAACATCAAGCGCATCATTTTTC
ACTCCCTCATCAAGGGCTCTGACGACGGCGGCGCCGAAGTCCTGCACTCC
GGCATGATCAAGCAAATCGCAGGACGTGCGGGTCGTCGTTCTTCCCGCTT
TCCTAACGGCGAGGTTACCTGCTATAAAAAAGAAGACATGCAGTTTCTAC
GCTCAGGCCTTGGCACGGCCACAGAGCAAATTGCTCGCGCCGGCCTCTTC
CCCACGGCCGAGCAGCTCGAAGACTTCTCGATCCTCCTCCAGACACAGGT
GGAGCGGGTCAGGAGCAGTGGGGGGATGCTGGAGGATGAGACGGGCCGAC
GCCGAGGACGAAAAGGCCGAGGTCAACTCGGAGCCTTAGACACCACGCTG
TTCTCGAAGGAGGGCGGCATGGAAGGCGGGAAGACGGAGGGGGAGGAGGA
GGGGACGGAGGAGGGGAAGGAGGAGGAGGAGGAGGAGGGCTTGGGGCTGA
TGGAGGTGATGGATTCCTTCTTCAACATGGCCGAGGTGTCGGACACGTAC
CATATGTGCCGATCTCGGTCCATGGCCTCCATTGCCTCCTACCTCGCCCA
GGTCAAGCCCCTCACTATCGCCGAGCGCTACACCCTCTGCTCCGTGCCCA
TCAACACCCGGGATCGCCTGGCCATGCAGATGCTCTACCAATTTGCCGCC
GCCCGCGCTGCCCGCCGCCCCATGCCCCTTTCCATCCGCCTGCCCGGCAA
ACCGCCCTCCACCCTCTACGGCATGAATGAGCTCTGCACGAAGCACTCTA
TCCTTGACGCCTACCTCTGGCTCTCGCACAAATTTCCCTCTACCTTCGTT
CAGGTGAAGTTTCTACCTCCCTTCGTCCCTCGTTTCCTTCCTCCCTCGCT
CTCGTCGTCGTTGTCGAGGCCATTCTATCGCTAATTTCAAACTCTTTCTT
TTCCTCCTTTTTTTCCTTCTCCTTTTTTTTCCTTCCCTCCTACAGCGCGA
GTCCGCCCTCCAGATGCGAGTCAACTGCACGCGCATGCTCGAGCTCGGCC
TGAAGAGCGGCATGGTGGTACGTCCTTCCTCGCTCGTTGGCTCCCTTTTC
TTCCGATCTTCCCTTCATCTCCCTCCTGCCCCTTGTCCTTCCCCTGACAC
CCTTACCGTCCCTCTTTGCCCCCCTCCCCGCCTGCTGCAGGTGGAGCACT
CCCACGACGAGCGCGATGCCTACTTGCGGCGCCAGTTCGGCCTTAAGATG
GAAAAACTCTACGGCATTCCCTACGTGGCTCCTTTCCCTTCCCCCCCCCC
TCCCTCCCTTCCGGTTTCCATTCGCACCGAGGAGGATACAGGCGTGGAGA
ATGACGACGAGGAAGAGGAAGAGGAACGTCGGGAAGAAACAGAGGAGGAC
GAATCGGAACACACCCTCCTTTTGCAAGAGCGAGGGGAGGGAGGGTCGGA
AGGAGAGAAGGAGGGGGAAAAGGAAGAAAAGATGAGAAAGGAGACTGTCT
GGATCTACCCACGGCCGAGGGCAGCGGAGAAGGAGGGGAGTTTGAAAGAG
GGAGGGAAGAAGGGTGTGTTAAGCGCAGAAGAGGAAGATATTCTCAAGGG
GCTTTTCGATTTTCGGCTGGCGAGATTTCGGAGAGAGGTTCAGATGAGGA
ATCGGCTGGGAAAGGGGGCAGGGAAGGAGGTAAGGGGGGGAAGTGAGCTA
