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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr17 | genome | chr17:800892..803939 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO17G02730.4 vs.
Match: EWM24159.1 (Protein of unknown function DUF1365 [Nannochloropsis gaditana]) HSP 1 Score: 398.3 bits (1022), Expect = 2.500e-107 Identity = 206/347 (59.37%), Postives = 236/347 (68.01%), Query Frame = 0
Query: 4 PSSSTLLHALPQSLPLLLMHTFLTLPFLLFCVAGLLSLRPSHARRNLGLSCLYVGRVWHVRFLPTIHKFGYGLFYTYLDLGKKVITGEKCVLISSPQHPDFLSPSFLLPDHLPQTFSGLWPLASFSTLAAPSLLPALAHFHEADHLKDIPIQYASSSLPSNSSSSPPKEGGKEGGQQRPLVPLPLVERVRRLVEKETGKRPKGKICLLTHLRYMGYTFNPVSFYYVWDEEGQHLETVVAEVSNTPWNEMHCYVLSPHAANVSAVKKWRKRQKMKDGGEDDEGGKEEEVWNYVFEKTFHVSPFMDMAHIYDWEFVGPREGGRKKGREGGAGTGMWVTTHMLKKESRER 351
P SST PL+L+ TF+ +PFL+ CV GLLS RPSH RR LG SCLYVGRVWHVRFLPT+HKF YGLFYTYLDL D LPQTF G+WPLASFSTLA+P+ LPA AHFHEADHLKD+P++Y SS P S PP PLPL ERVRRLV ++TG+RP+G+I LLTHLRYMGY FNPVSFYYVWD+EG+ +ETVVAEVSNTPWNEMHCYVL P + + A + K++ GGK EEVW YVF+K FHVSPFMDMAH+YDWEFV PREG ++G E GMWVTTHMLKKE +ER
Sbjct: 31 PPSSTSSAFFSSVWPLVLLVTFVIVPFLVLCVRGLLSSRPSHTRRPLGFSCLYVGRVWHVRFLPTVHKFAYGLFYTYLDL-----------------------------DCLPQTFQGMWPLASFSTLASPASLPAFAHFHEADHLKDVPVEYHPSSFPLPSPPPPP-------------TPLPLAERVRRLVARKTGRRPEGRITLLTHLRYMGYVFNPVSFYYVWDKEGKAVETVVAEVSNTPWNEMHCYVLDPRSPGIKAT----RMLKLRSVAGTRAGGK-EEVWRYVFDKDFHVSPFMDMAHVYDWEFVAPREGRAEEGAE----RGMWVTTHMLKKEGKER 326
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO17G02730.4 ID=NO17G02730.4|Name=NO17G02730.4|organism=Nannochloropsis oceanica|type=mRNA|length=2940bp
CTTGGCACTTTAATACATTCTTTTACATGGCATGTACATTGCTCCCGGCT
AATCTTTTTCAATTTCTCCCTCACTCTGAAATGTCTGTGGCACTTCAATG
CCCGCTACACCCAGCGCTTCCCTCACCCACTCAGGCACTGTCACATCTAC
TTTTTCTCCTTTCTTCCCAGCAATCTCACCAGAATAGTGAGCTTTCAAAA
ACGCCAATACAAAGCTAGGAAAAGCGTCTCCTCCCTCCATAATCGCCTTT
CGCATTCTTCGCATCAATCCGAGCATGTAAGCGAGGTTGTGGTACGTGAC
TAATTGACACCCCAGAGCTCCCGACTTGAGCAACCGGTGTATCGCTGCGC
GCGAGTAGTTCTTGCACGTCATGCACTGACACCCCTCTTCGATAGGTTTG
