Alignments
The following features are aligned
Aligned Feature Feature Type Alignment Location
chr17 genome chr17:893240..900257 -
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO17G02990.2 vs.
Match: EWM24104.1 (atp-dependent rna helicase [Nannochloropsis gaditana])
HSP 1 Score: 1247.3 bits (3226), Expect = 0.000e+0
Identity = 677/960 (70.52%), Postives = 769/960 (80.10%), Query Frame = 0
Query: 2 GEKHMGRDYYSKRFRLLVQHMVEGGPPAAMLEENEERWVGLPSFQWKMAVVNFMNEVFLRPKETLGDEYMRILHAFDDVPGSVLGAFHNAMDAWHAKVRRHSFTMSGDKPPLPPLPLEFARVEQMLTPFILRRTSSASPPSLASSTAPSLASTD-HAEGEAGQ----GGREERLRHVAAMEEEERKEKKAMDLGQLVRVCDMRLPHDWYPYARLMRRKIVYHGGPTNSGKTYHALQRLKAADPTKGGGLYLGPLRLLALEVYDALNEDGVYCSLLTGQEKRLVPFSDHTSATVEMCNLHQDYDVAVVDEIQMIGDPERGHAWTRALLGLRAKEIHLCGGPEARDVVTRLCQATGDELEFRNYERMTELKVAEDPLLDYSQVQAGDCIVAFNKSDICSIKQEIEAKTRHKCCMVYGSLPSETRSAQARIFNEEGTGYDVLVASDAIGMGLNLNIKRIIFHSLIKGSDDGGAEVLHSGMIKQIAGRAGRRSSRFPNGEVTCYKKEDMQFLRSGLGTATEQIARAGLFPTAEQLEDFSILLQTQVERVRSSGGMLEDETGRRRGRKGRGQLGALDTTLFSKEGGME---GGKTE-GEEEGTEEGKE--EEEEEGLGLMEVMDSFFNMAEVSDTYHMCRSRSMASIASYLAQVKPLTIAERYTLCSVPINTRDRLAMQMLYQFAAARAARRPMPLSIRLPGKPPSTLYGMNELCTKHSILDAYLWLSHKFPSTFVQRESALQMRVNCTRMLELGLKSGMVVEHSHDERDAYLRRQFGLKMEKLYGIPYVAPFPSPPPPSLPVSIRTEEDTGVENDDEEEEEERREETEEDESEHTLLLQERGEGGSEGEKEGEKEEKMRKETVWIYPRPRAAEKEGSLKEGGKKGVLSAEEEDILKGLFDFRLARFRREVQMRNRLGKGAGKEVRGGSELGRIGVWGGGKGRGRSEGKGEKGEEGEVRRREAAG 951
GEKH+GRDYYSKRFRLLVQ+MVEGGPP AM EE E R GLPSFQWKMAVVNFMN+ FL P++TL DEY+ +LHA DDVPG+V+G+FHN DAWHAKVRRHS+TMSG+KP LPPLP EF RVE +L PFI+R ++A P S APSLA + E+G+ GG +R+ A ++ERK K LGQLVRVCDMRLPHDWYPYARLMRRKI+YH GPTNSGKTYHALQRLK ADP KGGGLYLGPLRLLALE+YD LNE+GVYCSLLTGQEKRL+PFSDHTSATVEMC+L QDYDVAV+DEIQMIGDPERGHAWTRALLGLRAKEIHLCGGPEA +VV+RLCQATGD+LE R YERMTEL +A +PLLDYS+V GDCIVAF+KSDICSIKQEIEAKT HKCCMVYGSLPSETRSAQARIFNEEGTG+DVLVA+DAIGMGLNLNI+RIIFHSLIK SD+GGAEVLHSGMIKQIAGRAGRRSSRFP GEVTCYK EDM+FLR GLGTATEQIARAGLFP+ EQLEDF+ LL++QV R++ S G L E GR + RK +G L + F+++ G+E G K E G+EE EEG++ EEEEEGLGLMEVMDSFFNMAEVSDTYHMCRSRSMASIASYLAQVKPL+IAERY L SVPI++RDR AMQMLYQFAAARAARRPMPLS+RLP PP+TL GMNELCTKHS+LDAYLWLSHKFPSTFVQRESALQMRV TRMLE GLK GM+VEHSH +RDA LR QF LKMEKL+GIPY P PS PP SIR EEDTG ENDDEEEEEER + ++DE+EH LL+ERGEG G + + + + R + ++ ++EG KG LS EEE++++GLF FRLARF +E++ + + GKE + E GR + G K K E E GE + A G