GGTAGGATCGGTGTGTGGGGGGGAGGGAAGGGGCGGGGGAGGAGTGAGGG
AAAGGGGGAGAAGGGGGAGGAAGGGGAGGTAAGGCGAAGGGAGGCGGCAG
GAGTTGGGAAGGCACGGGGGAGGGGAGAAGGGGGAGGAGAGCGGAGGGGC
CCGAAGCGAGTTTCGTCTGCAAGTTAAGCAATGCATGAGGATGAGACGAA
GGGAGGGAGGAGGAGAAGAAGGGAGGGAGGAGGGGAAGAAGATAGGAAAC
AGAAGCGATTCAAAGAAAGGTGATGGAGTCGATCTAGTTACAAAAGGGGA
AATCGAAGCAAGTAAAAGAACGACACGGGTCGACCGAATGTCAAGTAAGA
AATCAGACCATAAACTGGGTAAGTAGCTTATAAAGTGCCGGTCGTTTTGC
CTGCCTGTCTGCCTGCCCCTGCTTGTAGTCAGTCAGCTCTTCCTGCATTT
ACGCTTTGTCTATGTGGGAGAGACGAGCACGAGGTTAAGAACTAGGACGA
GGGATGGGATGTAGATAGCTATGAGGAGTAAAAAGGCTTGATAGCCGAGA
TCGAGGAAAAGGACAGCCCCCAACGGCACTGACAG

protein sequence of NO17G02990.3

>NO17G02990.3-protein ID=NO17G02990.3-protein|Name=NO17G02990.3|organism=Nannochloropsis oceanica|type=polypeptide|length=885bp
MLPSLRLVRRAQQQQQHFHLACLMDFTRQYAKIPVARVMAAATENSLRGG
RGGRTLSRGCVSSSSSGSSSMTQLPSPPPVSAMGVEQPENSLPTTAREEK
PTGLSSPPSSKGRIALEGGPEDGREDGRGGLPIVPYMGEKHMGRDYYSKR
FRLLVQHMVEGGPPAAMLEENEERWVGLPSFQWKMAVVNFMNEVFLRPKE
TLGDEYMRILHAFDDVPGSVLGAFHNAMDAWHAKVRRHSFTMSGDKPPLP
PLPLEFARVEQMLTPFILRRTSSASPPSLASSTAPSLASTDHAEGEAGQG
GREERLRHVAAMEEEERKEKKAMDLGQLVRVCDMRLPHDWYPYARLMRRK
IVYHGGPTNSGKTYHALQRLKAADPTKGGGLYLGPLRLLALEVYDALNED
GVYCSLLTGQEKRLVPFSDHTSATVEMCNLHQDYDVAVVDEIQMIGDPER
GHAWTRALLGLRAKEIHLCGGPEARDVVTRLCQATGDELEFRNYERMTEL
KVAEDPLLDYSQVQAGDCIVAFNKSDICSIKQEIEAKTRHKCCMVYGSLP
SETRSAQARIFNEEGTGYDVLVASDAIGMGLNLNIKRIIFHSLIKGSDDG
GAEVLHSGMIKQIAGRAGRRSSRFPNGEVTCYKKEDMQFLRSGLGTATEQ
IARAGLFPTAEQLEDFSILLQTQVERVRSSGGMLEDETGRRRGRKGRGQL
GALDTTLFSKEGGMEGGKTEGEEEGTEEGKEEEEEEGLGLMEVMDSFFNM
AEVSDTYHMCRSRSMASIASYLAQVKPLTIAERYTLCSVPINTRDRLAMQ
MLYQFAAARAARRPMPLSIRLPGKPPSTLYGMNELCTKHSILDAYLWLSH
KFPSTFVQVKFLPPFVPRFLPPSLSSSLSRPFYR*

