NO17G02840.2, NO17G02840.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO17G02840.2
Unique NameNO17G02840.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2298
Alignment locationchr17:833438..836262 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr17genomechr17:833438..836262 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO17G02840.2 vs.
Match: EWM24117.1 (peptide methionine sulfoxide reductase [Nannochloropsis gaditana])

HSP 1 Score: 231.1 bits (588), Expect = 2.700e-57
Identity = 113/164 (68.90%), Postives = 137/164 (83.54%), Query Frame = 0 
Query:   18 LIIFSSSTLSASWTKDLADKAGAFLDSTLQMGQGMSGGGKPFGEAAAQILRNPVGSRAC--KGTGNDIQEVATFAAGCFWSVELSFQRVPGVLSTRVGYIGGHTPNPTYQDVCTGTTGHAEAVEIKFDPSIVSYPELLTVLWDRHDPTQKDRQGNDRGTQYRSA 180
            L+ +  +++SASW   +A+KAG FL+++LQMGQGM+ G KPFGE+AA+++     + +   K + +  QEVATFAAGCFWSVELSFQRVPGV STRVGY GG  P+P+Y++VCTG TGHAEAVEIKFDPSIV+YPELLTVLWDRHDPTQKDRQGNDRGTQYRSA
Sbjct:   34 LVHYVIASISASWAGQIAEKAGEFLENSLQMGQGMATG-KPFGESAAKVVSKVFSTESANVKASCSWGQEVATFAAGCFWSVELSFQRVPGVASTRVGYTGGSVPHPSYKEVCTGRTGHAEAVEIKFDPSIVTYPELLTVLWDRHDPTQKDRQGNDRGTQYRSA 196
The following BLAST results are available for this feature:
BLAST of NO17G02840.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24117.12.700e-5768.90peptide methionine sulfoxide reductase [Nannochlor... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO17G02840NO17G02840Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO17G02840.2NO17G02840.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO17G02840.2.cds1NO17G02840.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO17G02840.2.cds2NO17G02840.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO17G02840.2.cds3NO17G02840.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO17G02840.2 ID=NO17G02840.2|Name=NO17G02840.2|organism=Nannochloropsis oceanica|type=mRNA|length=2298bp
ACTGAGCCATTCATGTCAATATTTCTTTCCACTCTTTCGTCCACCACCCT
CATGTACATCTCCCTCTTCTCTTGTCCCTGTCCCTCCTCGTGCCACGTAC
TCTTGCCAGCAGTAGTACTTGGGTTGAGCCTCCACCCGCACGTGTAACCA
GGCCACGCCCATCCCACTTGTCGACACCCACACCAACTCCTCATTATCGA
CACCAACTTCTTCCCCATCCGCGTTTTTCTTGTGCATGCAGCTGTCCAGT
GTCACCTGTGCGACGCGCTGCAAGAGCGCGAGCTTTTGACTGGTAGGGAC