Sbjct: 133 GEKHLGRDYYSKRFRLLVQYMVEGGPPIAMREEMETRGDGLPSFQWKMAVVNFMNQAFLWPQDTLKDEYLPLLHALDDVPGAVMGSFHNTFDAWHAKVRRHSYTMSGEKPALPPLPPEFMRVEAILLPFIIRSLAAARPLS-----APSLAGVEGEGREESGEETKLGGERQRMGESTA--DKERKAMKDSGLGQLVRVCDMRLPHDWYPYARLMRRKIIYHAGPTNSGKTYHALQRLKMADPAKGGGLYLGPLRLLALEIYDTLNEEGVYCSLLTGQEKRLIPFSDHTSATVEMCSLRQDYDVAVLDEIQMIGDPERGHAWTRALLGLRAKEIHLCGGPEAVEVVSRLCQATGDDLEIRKYERMTELTIASEPLLDYSKVMVGDCIVAFSKSDICSIKQEIEAKTSHKCCMVYGSLPSETRSAQARIFNEEGTGFDVLVATDAIGMGLNLNIRRIIFHSLIKVSDEGGAEVLHSGMIKQIAGRAGRRSSRFPRGEVTCYKGEDMEFLRQGLGTATEQIARAGLFPSPEQLEDFASLLESQVGRIKGS-GELGGEEGRWQQRK-KGLSSPLHASFFARDIGLEMNRGKKEENGKEETGEEGQQTSEEEEEGLGLMEVMDSFFNMAEVSDTYHMCRSRSMASIASYLAQVKPLSIAERYILSSVPISSRDRFAMQMLYQFAAARAARRPMPLSVRLPASPPTTLLGMNELCTKHSVLDAYLWLSHKFPSTFVQRESALQMRVKLTRMLESGLKLGMLVEHSHHDRDARLRHQFALKMEKLHGIPYKPPAPSQIPP----SIRIEEDTGAENDDEEEEEERWRKEKDDEAEHAKLLEERGEGKENGTRGSVLDRQSQT------GRRKKSDAAVRVREG--KGFLSDEEEEVIRGLFAFRLARFHKELEAKRK-----GKERK--REQGRDLIDAGEK----YAHKPEVAEVGEAQTTAAEG 1060
The following BLAST results are available for this feature:
BLAST of NO17G02990.2 vs.
Analysis Date: 2017-10-25 (
Homology annotation for N. oceanica IMET1 )
Total hits: 1
500 1000 1500 2000 2500 3000 3500 4000 Expect = 0.00e+0 / Id = 70.52 Sequence EWM24104.1
Match Name E-value Identity Description
EWM24104.1 0.000e+0 70.52 atp-dependent rna helicase [Nannochloropsis gadita... [more]
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Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence
>NO17G02990.2 ID=NO17G02990.2|Name=NO17G02990.2|organism=Nannochloropsis oceanica|type=mRNA|length=4045bp back to top protein sequence of NO17G02990.2
>NO17G02990.2-protein ID=NO17G02990.2-protein|Name=NO17G02990.2|organism=Nannochloropsis oceanica|type=polypeptide|length=975bp back to top mRNA from alignment at chr17:893240..900257-
Legend: polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO17G02990.2 ID=NO17G02990.2|Name=NO17G02990.2|organism=Nannochloropsis oceanica|type=mRNA|length=7018bp|location=Sequence derived from alignment at chr17:893240..900257- (Nannochloropsis oceanica)ATGGGAGAGAAACACATGGGCCGTGATTACTACTCGAA