mRNA from alignment at chr17:893240..900257-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO17G02990.3 ID=NO17G02990.3|Name=NO17G02990.3|organism=Nannochloropsis oceanica|type=mRNA|length=7018bp|location=Sequence derived from alignment at chr17:893240..900257- (Nannochloropsis oceanica)
ACAGGCTCGAGCAAGAAATAAACATCTACTTTGGGCACGCATGTTATTGC
CTTCGCTGTGCATCACCTAGTGCCACGAAAAGCCAGGTTGCGCTCCTCAA
CCACCACGCTCTTCACCTTCAATCTCGCAATGCTACCCTCCCTACGCCTC
GTCCGCCGCGCCCAGCAGCAACAGCAGCATTTCCACCTGGCCTGCTTGAT
GGATTTCACCAGGCAATACGCCAAAATTCCCGTTGCGCGTGTGATGGCAG
CGGCTACGGAGAATAGCTTAAGAGGTGGGAGGGGAGGGCGAACACTGTCG
CGGGGTTGTGTCTCGTCCTCGTCCTCAGGCTCCTCCTCGATGACACAACT
ACCATCACCACCACCAGTGTCGGCTATGGGCGTGGAGGTACATGGAAGAT
AGCGATGTGGATGGAAGAGGAGAAAGTAGAGACGAGAAACGGGTTGTAGT
CTCGTGTCGTGGAGGATGCTCTCGAAAGGAAGTCTTATGCTTCCTTACTG
GTCTCCCAATGCCCACCTTTTAAACTCTTCAATTTTCCTCTTTCATTTTT
CCGCTCACACAGCAGCCAGAAAATAGCCTCCCGACCACGGCCAGGGAGGA
GAAGCCCACTGGCCTCTCCTCTCCCCCGTCTTCTAAGGGTCGAATCGCCC
TGGAGGGAGGGCCGGAAGACGGGAGGGAGGACGGGCGCGGAGGATTGCCG
ATAGTCCCCTATATGGGAGAGAAACACATGGGCCGTGATTACTACTCGAA
GCGATTTCGGCTTTTGGTCCAGCACATGGTGGAGGGTGGGCCACCCGCCG
CGATGCTGGAGGAGAATGAGGAGGTGTGAAGGAAGGGAGAGAGGGTGGGT
AGCAGGGGAGGGAGGGACAATGTGTAGGAGGATGGAGATAGATGCTCCCG
TTCATCAGTCCATCTTGTTGGCTATCCCACTATTGTCTCAAAATCATCTC
ATCCTCCTTCCCTTGCTTTTTCCCTGCTCCCCTCCTCCCCCAGCGATGGG
TTGGCCTGCCCTCATTCCAGTGGAAGATGGCGGTTGTGAACTTCATGAAC
GAAGTCTTCCTCCGGCCCAAGGAAACTCTCGGGGACGAATACAGTGAGTG
GTTCCCTCCTAACCTCCCTCCACTCCTCTTTCCCCTCTGGCTGTCCTCAT
GTTCTTGTGTCTGTCTGTGCGTCACCCCACCGAAGACCCGCATCCATGCA
CTCGCCCCCCCCTCCCTCCCTCCCTCCCTCCCCCCTCCCTCCCTCCCTCC
CTTCTTTCACCTGCAGTGCGCATTCTTCATGCCTTCGACGACGTTCCTGG
CTCAGTCCTGGGGGCCTTCCACAACGCTATGGACGCTTGGCATGCTAAGG
TCCGGCGCCACAGCTTCACTATGAGTGGCGACAAACCGTACGCATCTCCC
CCTCCTCCCTCCTTCCCTCCCCCTCCCTTCTCCATTTCCTATTTCCTCCC
TCATTCCATCATCAACTCCTTGTCTGATGTACACACACACGCATCCATGT