GGAGGGTGCACGAAGGTACGAGAGAAAGTGGCTGTAACTGCCCTTGTCGC
CTTGCCCCAGGTAACAAGGTACAACTAATGTGGCATCTCTTCCCAAGTTG
TCAAAGACACAGATGCTGTCTCCATTTTCCCCCTTGCCATTTTTCTTTTT
CTCCTCTCTCCATCTGTGCTGTCTCTCGAAGTATTCGCGAAAGGGATAAT
CATCCGCATCCTCTTGCGCTGCCATGCGCTCCAGGGCCGGAGATGCAAGA
AGCATGCACTCAAAGGGTATTTGTGTGTTGGTTAGAAGCCGATAAGAGAT
GGGCGGACACTCCCAAAATGCTGCGGCGAATGTACAGGCTTGTAAAGCTT
CGAGGAGAAGAGTGGTCGCATGCGGCGTGCTGGGTGAAGACGAAGTGGAG
GAGGTGGTGTTGGTGGAGGAGGAGAAGGAGGATGCGGGTGCTGATGAGGG
GTGTGATGGTGAAGGAGAAGAAAAATACGATGATGAAGTAGGCGAAATGG
GCTTAGCCAGAGCTTGGAGTACATGGAGGAAGGACACGGGCGTGCCGGTG
GCTTCGTCAATGGCGACAAGACCATAATGCGTCGAGGAGTTGGACGATTG
GAAGATCATGGCAATGGCATTGATTAATGGCGCTGACTTAAAAAGAGGAC
GACAAATGGACGACGGGTGGCGGAAGTCGAGGAGACGCTCGACTACCACT
CTGGAACGGAGAGGGAGGGGGGTCGTGGACAACTTCTTGTTCTTTGGCGA
CGCTTTAGGTTGAGGCGATTAGCGTCTTGGCGAGCGCGGTGCGGCGTCAG
CTTGCACGGGCGCGTGGGACTTTGTTGCAGGTGCTCTGTGTATGGGTGTG
CGTGTGTGGAAAATAGAGACAGAGAGACAGAGAGAGAAAGGGGTGGGCAG
AATTGTAACCTCCTCACCCTCCCTTCCTCCTCCCAGATCGAACCTTTAGG
CGCAGCCCCACCCCACGACGTGCCAACTACTACCGCCAGCACCAGCACCA
GCACCAGCTATCGTGTATGTGCCATCGTTCGTCTTCTTCTCGTCTCATTT
TTCCCTCGCTTTTCGGGCTTATCATCTTTAGCAGCAGCACTCTATCCGCC
TCGTGGACCAAAGACTTGGCCGACAAAGCCGGTGCTTTCCTGGACAGCAC
GCTGCAAATGGGACAAGGCATGTCGGGCGGAGGAAAACCTTTCGGAGAGG
CGGCTGCACAAATCCTCCGCAACCCCGTGGGTAGCAGGGCGTGCAAGGGG
ACCGGAAATGATATACAGGAGGTTGCCACCTTTGCAGCAGGGTGTTTTTG
GTCTGTCGAACTCTCGTTCCAACGCGTCCCCGGGGTTTTGAGCACCCGCG
TCGGCTACATCGGGGGCCACACCCCCAACCCCACCTACCAAGATGTCTGT
ACAGGTACCACAGGTCACGCCGAAGCCGTCGAAATCAAGTTTGATCCCTC
TATAGTATCCTACCCGGAGCTCTTGACCGTGCTGTGGGACCGACACGACC
CCACGCAGAAAGACAGGCAGGGGAATGATAGAGGCACGCAGTACCGGTCG
GCGTGAGTAGGGGGGATGGAAGGGAGGGAGATGGCCACTTACGCTCGGGA
AGACAAGAGGACGTTCATGTGCAGGGAAGACAAATTGGAAATTGGAGAGG
CGCTCTCAGCAGAACTTCGCCTCCACCTTCACTCCTTCTCTCCTTCCCAC
CCTCACCTTCCCTCCCTCCCTTCCTCCCTCCTTCCCTCTCTTCCTCGCAA
AGTATCTTCTACCACTCCCTCGCCCAGAAGGAGCAGGCTGAGGCCAGCAT
CAAGGAGGACGAGAAACACCGTCTCTCACCGATTGTCACGCAGGTGGTGC
CCGCGACCACGTTTTACGAAGCAGAGGAGTACCACCAACAGTATCTTCAG
AAAGGAGGGCAATGCGCGCGTAAACAAGACCTGACGCCCATCCGGTGCTA
CGGTTAGGTGGGACGGAAGGGAGGGAGGAAGGGAGGAGGGGAGGGGGG
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protein sequence of NO17G02840.2

>NO17G02840.2-protein ID=NO17G02840.2-protein|Name=NO17G02840.2|organism=Nannochloropsis oceanica|type=polypeptide|length=180bp
