NO17G02730.3, NO17G02730.3 (mRNA) Nannochloropsis oceanica

Overview
NameNO17G02730.3
Unique NameNO17G02730.3
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2853
Alignment locationchr17:800892..803939 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr17genomechr17:800892..803939 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO17G02730.3 vs.
Match: EWM24159.1 (Protein of unknown function DUF1365 [Nannochloropsis gaditana])

HSP 1 Score: 413.3 bits (1061), Expect = 6.900e-112
Identity = 206/318 (64.78%), Postives = 236/318 (74.21%), Query Frame = 0 
Query:    4 PSSSTLLHALPQSLPLLLMHTFLTLPFLLFCVAGLLSLRPSHARRNLGLSCLYVGRVWHVRFLPTIHKFGYGLFYTYLDLDHLPQTFSGLWPLASFSTLAAPSLLPALAHFHEADHLKDIPIQYASSSLPSNSSSSPPKEGGKEGGQQRPLVPLPLVERVRRLVEKETGKRPKGKICLLTHLRYMGYTFNPVSFYYVWDEEGQHLETVVAEVSNTPWNEMHCYVLSPHAANVSAVKKWRKRQKMKDGGEDDEGGKEEEVWNYVFEKTFHVSPFMDMAHIYDWEFVGPREGGRKKGREGGAGTGMWVTTHMLKKESRER 322
            P SST         PL+L+ TF+ +PFL+ CV GLLS RPSH RR LG SCLYVGRVWHVRFLPT+HKF YGLFYTYLDLD LPQTF G+WPLASFSTLA+P+ LPA AHFHEADHLKD+P++Y  SS P  S   PP              PLPL ERVRRLV ++TG+RP+G+I LLTHLRYMGY FNPVSFYYVWD+EG+ +ETVVAEVSNTPWNEMHCYVL P +  + A     +  K++       GGK EEVW YVF+K FHVSPFMDMAH+YDWEFV PREG  ++G E     GMWVTTHMLKKE +ER
Sbjct:   31 PPSSTSSAFFSSVWPLVLLVTFVIVPFLVLCVRGLLSSRPSHTRRPLGFSCLYVGRVWHVRFLPTVHKFAYGLFYTYLDLDCLPQTFQGMWPLASFSTLASPASLPAFAHFHEADHLKDVPVEYHPSSFPLPSPPPPP-------------TPLPLAERVRRLVARKTGRRPEGRITLLTHLRYMGYVFNPVSFYYVWDKEGKAVETVVAEVSNTPWNEMHCYVLDPRSPGIKAT----RMLKLRSVAGTRAGGK-EEVWRYVFDKDFHVSPFMDMAHVYDWEFVAPREGRAEEGAE----RGMWVTTHMLKKEGKER 326
The following BLAST results are available for this feature:
BLAST of NO17G02730.3 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24159.16.900e-11264.78Protein of unknown function DUF1365 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO17G02730NO17G02730Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO17G02730.3NO17G02730.3-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO17G02730.3.cds1NO17G02730.3.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO17G02730.3.cds2NO17G02730.3.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO17G02730.3.cds3NO17G02730.3.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO17G02730.3 ID=NO17G02730.3|Name=NO17G02730.3|organism=Nannochloropsis oceanica|type=mRNA|length=2853bp