AACATCAATTTGTATATATATGTTCTCTCCCTGTCGGGACAAGAGAGCGA
GGGGGGCCGCTGCTCTGCCTCGAAGGCCCAACCGCGTGTACACTCGCGCA
CCCTCATCCTTCTCTTCCCATGCTCCAACTCCCCTCCTTCCTCCTCCAGA
CCCCTCCCTCCCCTCCCCCTCGAGTTCGCCCGCGTGGAGCAGATGCTGAC
CCCCTTCATCCTCCGTCGCACCTCCTCCGCGTCCCCTCCCTCCCTCGCTT
CCTCCACCGCGCCGTCCCTGGCCTCGACCGACCACGCCGAGGGGGAAGCC
GGGCAGGGCGGGAGGGAGGAACGGTTGCGGCATGTGGCGGCGATGGAGGA
GGAGGAGAGGAAGGAGAAGAAGGCCATGGACTTGGGGCAGCTGGTGCGGG
TGTGCGACATGAGACTGCCGCACGATTGGTACCCATACGCTAGGTTGATG
CGCAGGAAAATCGTCTACCACGGAGGTGGGGGAGGGAGGGAGGAGCCTTT
GAGGTATCGCACATATCCATTGCTACGACACACCCGCGAGGGAAGAGCGG
CTGACGTTCTTCCAAAGCTCAGGGAGGGGTAGGGTCGCCAGATAAAACGA
CAATGAATGCTCACAAGATTTGCCCTTCCCCTCCCTCCCTCCCTCGAGCC
AGGCCCGACCAACTCGGGTAAGACCTACCATGCCCTCCAACGCCTCAAGG
CGGCCGATCCGACGAAGGGCGGAGGCCTCTATCTGGGTCCCCTGCGTCTC
CTCGCTCTGGAGGTGCGCCCTTCCCCTCCCTCCCTCCCTCCCTCTCTCCC
TCTCCCTCCTATGCTTGCCGCAGCAAGACACCATTTTCCATTTCTTTCCT
TCCACCTCCCTCCCTCTGATTTTCCTTCCTCTTCTCCGTATCCTTCTCTC
CCTTTCCCCCTCCCCCCTTCCCCTTCTCCCTCTCCCCACCCGCCAGGTGT
ATGACGCCCTGAACGAGGACGGCGTCTACTGCTCCCTCCTCACAGGCCAG
GAGAAGAGACTCGTGCCCTTTTCTGACCATACCAGCGCCACGGTAAGGGA
GGGACAGGGGCGAGGGAGGAAAGAGGAGGAAGGAACACGCGAGAGGGGGA
TAGCAGAGGGACGGGAGAGTAAGAGCAGCCGACACACGGATCTTCTTTCC
GCCCGCTCATCTCTCCCCCTCCCTCCCTCCCTCCCCCCCTCCCTCCCACC
CTCCCTCGATGGTGACAAGGTTGAGATGTGTAATCTGCACCAGGACTACG
ATGTGGCTGTGGTGGACGAGATTCAGATGATCGGAGACCCGGAACGAGGC
CACGCCTGGACACGGTACGTCCCCTCCTCCTTCCCTCCCTCCTGCCCCCC
CCCCCTCCCCCCTCGTTCAACCCACCGTCTCTTGTGCTTCGATTCGCCCT
GCTGCCCCTCTCCAGCGCCCTTCTGGGTCTGCGTGCTAAGGAGATCCACC
TCTGCGGGGGGCCCGAGGCCAGGGACGTCGTCACCCGCCTCTGCCAGGCC
ACAGGGGACGAGCTCGAGGTACGTCGTTTCCCTCCCTCCCTTTCTCCCTC
TTCTCTTTCAGCCCTCATCATTTCCCTCCCTCCCTTCTCCCCTCCCAATC
CCCCAAACCTCCTCCCTCTCAGTTCAGGAATTACGAGCGCATGACGGAGC
TCAAGGTCGCTGAGGACCCGCTGTTGGACTACTCCCAGGTACTCCCTCCC