CCCGTCTCATTCCCACATGCGTTGTTCTTAAGCTTCAAAACCCCCGTTCC
AACAAGCGCGACGCCAAATCTGGCCGTGCGAGTGGGGTAGACACAGTCAT
ACATATCCACGCCCAACGCCGTGCACACCACCAAGTCTAGCGGATAGCCG
ACACCCATCAAATACCTCGGTTTCCCCTCGGGTAAACCCGCGGCAGACTG
TGCCACCACCTTCCAAAATGCTTCCTTGCTCTCTCCACCCGCTAGACCCC
CAATCGCGTAACCTGGACAGTCGCGGGCGATCATTTCGCGCAGGCACCCT
TCCCGCAATCCGCCCGGGGAAGTATCCAACCCCCCCTGAATGATGCCGAA
CAGATTCTGTTCTTGCGGTCGAGAGTGTGCTTGTATGCACCGATCTAACC
ACCGGATGGATCGCGCGGTGGCTTCACGGAAGCGGTCGTCGTTCTCAGTG
ACAGAAGACACGACATCGTCAAGCTGCATCATTATATCGGACCCTATCCG
GTTTTGGTGCGCAATGGACATCTCAGGCGTCAGCAGCATCTGCGTCCCAT
CGATAGGGCTTTGAAACGTCACACCTTCCTCCGTGATCTCGGCCAAGGCC
AAGAGGGAGACCATCTGGAATCCTCCCGAGTCGGTGAGGAGGTTGCGAGG
CCAGTTCATAAATTTGTGCAAGCCCCCCATTTCCTCCAGCAGGTCCGTCC
CCGGCTGCAAGGCGAGGTGGTATGTGTTCCCCAGAATAATCTGAGGAGAA
AGTTCTGGATGGAGTAATTGTTCGGTTGGGATGCCTTTAATTGTGCCCTT
GGTGCCCACGGGCATGAAGACAGGCGTCGCGAGGGGACCGTGGGGCAAGT
GGACGGTGGCGGCCCTTGCGCGTCGCCATCGAGCGTGGATGTGAAAGCAG
AGGGCAGGGGAGGCCGCCGTGAATGTGGGCGGGATACCTTCCTCGACGAG
AGGTGGTGCGGAAATTGGTGGGGGTGGTGACACTTCGGTCTCGTCGGGCA
TGAGGCCAGGGATGGTGGTGGGTAGGAGGATGCGAAAAGTAGTGGTGGAA
GCAGAGGCGGGAGGAGGGTTCCAACGAGGCCGGCTTCTGCAGGAACTGAT
GCTGATGCTAGTGCTGCTGGTGGTGACTGCCTGTGTGATGTGTTGACAAT
AAGTAAAATGATTGTATGGGTTAGCGCCCAGAGAGCGAGGGAGGAGGTCA
ACGCTTCTCCCGACACATCTCTTCAACCAACGGCCACGAGCCGCAGCCCT
CCAAAACATATAACAACACATCCATGCATATACTGAATGTCCGCCCTTTA
CTTCCACGTCCCCGAAAAATAGAAGGCGTTAACCCGTATCCCCTGTACAA
TGTCCAACTACAGAGAGCGCCCCCCCATCACAGAGACGGGCAGGCAGGGC
TGAGGCGAAGACCGACACGGCACCATCATGAGGCTCCCCTCCTCCTCAAC
CCTCCTCCATGCCCTTCCCCAATCTCTACCCCTCCTCCTCATGCACACAT
TTTTGACTCTGCCCTTTCTTCTGTTCTGCGTGGCTGGACTCCTGTCTCTG
CGCCCTTCCCACGCCCGTCGCAACCTCGGATTGTCCTGCCTGTATGTTGG
GCGAGTCTGGCACGTGCGCTTCCTCCCGACCATCCACAAGTTCGGATACG
GCCTCTTTTACACGTATTTGGACCTCGGTAAGAAGGTAATCACAGGGGAG
AAATGTGTCCTCATCTCCTCCCCTCAACACCCCGACTTTCTTTCTCCCTC
CTTCCTCCTTCCAGACCACCTCCCTCAGACCTTCAGTGGACTGTGGCCTC
TCGCTTCCTTCTCGACCCTTGCCGCCCCCTCCCTCCTTCCCGCCCTCGCC
CACTTCCATGAAGCCGACCACTTGAAAGATATCCCCATCCAGTACGCTTC
ATCCTCGCTCCCTTCCAACTCCTCTTCTTCCCCGCCCAAGGAGGGAGGGA