CTTGGCACTTTAATACATTCTTTTACATGGCATGTACATTGCTCCCGGCT
AATCTTTTTCAATTTCTCCCTCACTCTGAAATGTCTGTGGCACTTCAATG
CCCGCTACACCCAGCGCTTCCCTCACCCACTCAGGCACTGTCACATCTAC
TTTTTCTCCTTTCTTCCCAGCAATCTCACCAGAATAGTGAGCTTTCAAAA
ACGCCAATACAAAGCTAGGAAAAGCGTCTCCTCCCTCCATAATCGCCTTT
CGCATTCTTCGCATCAATCCGAGCATGTAAGCGAGGTTGTGGTACGTGAC
TAATTGACACCCCAGAGCTCCCGACTTGAGCAACCGGTGTATCGCTGCGC
GCGAGTAGTTCTTGCACGTCATGCACTGACACCCCTCTTCGATAGGTTTG
CCCGTCTCATTCCCACATGCGTTGTTCTTAAGCTTCAAAACCCCCGTTCC
AACAAGCGCGACGCCAAATCTGGCCGTGCGAGTGGGGTAGACACAGTCAT
ACATATCCACGCCCAACGCCGTGCACACCACCAAGTCTAGCGGATAGCCG
ACACCCATCAAATACCTCGGTTTCCCCTCGGGTAAACCCGCGGCAGACTG
TGCCACCACCTTCCAAAATGCTTCCTTGCTCTCTCCACCCGCTAGACCCC
CAATCGCGTAACCTGGACAGTCGCGGGCGATCATTTCGCGCAGGCACCCT
TCCCGCAATCCGCCCGGGGAAGTATCCAACCCCCCCTGAATGATGCCGAA
CAGATTCTGTTCTTGCGGTCGAGAGTGTGCTTGTATGCACCGATCTAACC
ACCGGATGGATCGCGCGGTGGCTTCACGGAAGCGGTCGTCGTTCTCAGTG
ACAGAAGACACGACATCGTCAAGCTGCATCATTATATCGGACCCTATCCG
GTTTTGGTGCGCAATGGACATCTCAGGCGTCAGCAGCATCTGCGTCCCAT
CGATAGGGCTTTGAAACGTCACACCTTCCTCCGTGATCTCGGCCAAGGCC
AAGAGGGAGACCATCTGGAATCCTCCCGAGTCGGTGAGGAGGTTGCGAGG
CCAGTTCATAAATTTGTGCAAGCCCCCCATTTCCTCCAGCAGGTCCGTCC
CCGGCTGCAAGGCGAGGTGGTATGTGTTCCCCAGAATAATCTGAGGAGAA
AGTTCTGGATGGAGTAATTGTTCGGTTGGGATGCCTTTAATTGTGCCCTT
GGTGCCCACGGGCATGAAGACAGGCGTCGCGAGGGGACCGTGGGGCAAGT
GGACGGTGGCGGCCCTTGCGCGTCGCCATCGAGCGTGGATGTGAAAGCAG
AGGGCAGGGGAGGCCGCCGTGAATGTGGGCGGGATACCTTCCTCGACGAG
AGGTGGTGCGGAAATTGGTGGGGGTGGTGACACTTCGGTCTCGTCGGGCA
TGAGGCCAGGGATGGTGGTGGGTAGGAGGATGCGAAAAGTAGTGGTGGAA
GCAGAGGCGGGAGGAGGGTTCCAACGAGGCCGGCTTCTGCAGGAACTGAT
GCTGATGCTAGTGCTGCTGGTGGTGACTGCCTGTGTGATGTGTTGACAAT
AAGTAAAATGATTGTATGGGTTAGCGCCCAGAGAGCGAGGGAGGAGGTCA
ACGCTTCTCCCGACACATCTCTTCAACCAACGGCCACGAGCCGCAGCCCT
CCAAAACATATAACAACACATCCATGCATATACTGAATGTCCGCCCTTTA
CTTCCACGTCCCCGAAAAATAGAAGGCGTTAACCCGTATCCCCTGTACAA
TGTCCAACTACAGAGAGCGCCCCCCCATCACAGAGACGGGCAGGCAGGGC
TGAGGCGAAGACCGACACGGCACCATCATGAGGCTCCCCTCCTCCTCAAC
CCTCCTCCATGCCCTTCCCCAATCTCTACCCCTCCTCCTCATGCACACAT