CCTCCCTTCCCTCCCTCCTTCCCTGCTTCCCTCGTTGTGGCCGTCACTCT
TGTTTGACAAATTCCGCGACCTCCCTGTCTCCCTCAGGTGCAAGCCGGAG
ACTGCATTGTGGCCTTCAACAAGTCCGACATCTGCTCCATCAAGCAAGAG
ATCGAGGCCAAGACGCGGTAGGTGCTCTCCCTCCCTCCCTCCCTCCCTTC
TTCCCCCCTCCCTCTTTCCCCCCTTTCCCCCTCATGGCGTGCTACTACAG
CAGTCTTTCTCCCCACATGACAAGGAAGGGAAGGCTGCAACATGACATTC
CTCATCATCGCCTCCTCTTCCTCCCTCCCTCCCTCCCCCCCTCCCTCCAG
GCACAAGTGCTGCATGGTCTACGGCTCGCTCCCCTCGGAGACACGCTCGG
CCCAGGCGCGGATCTTTAACGAAGAAGGGACGGGCTACGACGTGCTGGTG
GCCAGCGATGCCATCGGTATGGGCCTTAACCTTAACATCAAGTGCGTCCC
TGGCATCTCTCCCTCCTCCTTCCCTCCCTCCCCCCCTCCCTACATTTCCC
CTTTTCCACTTCTTTCTGCCAATAAGTCACTGCACCTCATGCCCGCTTTC
TTCCCTCCCTCTCTCCCTTGCTCCCTTCTAGGCGCATCATTTTTCACTCC
CTCATCAAGGGCTCTGACGACGGCGGCGCCGAAGTCCTGCACTCCGGTAC
GCCCTCCCTTCCTCCCTCCCTCCCTTCCTTCCTCGATCTCATCTTTCCGC
CCCCTCTTTTTGATCTCTCGCCTCTTCACCCTCTCCTCCTCTCCAACTAA
ATTTCCCTTTTTACCTTTCTCTTTTCCTATTATCTTTTTCCTGTCCTCCT
TCCCTCCTTCCTTCCTTCCTTCCCTCCCTCCTTCCTTCCTTCCCTCCCTC
CTTCCCTCCCCTCTCTTAGGCATGATCAAGCAAATCGCAGGACGTGCGGG
TCGTCGTTCTTCCCGCTTTCCTAACGGCGAGGTTACCTGCTATAAAAAAG
AAGACATGCAGTTTCTACGCTCAGGTAGGGCTCAAACCATCCTCCCTCTC
TCCCCCCTTCCCTCCCTTCTTCCCTCCCTTCTTCCCTTCCTTTCTTTCTC
CATCTACCGCATCGTTCTTCCCTTGTTTCGTATGACTCAACTCACCCACC
TCATCCTCCTCACCCTTCCTCCTTCTCTCCTTCCCCCTCTCCCTCTTCCC
AGGCCTTGGCACGGCCACAGAGCAAATTGCTCGCGCCGGCCTCTTCCCCA
CGGCCGAGCAGCTCGAAGACTTCTCGATCCTCCTCCAGACACAGGTAGGC
CTTTCCCTCCCTCGCCTTTCTTCTCCCCCCTTCTCTCCTTGCACTTCCCA
GCTATTTCCCCTTCCCCCTCCTGTCCCTCTTTTCAATTCGTCATAATCTT
TCTCTCTCCTTCCTTTCATCCCGTCCTCTCTTCCTCCCTCTTTTTTCGCA
GGTGGAGCGGGTCAGGAGCAGTGGGGGGATGCTGGAGGATGAGACGGGCC
GACGCCGAGGACGAAAAGGCCGAGGTCAACTCGGAGCCTTAGACACCACG
CTGTTCTCGAAGGAGGGCGGCATGGAAGGCGGGAAGACGGAGGGGGAGGA
GGAGGGGACGGAGGAGGGGAAGGAGGAGGAGGAGGAGGAGGGCTTGGGGC