AGGAGGGAGGGCAGCAGCGACCACTCGTGCCTCTACCACTGGTAGAAAGG
GTGCGGCGGTTGGTGGAGAAAGAAACAGGCAAGCGGCCTAAGGGTAAAAT
TTGCCTTTTGACACATTTAAGATACATGGGTTATACATTCAACCCGGTCA
GTTTTTACTATGTGTGGGATGAAGAGGGCCAGCATCTTGAGACAGTCGTG
GCTGAGGTAAGCAACACCCCTTGGAATGAGATGCACTGCTACGTCCTCAG
CCCGCACGCGGCCAATGTCTCCGCCGTGAAAAAATGGAGGAAAAGACAGA
AAATGAAGGACGGAGGGGAGGATGACGAAGGCGGGAAGGAGGAAGAGGTG
TGGAACTACGTGTTCGAAAAGACGTTTCATGTCTCGCCGTTTATGGACAT
GGCCCATATCTACGATTGGGAGTTTGTGGGGCCGAGGGAGGGAGGAAGGA
AGAAAGGGAGGGAGGGAGGGGCAGGCACTGGGATGTGGGTGACGACGCAC
ATGCTCAAGAAGGAGAGCAGGGAACGGTAGGGGCATTGGAGGGAGGGAAG
GAGGGATAGGTGGATGGAGGGAGGGAGGGAAGGAGGGAGG back to topprotein sequence of NO17G02730.4 >NO17G02730.4-protein ID=NO17G02730.4-protein|Name=NO17G02730.4|organism=Nannochloropsis oceanica|type=polypeptide|length=351bp
MRLPSSSTLLHALPQSLPLLLMHTFLTLPFLLFCVAGLLSLRPSHARRNL
GLSCLYVGRVWHVRFLPTIHKFGYGLFYTYLDLGKKVITGEKCVLISSPQ
HPDFLSPSFLLPDHLPQTFSGLWPLASFSTLAAPSLLPALAHFHEADHLK
DIPIQYASSSLPSNSSSSPPKEGGKEGGQQRPLVPLPLVERVRRLVEKET
GKRPKGKICLLTHLRYMGYTFNPVSFYYVWDEEGQHLETVVAEVSNTPWN
EMHCYVLSPHAANVSAVKKWRKRQKMKDGGEDDEGGKEEEVWNYVFEKTF
HVSPFMDMAHIYDWEFVGPREGGRKKGREGGAGTGMWVTTHMLKKESRER
* back to topmRNA from alignment at chr17:800892..803939- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO17G02730.4 ID=NO17G02730.4|Name=NO17G02730.4|organism=Nannochloropsis oceanica|type=mRNA|length=3048bp|location=Sequence derived from alignment at chr17:800892..803939- (Nannochloropsis oceanica)
CTTGGCACTTTAATACATTCTTTTACATGGCATGTACATTGCTCCCGGCT
AATCTTTTTCAATTTCTCCCTCACTCTGAAATGTCTGTGGCACTTCAATG
CCCGCTACACCCAGCGCTTCCCTCACCCACTCAGGCACTGTCACATCTAC
TTTTTCTCCTTTCTTCCCAGCAATCTCACCAGAATAGTGAGCTTTCAAAA
ACGCCAATACAAAGCTAGGAAAAGCGTCTCCTCCCTCCATAATCGCCTTT
CGCATTCTTCGCATCAATCCGAGCATGTAAGCGAGGTTGTGGTACGTGAC
TAATTGACACCCCAGAGCTCCCGACTTGAGCAACCGGTGTATCGCTGCGC
GCGAGTAGTTCTTGCACGTCATGCACTGACACCCCTCTTCGATAGGTTTG
CCCGTCTCATTCCCACATGCGTTGTTCTTAAGCTTCAAAACCCCCGTTCC
AACAAGCGCGACGCCAAATCTGGCCGTGCGAGTGGGGTAGACACAGTCAT
ACATATCCACGCCCAACGCCGTGCACACCACCAAGTCTAGCGGATAGCCG