TTTTGACTCTGCCCTTTCTTCTGTTCTGCGTGGCTGGACTCCTGTCTCTG
CGCCCTTCCCACGCCCGTCGCAACCTCGGATTGTCCTGCCTGTATGTTGG
GCGAGTCTGGCACGTGCGCTTCCTCCCGACCATCCACAAGTTCGGATACG
GCCTCTTTTACACGTATTTGGACCTCGACCACCTCCCTCAGACCTTCAGT
GGACTGTGGCCTCTCGCTTCCTTCTCGACCCTTGCCGCCCCCTCCCTCCT
TCCCGCCCTCGCCCACTTCCATGAAGCCGACCACTTGAAAGATATCCCCA
TCCAGTACGCTTCATCCTCGCTCCCTTCCAACTCCTCTTCTTCCCCGCCC
AAGGAGGGAGGGAAGGAGGGAGGGCAGCAGCGACCACTCGTGCCTCTACC
ACTGGTAGAAAGGGTGCGGCGGTTGGTGGAGAAAGAAACAGGCAAGCGGC
CTAAGGGTAAAATTTGCCTTTTGACACATTTAAGATACATGGGTTATACA
TTCAACCCGGTCAGTTTTTACTATGTGTGGGATGAAGAGGGCCAGCATCT
TGAGACAGTCGTGGCTGAGGTAAGCAACACCCCTTGGAATGAGATGCACT
GCTACGTCCTCAGCCCGCACGCGGCCAATGTCTCCGCCGTGAAAAAATGG
AGGAAAAGACAGAAAATGAAGGACGGAGGGGAGGATGACGAAGGCGGGAA
GGAGGAAGAGGTGTGGAACTACGTGTTCGAAAAGACGTTTCATGTCTCGC
CGTTTATGGACATGGCCCATATCTACGATTGGGAGTTTGTGGGGCCGAGG
GAGGGAGGAAGGAAGAAAGGGAGGGAGGGAGGGGCAGGCACTGGGATGTG
GGTGACGACGCACATGCTCAAGAAGGAGAGCAGGGAACGGTAGGGGCATT
GGAGGGAGGGAAGGAGGGATAGGTGGATGGAGGGAGGGAGGGAAGGAGGG
AGG
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protein sequence of NO17G02730.3

>NO17G02730.3-protein ID=NO17G02730.3-protein|Name=NO17G02730.3|organism=Nannochloropsis oceanica|type=polypeptide|length=322bp
MRLPSSSTLLHALPQSLPLLLMHTFLTLPFLLFCVAGLLSLRPSHARRNL
GLSCLYVGRVWHVRFLPTIHKFGYGLFYTYLDLDHLPQTFSGLWPLASFS
TLAAPSLLPALAHFHEADHLKDIPIQYASSSLPSNSSSSPPKEGGKEGGQ
QRPLVPLPLVERVRRLVEKETGKRPKGKICLLTHLRYMGYTFNPVSFYYV
WDEEGQHLETVVAEVSNTPWNEMHCYVLSPHAANVSAVKKWRKRQKMKDG
GEDDEGGKEEEVWNYVFEKTFHVSPFMDMAHIYDWEFVGPREGGRKKGRE
GGAGTGMWVTTHMLKKESRER*
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mRNA from alignment at chr17:800892..803939-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO17G02730.3 ID=NO17G02730.3|Name=NO17G02730.3|organism=Nannochloropsis oceanica|type=mRNA|length=3048bp|location=Sequence derived from alignment at chr17:800892..803939- (Nannochloropsis oceanica)
CTTGGCACTTTAATACATTCTTTTACATGGCATGTACATTGCTCCCGGCT
AATCTTTTTCAATTTCTCCCTCACTCTGAAATGTCTGTGGCACTTCAATG
CCCGCTACACCCAGCGCTTCCCTCACCCACTCAGGCACTGTCACATCTAC
TTTTTCTCCTTTCTTCCCAGCAATCTCACCAGAATAGTGAGCTTTCAAAA
ACGCCAATACAAAGCTAGGAAAAGCGTCTCCTCCCTCCATAATCGCCTTT