TGATGGAGGTGATGGATTCCTTCTTCAACATGGCCGAGGTACGTCGTCGC
GCACTGAATGTCCCGAGAGAGTCACTTAAGCGCTCACACTCCCTCCTTTC
TTCCCTCCTTCCCTCCCTGCCTCTTTCTTTCCATCAATCGCTTCCTCACT
CAACAGTCTCTCCGCCCCCCCCCTCCCTCCCTCCCTCCCTCCCTCCCTCC
CTCCCTCCCTCCCAGGTGTCGGACACGTACCATATGTGCCGATCTCGGTC
CATGGCCTCCATTGCCTCCTACCTCGCCCAGGTCAAGCCCCTCACTATCG
CCGAGCGCTACACCCTCTGCTCCGTGCCCATCAACACCCGGGATCGCCTG
GCCATGCAGGTAGCCAGCTGTCTCTCCTTCCCCTCATCTCCTCCTAAACC
CCCTCACCAGCTTTTCCCTGGGCACCGAGCCAGATCGCCGCCGCCCGTGC
CGCCCTTCTCCCGTGCCCTCGTCCTTTATTCGCCGGCTCTCATCCTTTTC
CTCCCTCCCGCCCTTCCCTTCCTCCTCCCCTCCCCTTTTTCATTCACTGT
CTGTCTTCCTAGATGCTCTACCAATTTGCCGCCGCCCGCGCTGCCCGCCG
CCCCATGCCCCTTTCCATCCGCCTGCCCGGCAAACCGCCCTCCACCCTCT
ACGGCATGAATGAGCTCTGCACGAAGCACTCTATCCTTGACGCCTACCTC
TGGCTCTCGCACAAATTTCCCTCTACCTTCGTTCAGGTGAAGTTTCTACC
TCCCTTCGTCCCTCGTTTCCTTCCTCCCTCGCTCTCGTCGTCGTTGTCGA
GGCCATTCTATCGCTAATTTCAAACTCTTTCTTTTCCTCCTTTTTTTCCT
TCTCCTTTTTTTTCCTTCCCTCCTACAGCGCGAGTCCGCCCTCCAGATGC
GAGTCAACTGCACGCGCATGCTCGAGCTCGGCCTGAAGAGCGGCATGGTG
GTACGTCCTTCCTCGCTCGTTGGCTCCCTTTTCTTCCGATCTTCCCTTCA
TCTCCCTCCTGCCCCTTGTCCTTCCCCTGACACCCTTACCGTCCCTCTTT
GCCCCCCTCCCCGCCTGCTGCAGGTGGAGCACTCCCACGACGAGCGCGAT
GCCTACTTGCGGCGCCAGTTCGGCCTTAAGATGGAAAAACTCTACGGCAT
TCCCTACGTGGCTCCTTTCCCTTCCCCCCCCCCTCCCTCCCTTCCGGTTT
CCATTCGCACCGAGGAGGATACAGGCGTGGAGAATGACGACGAGGAAGAG
GAAGAGGAACGTCGGGAAGAAACAGAGGAGGACGAATCGGAACACACCCT
CCTTTTGCAAGAGCGAGGGGAGGGAGGGTCGGAAGGAGAGAAGGAGGGGG
AAAAGGAAGAAAAGATGAGAAAGGAGACTGTCTGGATCTACCCACGGCCG
AGGGCAGCGGAGAAGGAGGGGAGTTTGAAAGAGGGAGGGAAGAAGGGTGT
GTTAAGCGCAGAAGAGGAAGATATTCTCAAGGGGCTTTTCGATTTTCGGC
TGGCGAGATTTCGGAGAGAGGTTCAGATGAGGAATCGGCTGGGAAAGGGG
GCAGGGAAGGAGGTAAGGGGGGGAAGTGAGCTAGGTAGGATCGGTGTGTG
GGGGGGAGGGAAGGGGCGGGGGAGGAGTGAGGGAAAGGGGGAGAAGGGGG
AGGAAGGGGAGGTAAGGCGAAGGGAGGCGGCAGGAGTTGGGAAGGCACGG
