NO17G02860.1, NO17G02860.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO17G02860.1
Unique NameNO17G02860.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length914
Alignment locationchr17:836522..838126 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr17genomechr17:836522..838126 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO17G02860.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO17G02860NO17G02860Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO17G02860.1NO17G02860.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO17G02860.1.cds1NO17G02860.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO17G02860.1.cds2NO17G02860.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO17G02860.1.cds3NO17G02860.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO17G02860.1.cds4NO17G02860.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO17G02860.1.cds5NO17G02860.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO17G02860.1 ID=NO17G02860.1|Name=NO17G02860.1|organism=Nannochloropsis oceanica|type=mRNA|length=914bp
CTTCAATTTAACTGTCGGACTGGTCGATGATTGATCCTCTGCTGTACACA
CAAGCCATCATCTCAGTCCCGCCCCCTCCCTATGTTCCCCCCTTCCTCCT
TTCTTCCTTCCGCCCACCAGGGCCTGGCCATCCACGACAGCCGGCAGATG
GTTCCTTGCAAGTTTCTCCACCGGGGCAACTGCACCGGTCGGGTCCACAG
GAGGTTCCAACGGGCATTCCTGGAGCTCATGACCAAGTGCCAAGGCGCAG
TGGAGCAGATCAAACACAAGAAGCACATCTTCGTCACAGGCCACTCCCTG
GGAGGAGCATTAGCGCTCTTCTTCACGTTGCATCTGTGGAGGGACCTAGG
GATCTTACCAGCCATGAGCATCGGCTTTGCAGGACCTTTTATCGGTGATG
AGGACTTCACCGACGCCTACCAAGAGCCGCTTAAGCACCTCATGGGCGAC
CAGTGGTGGCAGGTAGAGACCGTCAACAAATACAACACCAGCGAATTCGA
TGGCACTGTGGAAGAATACAACATGGGCCAGGACGGACCTCAGATCTACA
TCGAGCGGGATGCCGTCTGTGGCGTGTATATCAAGCCACTGCCTGTCGAT
ACCAACCAGACCGCAAGCCCACACTACAGCTACGGTATGCACGACCTCAA
AAACTACAGACTTCTCTCCGACCAGGGGAAGGATTGCAGGGCCTTCTGAA
TAGCAGGAGGAGCAGGCGGAGCAGGAGGAGCAGGAGCAGGAGTTGCAGTA
CGCAGTGATAAGTGTGCGAGCCTCTCTATCTCTCCATTTACACATCTGCA
TACATGTACATACATGCAGATACACACGCACACATGCACAAACAAACACA
CATAGTATATATACATATGTATACACAAACACATATATATATATATGTAT
ATATATACATGTGT
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protein sequence of NO17G02860.1

>NO17G02860.1-protein ID=NO17G02860.1-protein|Name=NO17G02860.1|organism=Nannochloropsis oceanica|type=polypeptide|length=206bp
MFPPSSFLPSAHQGLAIHDSRQMVPCKFLHRGNCTGRVHRRFQRAFLELM
TKCQGAVEQIKHKKHIFVTGHSLGGALALFFTLHLWRDLGILPAMSIGFA
GPFIGDEDFTDAYQEPLKHLMGDQWWQVETVNKYNTSEFDGTVEEYNMGQ
DGPQIYIERDAVCGVYIKPLPVDTNQTASPHYSYGMHDLKNYRLLSDQGK
DCRAF*
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mRNA from alignment at chr17:836522..838126-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO17G02860.1 ID=NO17G02860.1|Name=NO17G02860.1|organism=Nannochloropsis oceanica|type=mRNA|length=1605bp|location=Sequence derived from alignment at chr17:836522..838126- (Nannochloropsis oceanica)