MCHRSSSSRLIFPSLFGLIIFSSSTLSASWTKDLADKAGAFLDSTLQMGQ
GMSGGGKPFGEAAAQILRNPVGSRACKGTGNDIQEVATFAAGCFWSVELS
FQRVPGVLSTRVGYIGGHTPNPTYQDVCTGTTGHAEAVEIKFDPSIVSYP
ELLTVLWDRHDPTQKDRQGNDRGTQYRSA*
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mRNA from alignment at chr17:833438..836262+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO17G02840.2 ID=NO17G02840.2|Name=NO17G02840.2|organism=Nannochloropsis oceanica|type=mRNA|length=2825bp|location=Sequence derived from alignment at chr17:833438..836262+ (Nannochloropsis oceanica)
ACTGAGCCATTCATGTCAATATTTCTTTCCACTCTTTCGTCCACCACCCT
CATGTACATCTCCCTCTTCTCTTGTCCCTGTCCCTCCTCGTGCCACGTAC
TCTTGCCAGCAGTAGTACTTGGGTTGAGCCTCCACCCGCACGTGTAACCA
GGCCACGCCCATCCCACTTGTCGACACCCACACCAACTCCTCATTATCGA
CACCAACTTCTTCCCCATCCGCGTTTTTCTTGTGCATGCAGCTGTCCAGT
GTCACCTGTGCGACGCGCTGCAAGAGCGCGAGCTTTTGACTGGTAGGGAC
GGAGGGTGCACGAAGGTACGAGAGAAAGTGGCTGTAACTGCCCTTGTCGC
CTTGCCCCAGGTAACAAGGTACAACTAATGTGGCATCTCTTCCCAAGTTG
TCAAAGACACAGATGCTGTCTCCATTTTCCCCCTTGCCATTTTTCTTTTT
CTCCTCTCTCCATCTGTGCTGTCTCTCGAAGTATTCGCGAAAGGGATAAT
CATCCGCATCCTCTTGCGCTGCCATGCGCTCCAGGGCCGGAGATGCAAGA
AGCATGCACTCAAAGGGTATTTGTGTGTTGGTTAGAAGCCGATAAGAGAT
GGGCGGACACTCCCAAAATGCTGCGGCGAATGTACAGGCTTGTAAAGCTT
CGAGGAGAAGAGTGGTCGCATGCGGCGTGCTGGGTGAAGACGAAGTGGAG
GAGGTGGTGTTGGTGGAGGAGGAGAAGGAGGATGCGGGTGCTGATGAGGG
GTGTGATGGTGAAGGAGAAGAAAAATACGATGATGAAGTAGGCGAAATGG
GCTTAGCCAGAGCTTGGAGTACATGGAGGAAGGACACGGGCGTGCCGGTG
GCTTCGTCAATGGCGACAAGACCATAATGCGTCGAGGAGTTGGACGATTG
GAAGATCATGGCAATGGCATTGATTAATGGCGCTGACTTAAAAAGAGGAC
GACAAATGGACGACGGGTGGCGGAAGTCGAGGAGACGCTCGACTACCACT
CTGGAACGGAGAGGGAGGGGGGTCGTGGACAACTTCTTGTTCTTTGGCGA
CGCTTTAGGTTGAGGCGATTAGCGTCTTGGCGAGCGCGGTGCGGCGTCAG
CTTGCACGGGCGCGTGGGACTTTGTTGCAGGTGCTCTGTGTATGGGTGTG
CGTGTGTGGAAAATAGAGACAGAGAGACAGAGAGAGAAAGGGGTGGGCAG
AATTGTAACCTCCTCACCCTCCCTTCCTCCTCCCAGATCGAACCTTTAGG
CGCAGCCCCACCCCACGACGTGCCAACTACTACCGCCAGCACCAGCACCA
GCACCAGCTATCGTGTATGTGCCATCGTTCGTCTTCTTCTCGTCTCATTT
TTCCCTCGCTTTTCGGGCTTATCATCTTTAGCAGCAGCACTCTATCCGCC
TCGTGGACCAAAGACTTGGCCGACAAAGCCGGTGCTTTCCTGGACAGCAC
GCTGCAAATGGGACAAGGCATGTCGGGCGGAGGAAAACCTTTCGGAGAGG
CGGCTGCACAAATCCTCCGCAACCCCGTGGGTAGCAGGGCGTGCAAGGGG
ACCGGAAATGATATACAGGAGGTTGCCACCTTTGCAGCAGGGTGTTTTTG