ACACCCATCAAATACCTCGGTTTCCCCTCGGGTAAACCCGCGGCAGACTG
TGCCACCACCTTCCAAAATGCTTCCTTGCTCTCTCCACCCGCTAGACCCC
CAATCGCGTAACCTGGACAGTCGCGGGCGATCATTTCGCGCAGGCACCCT
TCCCGCAATCCGCCCGGGGAAGTATCCAACCCCCCCTGAATGATGCCGAA
CAGATTCTGTTCTTGCGGTCGAGAGTGTGCTTGTATGCACCGATCTAACC
ACCGGATGGATCGCGCGGTGGCTTCACGGAAGCGGTCGTCGTTCTCAGTG
ACAGAAGACACGACATCGTCAAGCTGCATCATTATATCGGACCCTATCCG
GTTTTGGTGCGCAATGGACATCTCAGGCGTCAGCAGCATCTGCGTCCCAT
CGATAGGGCTTTGAAACGTCACACCTTCCTCCGTGATCTCGGCCAAGGCC
AAGAGGGAGACCATCTGGAATCCTCCCGAGTCGGTGAGGAGGTTGCGAGG
CCAGTTCATAAATTTGTGCAAGCCCCCCATTTCCTCCAGCAGGTCCGTCC
CCGGCTGCAAGGCGAGGTGGTATGTGTTCCCCAGAATAATCTGAGGAGAA
AGTTCTGGATGGAGTAATTGTTCGGTTGGGATGCCTTTAATTGTGCCCTT
GGTGCCCACGGGCATGAAGACAGGCGTCGCGAGGGGACCGTGGGGCAAGT
GGACGGTGGCGGCCCTTGCGCGTCGCCATCGAGCGTGGATGTGAAAGCAG
AGGGCAGGGGAGGCCGCCGTGAATGTGGGCGGGATACCTTCCTCGACGAG
AGGTGGTGCGGAAATTGGTGGGGGTGGTGACACTTCGGTCTCGTCGGGCA
TGAGGCCAGGGATGGTGGTGGGTAGGAGGATGCGAAAAGTAGTGGTGGAA
GCAGAGGCGGGAGGAGGGTTCCAACGAGGCCGGCTTCTGCAGGAACTGAT
GCTGATGCTAGTGCTGCTGGTGGTGACTGCCTGTGTGATGTGTTGACAAT
AAGTAAAATGATTGTATGGGTTAGCGCCCAGAGAGCGAGGGAGGAGGTCA
ACGCTTCTCCCGACACATCTCTTCAACCAACGGCCACGAGCCGCAGCCCT
CCAAAACATATAACAACACATCCATGCATATACTGAATGTCCGCCCTTTA
CTTCCACGTCCCCGAAAAATAGAAGGCGTTAACCCGTATCCCCTGTACAA
TGTCCAACTACAGAGAGCGCCCCCCCATCACAGAGACGGGCAGGCAGGGC
TGAGGCGAAGACCGACACGGCACCATCATGAGGCTCCCCTCCTCCTCAAC
CCTCCTCCATGCCCTTCCCCAATCTCTACCCCTCCTCCTCATGCACACAT
TTTTGACTCTGCCCTTTCTTCTGTTCTGCGTGGCTGGACTCCTGTCTCTG
CGCCCTTCCCACGCCCGTCGCAACCTCGGATTGTCCTGCCTGTATGTTGG
GCGAGTCTGGCACGTGCGCTTCCTCCCGACCATCCACAAGTTCGGATACG
GCCTCTTTTACACGTATTTGGACCTCGGTAAGAAGGTAATCACAGGGGAG
AAATGTGTCCTCATCTCCTCCCCTCAACACCCCGACTTTCTTTCTCCCTC
CTTCCTCCTTCCAGACCACCTCCCTCAGACCTTCAGTGGACTGTGGCCTC
TCGCTTCCTTCTCGACCCTTGCCGCCCCCTCCCTCCTTCCCGCCCTCGCC
CACTTCCATGAAGCCGACCACTTGAAAGATATCCCCATCCAGTACGCTTC
ATCCTCGCTCCCTTCCAACTCCTCTTCTTCCCCGCCCAAGGAGGGAGGGA
AGGAGGGAGGGCAGCAGCGACCACTCGTGCCTCTACCACTGGTAGAAAGG
GTGCGGCGGTTGGTGGAGAAAGAAACAGGCAAGCGGCCTAAGGGTAAAAT
TTGCCTTTTGACACATTTAAGATACATGGGTTATACATTCAACCCGGTCA
