NO17G02760.1, NO17G02760.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO17G02760.1
Unique NameNO17G02760.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1467
Alignment locationchr17:805589..807276 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr17genomechr17:805589..807276 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO17G02760.1 vs.
Match: CBN74029.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 261.2 bits (666), Expect = 5.900e-66
Identity = 159/346 (45.95%), Postives = 208/346 (60.12%), Query Frame = 0 
Query:   17 RRWIHDMEAVSCRGCRAPFTSLARRKHHCRACGRVFCLACTRHKLFIPPADVIRPRKTPAAAVIPL-NLDPYLPQRVCDTCASLLLPLQPALRLTSSKATQALHIDRRSWARYFNHPVQFSLGEEIKKASYTLCNFTGDSALGGRDSIPGELLWGAKGLAFLTVVKAGIGRGGGGGGRGGGREGRRRRRRRRRGRVRWSAPSALGCTGVGYGFSFGVEVTDLLVILSSQEAVNAFSTRAQISLGTELGIALGPLGRTAATDLHYSSSSSSSSSSRRRRSRLGAGFSYGHSRGAFMGVSVEGSVLTARERVNQEFYGMKDVTVGGILSGEIPPPLAAFPLYKALEEV 362
            +RW+ D EA  C  C   F  +  R+HHCR CGRV C ACT +K  +P  DV+ P   P+ A + L + DP   QRVC  C  +L PLQ  L+LT + A    H  R S  RY N PV F L  EI KAS TL NFTGD+ + G DSIP +L+  A+GLAF+T VKAG+      G       G    RR   G   WSAPSALG  G+G+GF  G E+TD++++L++  AV AF+   Q+SLGTEL +++GP+GRTA+TD+            R     + A FSY HS+G F+GVS+E + +  R+  N++FYG K V+   +L G+ PPP AA PLYKALEEV
Sbjct:    6 KRWVPDEEASRCFLCSCSF-DVTTRRHHCRCCGRVACAACTPNKALVPLNDVVYP---PSDASMSLADFDPREAQRVCRECEHVLAPLQADLQLTMTHAAMPTHHSRASVERYLNSPVTFDLTGEILKASNTLLNFTGDNVIEGADSIPQDLIADARGLAFITFVKAGLFVTARVG------TGLVVARRPDGG---WSAPSALGSFGLGWGFQVGGELTDVVIVLNTMSAVEAFTGTGQVSLGTELSLSVGPVGRTASTDI------------RAGDGGVAAAFSYAHSKGVFIGVSLEAATMVTRKDTNRDFYGTK-VSAQELLLGDFPPPKAAEPLYKALEEV 325
The following BLAST results are available for this feature:
BLAST of NO17G02760.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Position :
0
Zoom :
x 1
200400600800100012001400Expect = 5.90e-66 / Id = 45.95SequenceCBN74029.1
Match NameE-valueIdentityDescription