GTCTGGTGGGTAGTTCTAGCGCTTTCCCGCTGGAACTCTTCTCCTCTCTC
TTTTTTTTCTCCCTTTCTCTTTCATTCATCTGTCTTGTCTCAGTATATGC
ACGCGGAATACGCTGGGCTGACGCATTTAAGTACGGCGTTAATCAATGCC
CATTCACCCTCTTTCCCTCCGTCCCCCCCCTCCCTCTCTTCCTCGCAGTC
GAACTCTCGTTCCAACGCGTCCCCGGGGTTTTGAGCACCCGCGTCGGCTA
CATCGGGGGCCACACCCCCAACCCCACCTACCAAGATGTCTGTACAGGTA
CCACAGGTCACGCCGAAGCCGTCGAAATCAAGTTTGATCCCTCTATAGGT
ACGAGGGAGGGAAGGAGGGAGGGAGGGAGGAAAGGAGGGAAGGGAGATGG
AAGTTAGGGAAGGGAGGGGGGGGAAAGACATGAAGACTGATAAGGAAAGT
AACGAAAATGCGCGGCCAACGCACTCATATACTCCCTCCTCTCCCTCGGT
TCTTTGGCAGTATCCTACCCGGAGCTCTTGACCGTGCTGTGGGACCGACA
CGACCCCACGCAGAAAGACAGGCAGGGGAATGATAGAGGCACGCAGTACC
GGTCGGCGTGAGTAGGGGGGATGGAAGGGAGGGAGATGGCCACTTACGCT
CGGGAAGACAAGAGGACGTTCATGTGCAGGGAAGACAAATTGGAAATTGG
AGAGGCGCTCTCAGCAGAACTTCGCCTCCACCTTCACTCCTTCTCTCCTT
CCCACCCTCACCTTCCCTCCCTCCCTTCCTCCCTCCTTCCCTCTCTTCCT
CGCAAAGTATCTTCTACCACTCCCTCGCCCAGAAGGAGCAGGCTGAGGCC
AGCATCAAGGAGGACGAGAAACACCGTCTCTCACCGATTGTCACGCAGGT
GGTGCCCGCGACCACGTTTTACGAAGCAGAGGTAGGGAGGGAGGGAGGGA
GGGAGGGAGGGAGGGAGGGAGGGACGGTAAGGGGGCGTTACTCTCTACTA
GCGAAAAGTGGAAAAGAAGGAGGTCTGAAAAGGCAGGAGGAAAGGCGCCA
AGGGCTCAATACATCTTCCCTCTTTTCCTCCCTCCCTCACTCCCTCCCTC
TAGGAGTACCACCAACAGTATCTTCAGAAAGGAGGGCAATGCGCGCGTAA
ACAAGACCTGACGCCCATCCGGTGCTACGGTTAGGTGGGACGGAAGGGAG
GGAGGAAGGGAGGAGGGGAGGGGGG
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Coding sequence (CDS) from alignment at chr17:833438..836262+

>NO17G02840.2 ID=NO17G02840.2|Name=NO17G02840.2|organism=Nannochloropsis oceanica|type=CDS|length=540bp|location=Sequence derived from alignment at chr17:833438..836262+ (Nannochloropsis oceanica)
ATGTGCCATCGTTCGTCTTCTTCTCGTCTCATTTTTCCCTCGCTTTTCGG
GCTTATCATCTTTAGCAGCAGCACTCTATCCGCCTCGTGGACCAAAGACT
TGGCCGACAAAGCCGGTGCTTTCCTGGACAGCACGCTGCAAATGGGACAA
GGCATGTCGGGCGGAGGAAAACCTTTCGGAGAGGCGGCTGCACAAATCCT
CCGCAACCCCGTGGGTAGCAGGGCGTGCAAGGGGACCGGAAATGATATAC
AGGAGGTTGCCACCTTTGCAGCAGGGTGTTTTTGGTCTGTCGAACTCTCG
TTCCAACGCGTCCCCGGGGTTTTGAGCACCCGCGTCGGCTACATCGGGGG
CCACACCCCCAACCCCACCTACCAAGATGTCTGTACAGGTACCACAGGTC
ACGCCGAAGCCGTCGAAATCAAGTTTGATCCCTCTATAGTATCCTACCCG
GAGCTCTTGACCGTGCTGTGGGACCGACACGACCCCACGCAGAAAGACAG
GCAGGGGAATGATAGAGGCACGCAGTACCGGTCGGCGTGA
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Synonyms
Publications