CGCATTCTTCGCATCAATCCGAGCATGTAAGCGAGGTTGTGGTACGTGAC
TAATTGACACCCCAGAGCTCCCGACTTGAGCAACCGGTGTATCGCTGCGC
GCGAGTAGTTCTTGCACGTCATGCACTGACACCCCTCTTCGATAGGTTTG
CCCGTCTCATTCCCACATGCGTTGTTCTTAAGCTTCAAAACCCCCGTTCC
AACAAGCGCGACGCCAAATCTGGCCGTGCGAGTGGGGTAGACACAGTCAT
ACATATCCACGCCCAACGCCGTGCACACCACCAAGTCTAGCGGATAGCCG
ACACCCATCAAATACCTCGGTTTCCCCTCGGGTAAACCCGCGGCAGACTG
TGCCACCACCTTCCAAAATGCTTCCTTGCTCTCTCCACCCGCTAGACCCC
CAATCGCGTAACCTGGACAGTCGCGGGCGATCATTTCGCGCAGGCACCCT
TCCCGCAATCCGCCCGGGGAAGTATCCAACCCCCCCTGAATGATGCCGAA
CAGATTCTGTTCTTGCGGTCGAGAGTGTGCTTGTATGCACCGATCTAACC
ACCGGATGGATCGCGCGGTGGCTTCACGGAAGCGGTCGTCGTTCTCAGTG
ACAGAAGACACGACATCGTCAAGCTGCATCATTATATCGGACCCTATCCG
GTTTTGGTGCGCAATGGACATCTCAGGCGTCAGCAGCATCTGCGTCCCAT
CGATAGGGCTTTGAAACGTCACACCTTCCTCCGTGATCTCGGCCAAGGCC
AAGAGGGAGACCATCTGGAATCCTCCCGAGTCGGTGAGGAGGTTGCGAGG
CCAGTTCATAAATTTGTGCAAGCCCCCCATTTCCTCCAGCAGGTCCGTCC
CCGGCTGCAAGGCGAGGTGGTATGTGTTCCCCAGAATAATCTGAGGAGAA
AGTTCTGGATGGAGTAATTGTTCGGTTGGGATGCCTTTAATTGTGCCCTT
GGTGCCCACGGGCATGAAGACAGGCGTCGCGAGGGGACCGTGGGGCAAGT
GGACGGTGGCGGCCCTTGCGCGTCGCCATCGAGCGTGGATGTGAAAGCAG
AGGGCAGGGGAGGCCGCCGTGAATGTGGGCGGGATACCTTCCTCGACGAG
AGGTGGTGCGGAAATTGGTGGGGGTGGTGACACTTCGGTCTCGTCGGGCA
TGAGGCCAGGGATGGTGGTGGGTAGGAGGATGCGAAAAGTAGTGGTGGAA
GCAGAGGCGGGAGGAGGGTTCCAACGAGGCCGGCTTCTGCAGGAACTGAT
GCTGATGCTAGTGCTGCTGGTGGTGACTGCCTGTGTGATGTGTTGACAAT
AAGTAAAATGATTGTATGGGTTAGCGCCCAGAGAGCGAGGGAGGAGGTCA
ACGCTTCTCCCGACACATCTCTTCAACCAACGGCCACGAGCCGCAGCCCT
CCAAAACATATAACAACACATCCATGCATATACTGAATGTCCGCCCTTTA
CTTCCACGTCCCCGAAAAATAGAAGGCGTTAACCCGTATCCCCTGTACAA
TGTCCAACTACAGAGAGCGCCCCCCCATCACAGAGACGGGCAGGCAGGGC
TGAGGCGAAGACCGACACGGCACCATCATGAGGCTCCCCTCCTCCTCAAC
CCTCCTCCATGCCCTTCCCCAATCTCTACCCCTCCTCCTCATGCACACAT
TTTTGACTCTGCCCTTTCTTCTGTTCTGCGTGGCTGGACTCCTGTCTCTG
CGCCCTTCCCACGCCCGTCGCAACCTCGGATTGTCCTGCCTGTATGTTGG
GCGAGTCTGGCACGTGCGCTTCCTCCCGACCATCCACAAGTTCGGATACG
GCCTCTTTTACACGTATTTGGACCTCGGTAAGAAGGTAATCACAGGGGAG
AAATGTGTCCTCATCTCCTCCCCTCAACACCCCGACTTTCTTTCTCCCTC
CTTCCTCCTTCCAGACCACCTCCCTCAGACCTTCAGTGGACTGTGGCCTC
TCGCTTCCTTCTCGACCCTTGCCGCCCCCTCCCTCCTTCCCGCCCTCGCC
CACTTCCATGAAGCCGACCACTTGAAAGATATCCCCATCCAGTACGCTTC