CTTCAATTTAACTGTCGGACTGGTCGATGATTGATCCTCTGCTGTACACA
CAAGCCATCATCTCAGTCCCGCCCCCTCCCTATGTTCCCCCCTTCCTCCT
TTCTTCCTTCCGCCCACCAGGGCCTGGCCATCCACGACAGCCGGCAGATG
GTTCCTTGCAAGTTTCTCCACCGGGGCAACTGCACCGGTCGGGTCCACAG
GAGGTTCCAACGGGCATTCCTGGAGGTAAGGAGAGCAAAGGAGGGTGAAC
GGAACATTCCACAAGCTTTTTGTTTTGGGAGGCATGATCGAGGGAGGTTG
AGGGGGAGGGAGCTAGTGCGTCTTCTTGTGCCAGTCCCCCCCCGTGTGAG
AGGGCCTTGCACTGCACGACATATTTGCATCCCGGGAGACTTACTCAAGC
TCAATCTCCCCCCCTTCCACCCTCCCCCTCTACTCCTCCCAAGCTCATGA
CCAAGTGCCAAGGCGCAGTGGAGCAGATCAAACACAAGAAGCACATCTTC
GTCACAGGCCACTCCCTGGGAGGAGCATTAGCGCTCTTCTTCACGTTGCA
TCTGTGGAGGGACCTAGGGATCTTACCAGCCATGAGCATCGGCTTTGCAG
GACCTTTTATCGGTGATGAGGACTTCACCGACGCCTACCAAGAGCCGCTT
AAGCACCTCATGGGCGACCAGTGGTGGCAGGCACGTATCTGACCCTCCCT
CCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCTTTCCTTC
CCCCTTCCCTTCCTTGCGTTCCTGGCCTCGGCCCTGTCATATTTCCTTCC
TCCATTTTCCCATATCTTTTTGTTCCCTCTCCTTCCTCTTAATCGACCAC
CCTTACAGGTAGAGACCGTCAACAAATACAACACCAGCGAATTCGATGGC
ACTGGTAAGTTCCCCCCCTCCCTCTCTCCATCCCTCCATCCTATTCTTTC
CTGATCAATAACGCCTCTCCCCCTCCCTCCCCCTTCCCTGTCCACCTCTT
TTCCCCTCTAGTGGAAGAATACAACATGGGCCAGGACGGACCTCAGATCT
ACATCGAGCGGGATGCCGTCTGTGGCGTGTATATCAAGCCACTGCCTGTC
GATACCAACCAGACCGCAAGCCCACACTACAGCTACGGTATGCACGACCT
CAAAAACTACAGGTAGGCGCATGCATGACCATTGTCGCACCCCTCATTTC
CTCCCTCCCTCCCTCCCTCCTTCTCCACCACCCTCTCCACAATTCTCGTT
TCTCCGTCTTCCCTTCCTCCCCATCCACTTTCCTGCCTCTGACCCTGCTA
TGGTCTTCCCCTGACTTTCTTCCTACCGCATCCCTGTCCCCTCGCCTCAG
ACTTCTCTCCGACCAGGGGAAGGATTGCAGGGCCTTCTGAATAGCAGGAG
GAGCAGGCGGAGCAGGAGGAGCAGGAGCAGGAGTTGCAGTACGCAGTGAT
AAGTGTGCGAGCCTCTCTATCTCTCCATTTACACATCTGCATACATGTAC
ATACATGCAGATACACACGCACACATGCACAAACAAACACACATAGTATA
TATACATATGTATACACAAACACATATATATATATATGTATATATATACA
TGTGT
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Coding sequence (CDS) from alignment at chr17:836522..838126-

>NO17G02860.1 ID=NO17G02860.1|Name=NO17G02860.1|organism=Nannochloropsis oceanica|type=CDS|length=618bp|location=Sequence derived from alignment at chr17:836522..838126- (Nannochloropsis oceanica)
ATGTTCCCCCCTTCCTCCTTTCTTCCTTCCGCCCACCAGGGCCTGGCCAT
CCACGACAGCCGGCAGATGGTTCCTTGCAAGTTTCTCCACCGGGGCAACT
GCACCGGTCGGGTCCACAGGAGGTTCCAACGGGCATTCCTGGAGCTCATG
ACCAAGTGCCAAGGCGCAGTGGAGCAGATCAAACACAAGAAGCACATCTT
CGTCACAGGCCACTCCCTGGGAGGAGCATTAGCGCTCTTCTTCACGTTGC
ATCTGTGGAGGGACCTAGGGATCTTACCAGCCATGAGCATCGGCTTTGCA
GGACCTTTTATCGGTGATGAGGACTTCACCGACGCCTACCAAGAGCCGCT
TAAGCACCTCATGGGCGACCAGTGGTGGCAGGTAGAGACCGTCAACAAAT
ACAACACCAGCGAATTCGATGGCACTGTGGAAGAATACAACATGGGCCAG
GACGGACCTCAGATCTACATCGAGCGGGATGCCGTCTGTGGCGTGTATAT
CAAGCCACTGCCTGTCGATACCAACCAGACCGCAAGCCCACACTACAGCT
ACGGTATGCACGACCTCAAAAACTACAGACTTCTCTCCGACCAGGGGAAG
GATTGCAGGGCCTTCTGA
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Synonyms
Publications