NO17G02740.1, NO17G02740.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO17G02740.1
Unique NameNO17G02740.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1353
Alignment locationchr17:802539..803891 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr17genomechr17:802539..803891 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO17G02740.1 vs.
Match: EWM24160.1 (queuine trna-ribosyltransferase [Nannochloropsis gaditana])

HSP 1 Score: 716.8 bits (1849), Expect = 4.100e-203
Identity = 359/448 (80.13%), Postives = 380/448 (84.82%), Query Frame = 0 
Query:    1 MPDETEVSPPPPISAPPLVEEGIPPTFTAASPALCFHIHARWRRARAATVHLPHGPLATPVFMPVGTKGTIKGIPTEQLLHPELSPQIILGNTYHLALQPGTDLLEEMGGLHKFMNWPRNLLTDSGGFQMVSLLALAEITEEGVTFQSPIDGTQMLLTPEMSIAHQNRIGSDIMMQLDDVVSSVTENDDRFREATARSIRWLDRCIQAHSRPQEQNLFGIIQGGLDTSPGGLREGCLREMIARDCPGYAIGGLAGGESKEAFWKVVAQSAAGLPEGKPRYLMGVGYPLDLVVCTALGVDMYDCVYPTRTARFGVALVGTGVLKLKNNACGNETGKPIEEGCQCMTCKNYSRAAIHRLLKSGALGCQLVTYHNLAYMLGLMRRMRKAIMEGGDAFPSFVLAFLKAHYS------GEIAGKKGEKVDVTVPEWVREALGVAGIEVPQTFQ 443
            M D      P     PPLV EG  P+FT ASPALCFHIHARWRRARAATVHLPHGPLATPVFMPVGTKGTIKGIPTEQLLH +LSPQIILGNTYHLALQPGT+LLEEMGGLH+FM WPRNLLTDSGGFQMVSLLALAEITEEGV FQSP+DGTQMLLTPEMSIAHQNRIGSDIMMQLDDVVSSVT +  RF EATARSIRWLDRC +AHSRP+EQNLFGIIQGGLDTSPGGLR+ CL  M+ARDCPGYAIGGLAGGESKEAFWKVVAQ  A LPEGKPRYLMGVGYPLDLVVCTALGVDMYDCVYPTRTARFGVAL   GVLKLKN AC  E  + I+  C CM C++YS+AA+HRLLKSGALGCQLVTYHNLAYMLGLMRRMR AIM+GG AFP FV+ FL  HY+      G    +KGE     VPEWVREAL VAGI+VP   Q
Sbjct:    1 MGDNDSTGAPSEPILPPLVPEGTSPSFTPASPALCFHIHARWRRARAATVHLPHGPLATPVFMPVGTKGTIKGIPTEQLLHEDLSPQIILGNTYHLALQPGTELLEEMGGLHEFMQWPRNLLTDSGGFQMVSLLALAEITEEGVRFQSPVDGTQMLLTPEMSIAHQNRIGSDIMMQLDDVVSSVTVDHARFVEATARSIRWLDRCRKAHSRPREQNLFGIIQGGLDTSPGGLRDECLTAMVARDCPGYAIGGLAGGESKEAFWKVVAQCTAALPEGKPRYLMGVGYPLDLVVCTALGVDMYDCVYPTRTARFGVALRDAGVLKLKNKACAGEEKQAIDPLCGCMVCRHYSQAALHRLLKSGALGCQLVTYHNLAYMLGLMRRMRSAIMQGGQAFPHFVVGFLTTHYAWKNREEGVECRRKGE--CGMVPEWVREALAVAGIDVPDQSQ 446
The following BLAST results are available for this feature:
BLAST of NO17G02740.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24160.14.100e-20380.13queuine trna-ribosyltransferase [Nannochloropsis g... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO17G02740NO17G02740Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO17G02740.1NO17G02740.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO17G02740.1.cds1NO17G02740.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO17G02740.1 ID=NO17G02740.1|Name=NO17G02740.1|organism=Nannochloropsis oceanica|type=mRNA|length=1353bp
ATGCCCGACGAGACCGAAGTGTCACCACCCCCACCAATTTCCGCACCACC
TCTCGTCGAGGAAGGTATCCCGCCCACATTCACGGCGGCCTCCCCTGCCC
TCTGCTTTCACATCCACGCTCGATGGCGACGCGCAAGGGCCGCCACCGTC