GTTTTTACTATGTGTGGGATGAAGAGGTACGGAACGAGGGAGGGAGGGAG
GGCGGGAGAGAGAGAGGGAAGGACAGACAGACTTGATCGTTGGACTGTAC
TTACCATTTTTCTTCCCTCCCTTTCCCCTTCCAGGGCCAGCATCTTGAGA
CAGTCGTGGCTGAGGTAAGCAACACCCCTTGGAATGAGATGCACTGCTAC
GTCCTCAGCCCGCACGCGGCCAATGTCTCCGCCGTGAAAAAATGGAGGAA
AAGACAGAAAATGAAGGACGGAGGGGAGGATGACGAAGGCGGGAAGGAGG
AAGAGGTGTGGAACTACGTGTTCGAAAAGACGTTTCATGTCTCGCCGTTT
ATGGACATGGCCCATATCTACGATTGGGAGTTTGTGGGGCCGAGGGAGGG
AGGAAGGAAGAAAGGGAGGGAGGGAGGGGCAGGCACTGGGATGTGGGTGA
CGACGCACATGCTCAAGAAGGAGAGCAGGGAACGGTAGGGGCATTGGAGG
GAGGGAAGGAGGGATAGGTGGATGGAGGGAGGGAGGGAAGGAGGGAGG back to topCoding sequence (CDS) from alignment at chr17:800892..803939- >NO17G02730.4 ID=NO17G02730.4|Name=NO17G02730.4|organism=Nannochloropsis oceanica|type=CDS|length=1053bp|location=Sequence derived from alignment at chr17:800892..803939- (Nannochloropsis oceanica)
ATGAGGCTCCCCTCCTCCTCAACCCTCCTCCATGCCCTTCCCCAATCTCT
ACCCCTCCTCCTCATGCACACATTTTTGACTCTGCCCTTTCTTCTGTTCT
GCGTGGCTGGACTCCTGTCTCTGCGCCCTTCCCACGCCCGTCGCAACCTC
GGATTGTCCTGCCTGTATGTTGGGCGAGTCTGGCACGTGCGCTTCCTCCC
GACCATCCACAAGTTCGGATACGGCCTCTTTTACACGTATTTGGACCTCG
GTAAGAAGGTAATCACAGGGGAGAAATGTGTCCTCATCTCCTCCCCTCAA
CACCCCGACTTTCTTTCTCCCTCCTTCCTCCTTCCAGACCACCTCCCTCA
GACCTTCAGTGGACTGTGGCCTCTCGCTTCCTTCTCGACCCTTGCCGCCC
CCTCCCTCCTTCCCGCCCTCGCCCACTTCCATGAAGCCGACCACTTGAAA
GATATCCCCATCCAGTACGCTTCATCCTCGCTCCCTTCCAACTCCTCTTC
TTCCCCGCCCAAGGAGGGAGGGAAGGAGGGAGGGCAGCAGCGACCACTCG
TGCCTCTACCACTGGTAGAAAGGGTGCGGCGGTTGGTGGAGAAAGAAACA
GGCAAGCGGCCTAAGGGTAAAATTTGCCTTTTGACACATTTAAGATACAT
GGGTTATACATTCAACCCGGTCAGTTTTTACTATGTGTGGGATGAAGAGG
GCCAGCATCTTGAGACAGTCGTGGCTGAGGTAAGCAACACCCCTTGGAAT
GAGATGCACTGCTACGTCCTCAGCCCGCACGCGGCCAATGTCTCCGCCGT
GAAAAAATGGAGGAAAAGACAGAAAATGAAGGACGGAGGGGAGGATGACG
AAGGCGGGAAGGAGGAAGAGGTGTGGAACTACGTGTTCGAAAAGACGTTT
CATGTCTCGCCGTTTATGGACATGGCCCATATCTACGATTGGGAGTTTGT
GGGGCCGAGGGAGGGAGGAAGGAAGAAAGGGAGGGAGGGAGGGGCAGGCA
CTGGGATGTGGGTGACGACGCACATGCTCAAGAAGGAGAGCAGGGAACGG
TAG back to top
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