GGGAGGGGAGAAGGGGGAGGAGAGCGGAGGGGCCCGAAGCGAGTTTCGTC
TGCAAGTTAAGCAATGCATGAGGATGAGACGAAGGGAGGGAGGAGGAGAA
GAAGGGAGGGAGGAGGGGAAGAAGATAGGAAACAGAAGCGATTCAAAGAA
AGGTGATGGAGTCGATCTAGTTACAAAAGGGGAAATCGAAGCAAGTAAAA
GAACGACACGGGTCGACCGAATGTCAAGTAAGAAATCAGACCATAAACTG
GGTAAGTAGCTTATAAAGTGCCGGTCGTTTTGCCTGCCTGTCTGCCTGCC
CCTGCTTGTAGTCAGTCAGCTCTTCCTGCATTTACGCTTTGTCTATGTGG
GAGAGACGAGCACGAGGTTAAGAACTAGGACGAGGGATGGGATGTAGATA
GCTATGAGGAGTAAAAAGGCTTGATAGCCGAGATCGAGGAAAAGGACAGC
CCCCAACGGCACTGACAG

Coding sequence (CDS) from alignment at chr17:893240..900257-

>NO17G02990.3 ID=NO17G02990.3|Name=NO17G02990.3|organism=Nannochloropsis oceanica|type=CDS|length=2655bp|location=Sequence derived from alignment at chr17:893240..900257- (Nannochloropsis oceanica)
ATGCTACCCTCCCTACGCCTCGTCCGCCGCGCCCAGCAGCAACAGCAGCA
TTTCCACCTGGCCTGCTTGATGGATTTCACCAGGCAATACGCCAAAATTC
CCGTTGCGCGTGTGATGGCAGCGGCTACGGAGAATAGCTTAAGAGGTGGG
AGGGGAGGGCGAACACTGTCGCGGGGTTGTGTCTCGTCCTCGTCCTCAGG
CTCCTCCTCGATGACACAACTACCATCACCACCACCAGTGTCGGCTATGG
GCGTGGAGCAGCCAGAAAATAGCCTCCCGACCACGGCCAGGGAGGAGAAG
CCCACTGGCCTCTCCTCTCCCCCGTCTTCTAAGGGTCGAATCGCCCTGGA
GGGAGGGCCGGAAGACGGGAGGGAGGACGGGCGCGGAGGATTGCCGATAG
TCCCCTATATGGGAGAGAAACACATGGGCCGTGATTACTACTCGAAGCGA
TTTCGGCTTTTGGTCCAGCACATGGTGGAGGGTGGGCCACCCGCCGCGAT
GCTGGAGGAGAATGAGGAGCGATGGGTTGGCCTGCCCTCATTCCAGTGGA
AGATGGCGGTTGTGAACTTCATGAACGAAGTCTTCCTCCGGCCCAAGGAA
ACTCTCGGGGACGAATACATGCGCATTCTTCATGCCTTCGACGACGTTCC
TGGCTCAGTCCTGGGGGCCTTCCACAACGCTATGGACGCTTGGCATGCTA
AGGTCCGGCGCCACAGCTTCACTATGAGTGGCGACAAACCACCCCTCCCT
CCCCTCCCCCTCGAGTTCGCCCGCGTGGAGCAGATGCTGACCCCCTTCAT
CCTCCGTCGCACCTCCTCCGCGTCCCCTCCCTCCCTCGCTTCCTCCACCG
CGCCGTCCCTGGCCTCGACCGACCACGCCGAGGGGGAAGCCGGGCAGGGC
GGGAGGGAGGAACGGTTGCGGCATGTGGCGGCGATGGAGGAGGAGGAGAG
GAAGGAGAAGAAGGCCATGGACTTGGGGCAGCTGGTGCGGGTGTGCGACA