CACTTGCCCCACGGTCCCCTCGCGACGCCTGTCTTCATGCCCGTGGGCAC
CAAGGGCACAATTAAAGGCATCCCAACCGAACAATTACTCCATCCAGAAC
TTTCTCCTCAGATTATTCTGGGGAACACATACCACCTCGCCTTGCAGCCG
GGGACGGACCTGCTGGAGGAAATGGGGGGCTTGCACAAATTTATGAACTG
GCCTCGCAACCTCCTCACCGACTCGGGAGGATTCCAGATGGTCTCCCTCT
TGGCCTTGGCCGAGATCACGGAGGAAGGTGTGACGTTTCAAAGCCCTATC
GATGGGACGCAGATGCTGCTGACGCCTGAGATGTCCATTGCGCACCAAAA
CCGGATAGGGTCCGATATAATGATGCAGCTTGACGATGTCGTGTCTTCTG
TCACTGAGAACGACGACCGCTTCCGTGAAGCCACCGCGCGATCCATCCGG
TGGTTAGATCGGTGCATACAAGCACACTCTCGACCGCAAGAACAGAATCT
GTTCGGCATCATTCAGGGGGGGTTGGATACTTCCCCGGGCGGATTGCGGG
AAGGGTGCCTGCGCGAAATGATCGCCCGCGACTGTCCAGGTTACGCGATT
GGGGGTCTAGCGGGTGGAGAGAGCAAGGAAGCATTTTGGAAGGTGGTGGC
ACAGTCTGCCGCGGGTTTACCCGAGGGGAAACCGAGGTATTTGATGGGTG
TCGGCTATCCGCTAGACTTGGTGGTGTGCACGGCGTTGGGCGTGGATATG
TATGACTGTGTCTACCCCACTCGCACGGCCAGATTTGGCGTCGCGCTTGT
TGGAACGGGGGTTTTGAAGCTTAAGAACAACGCATGTGGGAATGAGACGG
GCAAACCTATCGAAGAGGGGTGTCAGTGCATGACGTGCAAGAACTACTCG
CGCGCAGCGATACACCGGTTGCTCAAGTCGGGAGCTCTGGGGTGTCAATT
AGTCACGTACCACAACCTCGCTTACATGCTCGGATTGATGCGAAGAATGC
GAAAGGCGATTATGGAGGGAGGAGACGCTTTTCCTAGCTTTGTATTGGCG
TTTTTGAAAGCTCACTATTCTGGTGAGATTGCTGGGAAGAAAGGAGAAAA
AGTAGATGTGACAGTGCCTGAGTGGGTGAGGGAAGCGCTGGGTGTAGCGG
GCATTGAAGTGCCACAGACATTTCAGAGTGAGGGAGAAATTGAAAAAGAT
TAG
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protein sequence of NO17G02740.1

>NO17G02740.1-protein ID=NO17G02740.1-protein|Name=NO17G02740.1|organism=Nannochloropsis oceanica|type=polypeptide|length=451bp
MPDETEVSPPPPISAPPLVEEGIPPTFTAASPALCFHIHARWRRARAATV
HLPHGPLATPVFMPVGTKGTIKGIPTEQLLHPELSPQIILGNTYHLALQP
GTDLLEEMGGLHKFMNWPRNLLTDSGGFQMVSLLALAEITEEGVTFQSPI
DGTQMLLTPEMSIAHQNRIGSDIMMQLDDVVSSVTENDDRFREATARSIR
WLDRCIQAHSRPQEQNLFGIIQGGLDTSPGGLREGCLREMIARDCPGYAI
GGLAGGESKEAFWKVVAQSAAGLPEGKPRYLMGVGYPLDLVVCTALGVDM
YDCVYPTRTARFGVALVGTGVLKLKNNACGNETGKPIEEGCQCMTCKNYS
RAAIHRLLKSGALGCQLVTYHNLAYMLGLMRRMRKAIMEGGDAFPSFVLA
FLKAHYSGEIAGKKGEKVDVTVPEWVREALGVAGIEVPQTFQSEGEIEKD
*
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mRNA from alignment at chr17:802539..803891+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO17G02740.1 ID=NO17G02740.1|Name=NO17G02740.1|organism=Nannochloropsis oceanica|type=mRNA|length=1353bp|location=Sequence derived from alignment at chr17:802539..803891+ (Nannochloropsis oceanica)
ATGCCCGACGAGACCGAAGTGTCACCACCCCCACCAATTTCCGCACCACC
TCTCGTCGAGGAAGGTATCCCGCCCACATTCACGGCGGCCTCCCCTGCCC
TCTGCTTTCACATCCACGCTCGATGGCGACGCGCAAGGGCCGCCACCGTC
CACTTGCCCCACGGTCCCCTCGCGACGCCTGTCTTCATGCCCGTGGGCAC
CAAGGGCACAATTAAAGGCATCCCAACCGAACAATTACTCCATCCAGAAC
TTTCTCCTCAGATTATTCTGGGGAACACATACCACCTCGCCTTGCAGCCG
GGGACGGACCTGCTGGAGGAAATGGGGGGCTTGCACAAATTTATGAACTG
GCCTCGCAACCTCCTCACCGACTCGGGAGGATTCCAGATGGTCTCCCTCT
TGGCCTTGGCCGAGATCACGGAGGAAGGTGTGACGTTTCAAAGCCCTATC