CBN74029.15.900e-6645.95conserved unknown protein [Ectocarpus siliculosus][more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO17G02760NO17G02760Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO17G02760.1NO17G02760.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO17G02760.1.cds1NO17G02760.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO17G02760.1.cds2NO17G02760.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO17G02760.1.cds3NO17G02760.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO17G02760.1 ID=NO17G02760.1|Name=NO17G02760.1|organism=Nannochloropsis oceanica|type=mRNA|length=1467bp
ATGAAGGAGCAGGCAGCAGACATCCCCACAGCACCACTACCACCACACCG
GCGATGGATCCACGATATGGAAGCCGTAAGCTGTCGGGGCTGCCGAGCGC
CATTCACTTCCCTCGCCCGTCGGAAGCACCACTGCCGGGCTTGCGGGCGC
GTCTTCTGCTTGGCATGCACACGACACAAACTCTTCATCCCGCCCGCCGA
CGTAATCCGTCCACGCAAAACCCCCGCCGCTGCCGTTATCCCGCTTAACC
TCGATCCTTATTTGCCCCAGCGCGTCTGCGACACTTGCGCCTCCCTCCTC
CTCCCCCTCCAACCTGCCCTCCGCCTCACCAGCAGCAAAGCCACACAAGC
CCTCCACATTGACCGTCGCTCTTGGGCAAGATATTTCAATCATCCCGTGC
AATTCTCACTGGGAGAAGAAATCAAAAAGGCCTCTTACACTCTGTGTAAT
TTTACGGGAGACAGTGCCTTGGGAGGGAGAGACAGCATTCCGGGAGAGCT
CTTGTGGGGAGCCAAGGGCCTGGCGTTTCTGACGGTGGTCAAGGCAGGCA
TAGGACGAGGAGGAGGAGGAGGAGGAAGGGGGGGAGGGAGGGAGGGAAGG
AGGAGGAGGAGGAGGAGGAGGAGGGGGAGGGTAAGGTGGTCGGCGCCGTC
GGCGTTGGGGTGCACGGGAGTGGGATACGGATTTTCGTTCGGAGTGGAAG
TGACGGATCTGCTCGTCATCCTCTCTTCCCAAGAAGCCGTCAATGCCTTC
TCTACCCGCGCACAAATCTCTCTCGGGACGGAGCTAGGGATCGCCCTCGG
TCCCCTGGGCCGCACCGCCGCCACTGACCTCCACTACAGCAGCAGCAGCA
GCAGCAGCAGCAGCAGCAGGAGGAGGAGGAGCAGGCTGGGAGCGGGGTTC
AGCTACGGCCATAGCAGAGGTGCTTTTATGGGGGTGTCAGTGGAGGGGTC
TGTACTAACGGCACGGGAAAGGGTAAACCAAGAGTTTTATGGAATGAAAG
ACGTGACGGTAGGAGGTATTTTAAGTGGGGAGATACCGCCACCATTGGCC
GCGTTTCCCTTGTATAAAGCCTTGGAAGAGGTGATGGGGGAGGGGGAGGG
AGGGAGGGAGGGAGGGAGGGAGGCGTGTGGTACGAGGTGGGACTCAAGGA
ACGGCATGCATGGGCAGCAACGATCCAAAACGGGGAGGGACGGAGGGGAG
GAGGGAAGGCAAGAGGAGGAGGAGGAGGATGATGGGGAGGATGAGGAGGT
GGGAGGGTTGTTGAGAGGGATGGGTGGGGAGATGATGACCTTTCAGGTAA
TGGGGGAGTAGTGGGAGGTGTGGGGGTGGAGGGAAAACGGGAGGAGGGGG
AGGACGAGGAAGACGAAGAGGAGGGGGAGAAGGACGAAGACGAAGAGGAG
AGGGAGAAGGAGGAAGGGGGCGTGTACAGAACACAGGAGGAAAAAACAAG
AAACATGCACCACAAGG
back to top

protein sequence of NO17G02760.1

>NO17G02760.1-protein ID=NO17G02760.1-protein|Name=NO17G02760.1|organism=Nannochloropsis oceanica|type=polypeptide|length=437bp