TGAGACTGCCGCACGATTGGTACCCATACGCTAGGTTGATGCGCAGGAAA
ATCGTCTACCACGGAGGCCCGACCAACTCGGGTAAGACCTACCATGCCCT
CCAACGCCTCAAGGCGGCCGATCCGACGAAGGGCGGAGGCCTCTATCTGG
GTCCCCTGCGTCTCCTCGCTCTGGAGGTGTATGACGCCCTGAACGAGGAC
GGCGTCTACTGCTCCCTCCTCACAGGCCAGGAGAAGAGACTCGTGCCCTT
TTCTGACCATACCAGCGCCACGGTTGAGATGTGTAATCTGCACCAGGACT
ACGATGTGGCTGTGGTGGACGAGATTCAGATGATCGGAGACCCGGAACGA
GGCCACGCCTGGACACGCGCCCTTCTGGGTCTGCGTGCTAAGGAGATCCA
CCTCTGCGGGGGGCCCGAGGCCAGGGACGTCGTCACCCGCCTCTGCCAGG
CCACAGGGGACGAGCTCGAGTTCAGGAATTACGAGCGCATGACGGAGCTC
AAGGTCGCTGAGGACCCGCTGTTGGACTACTCCCAGGTGCAAGCCGGAGA
CTGCATTGTGGCCTTCAACAAGTCCGACATCTGCTCCATCAAGCAAGAGA
TCGAGGCCAAGACGCGGCACAAGTGCTGCATGGTCTACGGCTCGCTCCCC
TCGGAGACACGCTCGGCCCAGGCGCGGATCTTTAACGAAGAAGGGACGGG
CTACGACGTGCTGGTGGCCAGCGATGCCATCGGTATGGGCCTTAACCTTA
ACATCAAGCGCATCATTTTTCACTCCCTCATCAAGGGCTCTGACGACGGC
GGCGCCGAAGTCCTGCACTCCGGCATGATCAAGCAAATCGCAGGACGTGC
GGGTCGTCGTTCTTCCCGCTTTCCTAACGGCGAGGTTACCTGCTATAAAA
AAGAAGACATGCAGTTTCTACGCTCAGGCCTTGGCACGGCCACAGAGCAA
ATTGCTCGCGCCGGCCTCTTCCCCACGGCCGAGCAGCTCGAAGACTTCTC
GATCCTCCTCCAGACACAGGTGGAGCGGGTCAGGAGCAGTGGGGGGATGC
TGGAGGATGAGACGGGCCGACGCCGAGGACGAAAAGGCCGAGGTCAACTC
GGAGCCTTAGACACCACGCTGTTCTCGAAGGAGGGCGGCATGGAAGGCGG
GAAGACGGAGGGGGAGGAGGAGGGGACGGAGGAGGGGAAGGAGGAGGAGG
AGGAGGAGGGCTTGGGGCTGATGGAGGTGATGGATTCCTTCTTCAACATG
GCCGAGGTGTCGGACACGTACCATATGTGCCGATCTCGGTCCATGGCCTC
CATTGCCTCCTACCTCGCCCAGGTCAAGCCCCTCACTATCGCCGAGCGCT
ACACCCTCTGCTCCGTGCCCATCAACACCCGGGATCGCCTGGCCATGCAG
ATGCTCTACCAATTTGCCGCCGCCCGCGCTGCCCGCCGCCCCATGCCCCT
TTCCATCCGCCTGCCCGGCAAACCGCCCTCCACCCTCTACGGCATGAATG
AGCTCTGCACGAAGCACTCTATCCTTGACGCCTACCTCTGGCTCTCGCAC
AAATTTCCCTCTACCTTCGTTCAGGTGAAGTTTCTACCTCCCTTCGTCCC
TCGTTTCCTTCCTCCCTCGCTCTCGTCGTCGTTGTCGAGGCCATTCTATC
GCTAA

Synonyms

Publications