GCGATTTCGGCTTTTGGTCCAGCACATGGTGGAGGGTGGGCCACCCGCCG
CGATGCTGGAGGAGAATGAGGAG GTGTGAAGGAAGGGAGAGAGGGTGGGT
AGCAGGGGAGGGAGGGACAATGTGTAGGAGGATGGAGATAGATGCTCCCG
TTCATCAGTCCATCTTGTTGGCTATCCCACTATTGTCTCAAAATCATCTC
ATCCTCCTTCCCTTGCTTTTTCCCTGCTCCCCTCCTCCCCCAGCGATGGG
TTGGCCTGCCCTCATTCCAGTGGAAGATGGCGGTTGTGAACTTCATGAAC
GAAGTCTTCCTCCGGCCCAAGGAAACTCTCGGGGACGAATACA GTGAGTG
GTTCCCTCCTAACCTCCCTCCACTCCTCTTTCCCCTCTGGCTGTCCTCAT
GTTCTTGTGTCTGTCTGTGCGTCACCCCACCGAAGACCCGCATCCATGCA
CTCGCCCCCCCCTCCCTCCCTCCCTCCCTCCCCCCTCCCTCCCTCCCTCC
CTTCTTTCACCTGCAGTGCGCATTCTTCATGCCTTCGACGACGTTCCTGG
CTCAGTCCTGGGGGCCTTCCACAACGCTATGGACGCTTGGCATGCTAAGG
TCCGGCGCCACAGCTTCACTATGAGTGGCGACAAACC GTACGCATCTCCC
CCTCCTCCCTCCTTCCCTCCCCCTCCCTTCTCCATTTCCTATTTCCTCCC
TCATTCCATCATCAACTCCTTGTCTGATGTACACACACACGCATCCATGT
AACATCAATTTGTATATATATGTTCTCTCCCTGTCGGGACAAGAGAGCGA
GGGGGGCCGCTGCTCTGCCTCGAAGGCCCAACCGCGTGTACACTCGCGCA
CCCTCATCCTTCTCTTCCCATGCTCCAACTCCCCTCCTTCCTCCTCCAGA
CCCCTCCCTCCCCTCCCCCTCGAGTTCGCCCGCGTGGAGCAGATGCTGAC
CCCCTTCATCCTCCGTCGCACCTCCTCCGCGTCCCCTCCCTCCCTCGCTT
CCTCCACCGCGCCGTCCCTGGCCTCGACCGACCACGCCGAGGGGGAAGCC
GGGCAGGGCGGGAGGGAGGAACGGTTGCGGCATGTGGCGGCGATGGAGGA
GGAGGAGAGGAAGGAGAAGAAGGCCATGGACTTGGGGCAGCTGGTGCGGG
TGTGCGACATGAGACTGCCGCACGATTGGTACCCATACGCTAGGTTGATG
CGCAGGAAAATCGTCTACCACGGAG GTGGGGGAGGGAGGGAGGAGCCTTT
GAGGTATCGCACATATCCATTGCTACGACACACCCGCGAGGGAAGAGCGG
CTGACGTTCTTCCAAAGCTCAGGGAGGGGTAGGGTCGCCAGATAAAACGA
CAATGAATGCTCACAAGATTTGCCCTTCCCCTCCCTCCCTCCCTCGAGCC
AGGCCCGACCAACTCGGGTAAGACCTACCATGCCCTCCAACGCCTCAAGG
CGGCCGATCCGACGAAGGGCGGAGGCCTCTATCTGGGTCCCCTGCGTCTC
CTCGCTCTGGAG GTGCGCCCTTCCCCTCCCTCCCTCCCTCCCTCTCTCCC
TCTCCCTCCTATGCTTGCCGCAGCAAGACACCATTTTCCATTTCTTTCCT
TCCACCTCCCTCCCTCTGATTTTCCTTCCTCTTCTCCGTATCCTTCTCTC
CCTTTCCCCCTCCCCCCTTCCCCTTCTCCCTCTCCCCACCCGCCAGGTGT
ATGACGCCCTGAACGAGGACGGCGTCTACTGCTCCCTCCTCACAGGCCAG
GAGAAGAGACTCGTGCCCTTTTCTGACCATACCAGCGCCACG GTAAGGGA
GGGACAGGGGCGAGGGAGGAAAGAGGAGGAAGGAACACGCGAGAGGGGGA
TAGCAGAGGGACGGGAGAGTAAGAGCAGCCGACACACGGATCTTCTTTCC
GCCCGCTCATCTCTCCCCCTCCCTCCCTCCCTCCCCCCCTCCCTCCCACC