MKEQAADIPTAPLPPHRRWIHDMEAVSCRGCRAPFTSLARRKHHCRACGR
VFCLACTRHKLFIPPADVIRPRKTPAAAVIPLNLDPYLPQRVCDTCASLL
LPLQPALRLTSSKATQALHIDRRSWARYFNHPVQFSLGEEIKKASYTLCN
FTGDSALGGRDSIPGELLWGAKGLAFLTVVKAGIGRGGGGGGRGGGREGR
RRRRRRRRGRVRWSAPSALGCTGVGYGFSFGVEVTDLLVILSSQEAVNAF
STRAQISLGTELGIALGPLGRTAATDLHYSSSSSSSSSSRRRRSRLGAGF
SYGHSRGAFMGVSVEGSVLTARERVNQEFYGMKDVTVGGILSGEIPPPLA
AFPLYKALEEVMGEGEGGREGGREACGTRWDSRNGMHGQQRSKTGRDGGE
EGRQEEEEEDDGEDEEVGGLLRGMGGEMMTFQVMGE*
back to top

mRNA from alignment at chr17:805589..807276-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO17G02760.1 ID=NO17G02760.1|Name=NO17G02760.1|organism=Nannochloropsis oceanica|type=mRNA|length=1688bp|location=Sequence derived from alignment at chr17:805589..807276- (Nannochloropsis oceanica)
ATGAAGGAGCAGGCAGCAGACATCCCCACAGCACCACTACCACCACACCG
GCGATGGATCCACGATATGGAAGCCGTAAGCTGTCGGGGCTGCCGAGCGC
CATTCACTTCCCTCGCCCGTCGGAAGCACCACTGCCGGGCTTGCGGGCGC
GTCTTCTGCTTGGCATGCACACGACACAAACTCTTCATCCCGCCCGCCGA
CGTAATCCGTCCACGCAAAACCCCCGCCGCTGCCGTTATCCCGCTTAACC
TCGATCCTTATTTGCCCCAGCGCGTCTGCGACACTTGCGCCTCCCTCCTC
CTCCCCCTCCAACCTGCCCTCCGCCTCACCAGCAGCAAAGCCACACAAGC
CCTCCACATTGACCGTCGCTCTTGGGCAAGATATTTCAATCATCCCGTGC
AATTCTCACTGGGAGAAGAAATCAAAAAGGCCTCTTACACTCTGTGTAAT
TTTACGGGAGACAGTGCCTTGGGAGGGAGAGACAGCATTCCGGGAGAGCT
CTTGTGGGGAGCCAAGGGCCTGGCGTTTCTGACGGTGGTCAAGGCAGGCA
TGTTTGTCACGGCTCGAATAGGGACAGGGCTGGTGATTGCACGGTTGCAT
GACGAAGAGGACGAGGAGGAGGAGGAGGAGGAAGGGGGGGAGGGAGGGAG
GGAAGGAGGAGGAGGAGGAGGAGGAGGAGGGGGAGGGTAAGGTGGTCGGC
GCCGTCGGCGTTGGGGTGCACGGGAGTGGGATACGGATTTTCGTTCGGAG
TGGAAGTGGTACGTGTTTTGAATCAAAGATGTTGTTATTTTTTAGCTTTG
TGTTCACGTGTATTTCTGAGTGTTTGAAGTGTCCCTTCTTCCTAAGACGT
CGAACCCCCGCTGTTGGGGTGCAGTTCTTCTTACCCTCCCTCCGTTCTTC
CCTCCCTTCCCCCCCTCCTTCAGACGGATCTGCTCGTCATCCTCTCTTCC
CAAGAAGCCGTCAATGCCTTCTCTACCCGCGCACAAATCTCTCTCGGGAC
GGAGCTAGGGATCGCCCTCGGTCCCCTGGGCCGCACCGCCGCCACTGACC
TCCACTACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGGAGGAGGAGG
AGCAGGCTGGGAGCGGGGTTCAGCTACGGCCATAGCAGAGGTGCTTTTAT
GGGGGTGTCAGTGGAGGGGTCTGTACTAACGGCACGGGAAAGGGTAAACC
AAGAGTTTTATGGAATGAAAGACGTGACGGTAGGAGGTATTTTAAGTGGG
GAGATACCGCCACCATTGGCCGCGTTTCCCTTGTATAAAGCCTTGGAAGA
GGTGATGGGGGAGGGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGCGTGTG
GTACGAGGTGGGACTCAAGGAACGGCATGCATGGGCAGCAACGATCCAAA
ACGGGGAGGGACGGAGGGGAGGAGGGAAGGCAAGAGGAGGAGGAGGAGGA
TGATGGGGAGGATGAGGAGGTGGGAGGGTTGTTGAGAGGGATGGGTGGGG
AGATGATGACCTTTCAGGTAATGGGGGAGTAGTGGGAGGTGTGGGGGTGG
AGGGAAAACGGGAGGAGGGGGAGGACGAGGAAGACGAAGAGGAGGGGGAG
AAGGACGAAGACGAAGAGGAGAGGGAGAAGGAGGAAGGGGGCGTGTACAG
AACACAGGAGGAAAAAACAAGAAACATGCACCACAAGG
back to top

Coding sequence (CDS) from alignment at chr17:805589..807276-

>NO17G02760.1 ID=NO17G02760.1|Name=NO17G02760.1|organism=Nannochloropsis oceanica|type=CDS|length=1311bp|location=Sequence derived from alignment at chr17:805589..807276- (Nannochloropsis oceanica)
ATGAAGGAGCAGGCAGCAGACATCCCCACAGCACCACTACCACCACACCG
GCGATGGATCCACGATATGGAAGCCGTAAGCTGTCGGGGCTGCCGAGCGC
CATTCACTTCCCTCGCCCGTCGGAAGCACCACTGCCGGGCTTGCGGGCGC
GTCTTCTGCTTGGCATGCACACGACACAAACTCTTCATCCCGCCCGCCGA
CGTAATCCGTCCACGCAAAACCCCCGCCGCTGCCGTTATCCCGCTTAACC
TCGATCCTTATTTGCCCCAGCGCGTCTGCGACACTTGCGCCTCCCTCCTC
CTCCCCCTCCAACCTGCCCTCCGCCTCACCAGCAGCAAAGCCACACAAGC
CCTCCACATTGACCGTCGCTCTTGGGCAAGATATTTCAATCATCCCGTGC
AATTCTCACTGGGAGAAGAAATCAAAAAGGCCTCTTACACTCTGTGTAAT
TTTACGGGAGACAGTGCCTTGGGAGGGAGAGACAGCATTCCGGGAGAGCT
CTTGTGGGGAGCCAAGGGCCTGGCGTTTCTGACGGTGGTCAAGGCAGGCA
TAGGACGAGGAGGAGGAGGAGGAGGAAGGGGGGGAGGGAGGGAGGGAAGG
AGGAGGAGGAGGAGGAGGAGGAGGGGGAGGGTAAGGTGGTCGGCGCCGTC
GGCGTTGGGGTGCACGGGAGTGGGATACGGATTTTCGTTCGGAGTGGAAG
TGACGGATCTGCTCGTCATCCTCTCTTCCCAAGAAGCCGTCAATGCCTTC
TCTACCCGCGCACAAATCTCTCTCGGGACGGAGCTAGGGATCGCCCTCGG
TCCCCTGGGCCGCACCGCCGCCACTGACCTCCACTACAGCAGCAGCAGCA
GCAGCAGCAGCAGCAGCAGGAGGAGGAGGAGCAGGCTGGGAGCGGGGTTC
AGCTACGGCCATAGCAGAGGTGCTTTTATGGGGGTGTCAGTGGAGGGGTC
TGTACTAACGGCACGGGAAAGGGTAAACCAAGAGTTTTATGGAATGAAAG
ACGTGACGGTAGGAGGTATTTTAAGTGGGGAGATACCGCCACCATTGGCC
GCGTTTCCCTTGTATAAAGCCTTGGAAGAGGTGATGGGGGAGGGGGAGGG
AGGGAGGGAGGGAGGGAGGGAGGCGTGTGGTACGAGGTGGGACTCAAGGA
ACGGCATGCATGGGCAGCAACGATCCAAAACGGGGAGGGACGGAGGGGAG
GAGGGAAGGCAAGAGGAGGAGGAGGAGGATGATGGGGAGGATGAGGAGGT
GGGAGGGTTGTTGAGAGGGATGGGTGGGGAGATGATGACCTTTCAGGTAA
TGGGGGAGTAG
back to top
Synonyms
Publications