ATCCTCGCTCCCTTCCAACTCCTCTTCTTCCCCGCCCAAGGAGGGAGGGA
AGGAGGGAGGGCAGCAGCGACCACTCGTGCCTCTACCACTGGTAGAAAGG
GTGCGGCGGTTGGTGGAGAAAGAAACAGGCAAGCGGCCTAAGGGTAAAAT
TTGCCTTTTGACACATTTAAGATACATGGGTTATACATTCAACCCGGTCA
GTTTTTACTATGTGTGGGATGAAGAGGTACGGAACGAGGGAGGGAGGGAG
GGCGGGAGAGAGAGAGGGAAGGACAGACAGACTTGATCGTTGGACTGTAC
TTACCATTTTTCTTCCCTCCCTTTCCCCTTCCAGGGCCAGCATCTTGAGA
CAGTCGTGGCTGAGGTAAGCAACACCCCTTGGAATGAGATGCACTGCTAC
GTCCTCAGCCCGCACGCGGCCAATGTCTCCGCCGTGAAAAAATGGAGGAA
AAGACAGAAAATGAAGGACGGAGGGGAGGATGACGAAGGCGGGAAGGAGG
AAGAGGTGTGGAACTACGTGTTCGAAAAGACGTTTCATGTCTCGCCGTTT
ATGGACATGGCCCATATCTACGATTGGGAGTTTGTGGGGCCGAGGGAGGG
AGGAAGGAAGAAAGGGAGGGAGGGAGGGGCAGGCACTGGGATGTGGGTGA
CGACGCACATGCTCAAGAAGGAGAGCAGGGAACGGTAGGGGCATTGGAGG
GAGGGAAGGAGGGATAGGTGGATGGAGGGAGGGAGGGAAGGAGGGAGG
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Coding sequence (CDS) from alignment at chr17:800892..803939-

>NO17G02730.3 ID=NO17G02730.3|Name=NO17G02730.3|organism=Nannochloropsis oceanica|type=CDS|length=966bp|location=Sequence derived from alignment at chr17:800892..803939- (Nannochloropsis oceanica)
ATGAGGCTCCCCTCCTCCTCAACCCTCCTCCATGCCCTTCCCCAATCTCT
ACCCCTCCTCCTCATGCACACATTTTTGACTCTGCCCTTTCTTCTGTTCT
GCGTGGCTGGACTCCTGTCTCTGCGCCCTTCCCACGCCCGTCGCAACCTC
GGATTGTCCTGCCTGTATGTTGGGCGAGTCTGGCACGTGCGCTTCCTCCC
GACCATCCACAAGTTCGGATACGGCCTCTTTTACACGTATTTGGACCTCG
ACCACCTCCCTCAGACCTTCAGTGGACTGTGGCCTCTCGCTTCCTTCTCG
ACCCTTGCCGCCCCCTCCCTCCTTCCCGCCCTCGCCCACTTCCATGAAGC
CGACCACTTGAAAGATATCCCCATCCAGTACGCTTCATCCTCGCTCCCTT
CCAACTCCTCTTCTTCCCCGCCCAAGGAGGGAGGGAAGGAGGGAGGGCAG
CAGCGACCACTCGTGCCTCTACCACTGGTAGAAAGGGTGCGGCGGTTGGT
GGAGAAAGAAACAGGCAAGCGGCCTAAGGGTAAAATTTGCCTTTTGACAC
ATTTAAGATACATGGGTTATACATTCAACCCGGTCAGTTTTTACTATGTG
TGGGATGAAGAGGGCCAGCATCTTGAGACAGTCGTGGCTGAGGTAAGCAA
CACCCCTTGGAATGAGATGCACTGCTACGTCCTCAGCCCGCACGCGGCCA
ATGTCTCCGCCGTGAAAAAATGGAGGAAAAGACAGAAAATGAAGGACGGA
GGGGAGGATGACGAAGGCGGGAAGGAGGAAGAGGTGTGGAACTACGTGTT
CGAAAAGACGTTTCATGTCTCGCCGTTTATGGACATGGCCCATATCTACG
ATTGGGAGTTTGTGGGGCCGAGGGAGGGAGGAAGGAAGAAAGGGAGGGAG
GGAGGGGCAGGCACTGGGATGTGGGTGACGACGCACATGCTCAAGAAGGA
GAGCAGGGAACGGTAG
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Synonyms
Publications