GATGGGACGCAGATGCTGCTGACGCCTGAGATGTCCATTGCGCACCAAAA
CCGGATAGGGTCCGATATAATGATGCAGCTTGACGATGTCGTGTCTTCTG
TCACTGAGAACGACGACCGCTTCCGTGAAGCCACCGCGCGATCCATCCGG
TGGTTAGATCGGTGCATACAAGCACACTCTCGACCGCAAGAACAGAATCT
GTTCGGCATCATTCAGGGGGGGTTGGATACTTCCCCGGGCGGATTGCGGG
AAGGGTGCCTGCGCGAAATGATCGCCCGCGACTGTCCAGGTTACGCGATT
GGGGGTCTAGCGGGTGGAGAGAGCAAGGAAGCATTTTGGAAGGTGGTGGC
ACAGTCTGCCGCGGGTTTACCCGAGGGGAAACCGAGGTATTTGATGGGTG
TCGGCTATCCGCTAGACTTGGTGGTGTGCACGGCGTTGGGCGTGGATATG
TATGACTGTGTCTACCCCACTCGCACGGCCAGATTTGGCGTCGCGCTTGT
TGGAACGGGGGTTTTGAAGCTTAAGAACAACGCATGTGGGAATGAGACGG
GCAAACCTATCGAAGAGGGGTGTCAGTGCATGACGTGCAAGAACTACTCG
CGCGCAGCGATACACCGGTTGCTCAAGTCGGGAGCTCTGGGGTGTCAATT
AGTCACGTACCACAACCTCGCTTACATGCTCGGATTGATGCGAAGAATGC
GAAAGGCGATTATGGAGGGAGGAGACGCTTTTCCTAGCTTTGTATTGGCG
TTTTTGAAAGCTCACTATTCTGGTGAGATTGCTGGGAAGAAAGGAGAAAA
AGTAGATGTGACAGTGCCTGAGTGGGTGAGGGAAGCGCTGGGTGTAGCGG
GCATTGAAGTGCCACAGACATTTCAGAGTGAGGGAGAAATTGAAAAAGAT
TAG
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Coding sequence (CDS) from alignment at chr17:802539..803891+

>NO17G02740.1 ID=NO17G02740.1|Name=NO17G02740.1|organism=Nannochloropsis oceanica|type=CDS|length=1353bp|location=Sequence derived from alignment at chr17:802539..803891+ (Nannochloropsis oceanica)
ATGCCCGACGAGACCGAAGTGTCACCACCCCCACCAATTTCCGCACCACC
TCTCGTCGAGGAAGGTATCCCGCCCACATTCACGGCGGCCTCCCCTGCCC
TCTGCTTTCACATCCACGCTCGATGGCGACGCGCAAGGGCCGCCACCGTC
CACTTGCCCCACGGTCCCCTCGCGACGCCTGTCTTCATGCCCGTGGGCAC
CAAGGGCACAATTAAAGGCATCCCAACCGAACAATTACTCCATCCAGAAC
TTTCTCCTCAGATTATTCTGGGGAACACATACCACCTCGCCTTGCAGCCG
GGGACGGACCTGCTGGAGGAAATGGGGGGCTTGCACAAATTTATGAACTG
GCCTCGCAACCTCCTCACCGACTCGGGAGGATTCCAGATGGTCTCCCTCT
TGGCCTTGGCCGAGATCACGGAGGAAGGTGTGACGTTTCAAAGCCCTATC
GATGGGACGCAGATGCTGCTGACGCCTGAGATGTCCATTGCGCACCAAAA
CCGGATAGGGTCCGATATAATGATGCAGCTTGACGATGTCGTGTCTTCTG
TCACTGAGAACGACGACCGCTTCCGTGAAGCCACCGCGCGATCCATCCGG
TGGTTAGATCGGTGCATACAAGCACACTCTCGACCGCAAGAACAGAATCT
GTTCGGCATCATTCAGGGGGGGTTGGATACTTCCCCGGGCGGATTGCGGG
AAGGGTGCCTGCGCGAAATGATCGCCCGCGACTGTCCAGGTTACGCGATT
GGGGGTCTAGCGGGTGGAGAGAGCAAGGAAGCATTTTGGAAGGTGGTGGC
ACAGTCTGCCGCGGGTTTACCCGAGGGGAAACCGAGGTATTTGATGGGTG
TCGGCTATCCGCTAGACTTGGTGGTGTGCACGGCGTTGGGCGTGGATATG
TATGACTGTGTCTACCCCACTCGCACGGCCAGATTTGGCGTCGCGCTTGT
TGGAACGGGGGTTTTGAAGCTTAAGAACAACGCATGTGGGAATGAGACGG
GCAAACCTATCGAAGAGGGGTGTCAGTGCATGACGTGCAAGAACTACTCG
CGCGCAGCGATACACCGGTTGCTCAAGTCGGGAGCTCTGGGGTGTCAATT
AGTCACGTACCACAACCTCGCTTACATGCTCGGATTGATGCGAAGAATGC
GAAAGGCGATTATGGAGGGAGGAGACGCTTTTCCTAGCTTTGTATTGGCG
TTTTTGAAAGCTCACTATTCTGGTGAGATTGCTGGGAAGAAAGGAGAAAA
AGTAGATGTGACAGTGCCTGAGTGGGTGAGGGAAGCGCTGGGTGTAGCGG
GCATTGAAGTGCCACAGACATTTCAGAGTGAGGGAGAAATTGAAAAAGAT
TAG
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Synonyms
Publications