CTCCCTCGATGGTGACAAGGTTGAGATGTGTAATCTGCACCAGGACTACG
ATGTGGCTGTGGTGGACGAGATTCAGATGATCGGAGACCCGGAACGAGGC
CACGCCTGGACACG GTACGTCCCCTCCTCCTTCCCTCCCTCCTGCCCCCC
CCCCCTCCCCCCTCGTTCAACCCACCGTCTCTTGTGCTTCGATTCGCCCT
GCTGCCCCTCTCCAGCGCCCTTCTGGGTCTGCGTGCTAAGGAGATCCACC
TCTGCGGGGGGCCCGAGGCCAGGGACGTCGTCACCCGCCTCTGCCAGGCC
ACAGGGGACGAGCTCGAG GTACGTCGTTTCCCTCCCTCCCTTTCTCCCTC
TTCTCTTTCAGCCCTCATCATTTCCCTCCCTCCCTTCTCCCCTCCCAATC
CCCCAAACCTCCTCCCTCTCAGTTCAGGAATTACGAGCGCATGACGGAGC
TCAAGGTCGCTGAGGACCCGCTGTTGGACTACTCCCAG GTACTCCCTCCC
CCTCCCTTCCCTCCCTCCTTCCCTGCTTCCCTCGTTGTGGCCGTCACTCT
TGTTTGACAAATTCCGCGACCTCCCTGTCTCCCTCAGGTGCAAGCCGGAG
ACTGCATTGTGGCCTTCAACAAGTCCGACATCTGCTCCATCAAGCAAGAG
ATCGAGGCCAAGACGCG GTAGGTGCTCTCCCTCCCTCCCTCCCTCCCTTC
TTCCCCCCTCCCTCTTTCCCCCCTTTCCCCCTCATGGCGTGCTACTACAG
CAGTCTTTCTCCCCACATGACAAGGAAGGGAAGGCTGCAACATGACATTC
CTCATCATCGCCTCCTCTTCCTCCCTCCCTCCCTCCCCCCCTCCCTCCAG
GCACAAGTGCTGCATGGTCTACGGCTCGCTCCCCTCGGAGACACGCTCGG
CCCAGGCGCGGATCTTTAACGAAGAAGGGACGGGCTACGACGTGCTGGTG
GCCAGCGATGCCATCGGTATGGGCCTTAACCTTAACATCAA GTGCGTCCC
TGGCATCTCTCCCTCCTCCTTCCCTCCCTCCCCCCCTCCCTACATTTCCC
CTTTTCCACTTCTTTCTGCCAATAAGTCACTGCACCTCATGCCCGCTTTC
TTCCCTCCCTCTCTCCCTTGCTCCCTTCTAGGCGCATCATTTTTCACTCC
CTCATCAAGGGCTCTGACGACGGCGGCGCCGAAGTCCTGCACTCCG GTAC
GCCCTCCCTTCCTCCCTCCCTCCCTTCCTTCCTCGATCTCATCTTTCCGC
CCCCTCTTTTTGATCTCTCGCCTCTTCACCCTCTCCTCCTCTCCAACTAA
ATTTCCCTTTTTACCTTTCTCTTTTCCTATTATCTTTTTCCTGTCCTCCT
TCCCTCCTTCCTTCCTTCCTTCCCTCCCTCCTTCCTTCCTTCCCTCCCTC
CTTCCCTCCCCTCTCTTAGGCATGATCAAGCAAATCGCAGGACGTGCGGG
TCGTCGTTCTTCCCGCTTTCCTAACGGCGAGGTTACCTGCTATAAAAAAG
AAGACATGCAGTTTCTACGCTCAG GTAGGGCTCAAACCATCCTCCCTCTC
TCCCCCCTTCCCTCCCTTCTTCCCTCCCTTCTTCCCTTCCTTTCTTTCTC
CATCTACCGCATCGTTCTTCCCTTGTTTCGTATGACTCAACTCACCCACC
TCATCCTCCTCACCCTTCCTCCTTCTCTCCTTCCCCCTCTCCCTCTTCCC
AGGCCTTGGCACGGCCACAGAGCAAATTGCTCGCGCCGGCCTCTTCCCCA
CGGCCGAGCAGCTCGAAGACTTCTCGATCCTCCTCCAGACACAG GTAGGC
CTTTCCCTCCCTCGCCTTTCTTCTCCCCCCTTCTCTCCTTGCACTTCCCA
GCTATTTCCCCTTCCCCCTCCTGTCCCTCTTTTCAATTCGTCATAATCTT
TCTCTCTCCTTCCTTTCATCCCGTCCTCTCTTCCTCCCTCTTTTTTCGCA
GGTGGAGCGGGTCAGGAGCAGTGGGGGGATGCTGGAGGATGAGACGGGCC
GACGCCGAGGACGAAAAGGCCGAGGTCAACTCGGAGCCTTAGACACCACG
CTGTTCTCGAAGGAGGGCGGCATGGAAGGCGGGAAGACGGAGGGGGAGGA
GGAGGGGACGGAGGAGGGGAAGGAGGAGGAGGAGGAGGAGGGCTTGGGGC
TGATGGAGGTGATGGATTCCTTCTTCAACATGGCCGAG GTACGTCGTCGC
GCACTGAATGTCCCGAGAGAGTCACTTAAGCGCTCACACTCCCTCCTTTC
TTCCCTCCTTCCCTCCCTGCCTCTTTCTTTCCATCAATCGCTTCCTCACT
CAACAGTCTCTCCGCCCCCCCCCTCCCTCCCTCCCTCCCTCCCTCCCTCC
CTCCCTCCCTCCCAGGTGTCGGACACGTACCATATGTGCCGATCTCGGTC
CATGGCCTCCATTGCCTCCTACCTCGCCCAGGTCAAGCCCCTCACTATCG
CCGAGCGCTACACCCTCTGCTCCGTGCCCATCAACACCCGGGATCGCCTG
GCCATGCAG GTAGCCAGCTGTCTCTCCTTCCCCTCATCTCCTCCTAAACC
CCCTCACCAGCTTTTCCCTGGGCACCGAGCCAGATCGCCGCCGCCCGTGC
CGCCCTTCTCCCGTGCCCTCGTCCTTTATTCGCCGGCTCTCATCCTTTTC
CTCCCTCCCGCCCTTCCCTTCCTCCTCCCCTCCCCTTTTTCATTCACTGT
CTGTCTTCCTAGATGCTCTACCAATTTGCCGCCGCCCGCGCTGCCCGCCG
CCCCATGCCCCTTTCCATCCGCCTGCCCGGCAAACCGCCCTCCACCCTCT
ACGGCATGAATGAGCTCTGCACGAAGCACTCTATCCTTGACGCCTACCTC
TGGCTCTCGCACAAATTTCCCTCTACCTTCGTTCAG GTGAAGTTTCTACC
TCCCTTCGTCCCTCGTTTCCTTCCTCCCTCGCTCTCGTCGTCGTTGTCGA
GGCCATTCTATCGCTAATTTCAAACTCTTTCTTTTCCTCCTTTTTTTCCT
TCTCCTTTTTTTTCCTTCCCTCCTACAGCGCGAGTCCGCCCTCCAGATGC
GAGTCAACTGCACGCGCATGCTCGAGCTCGGCCTGAAGAGCGGCATGGTG
GTACGTCCTTCCTCGCTCGTTGGCTCCCTTTTCTTCCGATCTTCCCTTCA
TCTCCCTCCTGCCCCTTGTCCTTCCCCTGACACCCTTACCGTCCCTCTTT
GCCCCCCTCCCCGCCTGCTGCAGGTGGAGCACTCCCACGACGAGCGCGAT
GCCTACTTGCGGCGCCAGTTCGGCCTTAAGATGGAAAAACTCTACGGCAT
TCCCTACGTGGCTCCTTTCCCTTCCCCCCCCCCTCCCTCCCTTCCGGTTT
CCATTCGCACCGAGGAGGATACAGGCGTGGAGAATGACGACGAGGAAGAG
GAAGAGGAACGTCGGGAAGAAACAGAGGAGGACGAATCGGAACACACCCT
CCTTTTGCAAGAGCGAGGGGAGGGAGGGTCGGAAGGAGAGAAGGAGGGGG
AAAAGGAAGAAAAGATGAGAAAGGAGACTGTCTGGATCTACCCACGGCCG
AGGGCAGCGGAGAAGGAGGGGAGTTTGAAAGAGGGAGGGAAGAAGGGTGT
GTTAAGCGCAGAAGAGGAAGATATTCTCAAGGGGCTTTTCGATTTTCGGC
TGGCGAGATTTCGGAGAGAGGTTCAGATGAGGAATCGGCTGGGAAAGGGG
GCAGGGAAGGAGGTAAGGGGGGGAAGTGAGCTAGGTAGGATCGGTGTGTG
GGGGGGAGGGAAGGGGCGGGGGAGGAGTGAGGGAAAGGGGGAGAAGGGGG
AGGAAGGGGAGGTAAGGCGAAGGGAGGCGGCAGGAGTTGGGAAGGCACGG
GGGAGGGGAGAAGGGGGAGGAGAGCGGAGGGGCCCGAAGCGAGTTTCGTC
TGCAAGTTAA back to top Coding sequence (CDS) from alignment at chr17:893240..900257-
>NO17G02990.2 ID=NO17G02990.2|Name=NO17G02990.2|organism=Nannochloropsis oceanica|type=CDS|length=2925bp|location=Sequence derived from alignment at chr17:893240..900257- (Nannochloropsis oceanica) back to top