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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr17 | genome | chr17:799654..803939 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO17G02730.2 vs.
Match: EWM24159.1 (Protein of unknown function DUF1365 [Nannochloropsis gaditana]) HSP 1 Score: 397.9 bits (1021), Expect = 4.100e-107 Identity = 206/347 (59.37%), Postives = 236/347 (68.01%), Query Frame = 0
Query: 4 PSSSTLLHALPQSLPLLLMHTFLTLPFLLFCVAGLLSLRPSHARRNLGLSCLYVGRVWHVRFLPTIHKFGYGLFYTYLDLGKKVITGEKCVLISSPQHPDFLSPSFLLPDHLPQTFSGLWPLASFSTLAAPSLLPALAHFHEADHLKDIPIQYASSSLPSNSSSSPPKEGGKEGGQQRPLVPLPLVERVRRLVEKETGKRPKGKICLLTHLRYMGYTFNPVSFYYVWDEEGQHLETVVAEVSNTPWNEMHCYVLSPHAANVSAVKKWRKRQKMKDGGEDDEGGKEEEVWNYVFEKTFHVSPFMDMAHIYDWEFVGPREGGRKKGREGGAGTGMWVTTHMLKKESRER 351
P SST PL+L+ TF+ +PFL+ CV GLLS RPSH RR LG SCLYVGRVWHVRFLPT+HKF YGLFYTYLDL D LPQTF G+WPLASFSTLA+P+ LPA AHFHEADHLKD+P++Y SS P S PP PLPL ERVRRLV ++TG+RP+G+I LLTHLRYMGY FNPVSFYYVWD+EG+ +ETVVAEVSNTPWNEMHCYVL P + + A + K++ GGKEE VW YVF+K FHVSPFMDMAH+YDWEFV PREG ++G E GMWVTTHMLKKE +ER
Sbjct: 31 PPSSTSSAFFSSVWPLVLLVTFVIVPFLVLCVRGLLSSRPSHTRRPLGFSCLYVGRVWHVRFLPTVHKFAYGLFYTYLDL-----------------------------DCLPQTFQGMWPLASFSTLASPASLPAFAHFHEADHLKDVPVEYHPSSFPLPSPPPPP-------------TPLPLAERVRRLVARKTGRRPEGRITLLTHLRYMGYVFNPVSFYYVWDKEGKAVETVVAEVSNTPWNEMHCYVLDPRSPGIKATRML----KLRSVAGTRAGGKEE-VWRYVFDKDFHVSPFMDMAHVYDWEFVAPREGRAEEGAE----RGMWVTTHMLKKEGKER 326
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO17G02730.2 ID=NO17G02730.2|Name=NO17G02730.2|organism=Nannochloropsis oceanica|type=mRNA|length=3159bp CTTGGCACTTTAATACATTCTTTTACATGGCATGTACATTGCTCCCGGCT AATCTTTTTCAATTTCTCCCTCACTCTGAAATGTCTGTGGCACTTCAATG CCCGCTACACCCAGCGCTTCCCTCACCCACTCAGGCACTGTCACATCTAC TTTTTCTCCTTTCTTCCCAGCAATCTCACCAGAATAGTGAGCTTTCAAAA ACGCCAATACAAAGCTAGGAAAAGCGTCTCCTCCCTCCATAATCGCCTTT CGCATTCTTCGCATCAATCCGAGCATGTAAGCGAGGTTGTGGTACGTGAC TAATTGACACCCCAGAGCTCCCGACTTGAGCAACCGGTGTATCGCTGCGC GCGAGTAGTTCTTGCACGTCATGCACTGACACCCCTCTTCGATAGGTTTG CCCGTCTCATTCCCACATGCGTTGTTCTTAAGCTTCAAAACCCCCGTTCC AACAAGCGCGACGCCAAATCTGGCCGTGCGAGTGGGGTAGACACAGTCAT ACATATCCACGCCCAACGCCGTGCACACCACCAAGTCTAGCGGATAGCCG ACACCCATCAAATACCTCGGTTTCCCCTCGGGTAAACCCGCGGCAGACTG TGCCACCACCTTCCAAAATGCTTCCTTGCTCTCTCCACCCGCTAGACCCC CAATCGCGTAACCTGGACAGTCGCGGGCGATCATTTCGCGCAGGCACCCT TCCCGCAATCCGCCCGGGGAAGTATCCAACCCCCCCTGAATGATGCCGAA CAGATTCTGTTCTTGCGGTCGAGAGTGTGCTTGTATGCACCGATCTAACC ACCGGATGGATCGCGCGGTGGCTTCACGGAAGCGGTCGTCGTTCTCAGTG ACAGAAGACACGACATCGTCAAGCTGCATCATTATATCGGACCCTATCCG GTTTTGGTGCGCAATGGACATCTCAGGCGTCAGCAGCATCTGCGTCCCAT CGATAGGGCTTTGAAACGTCACACCTTCCTCCGTGATCTCGGCCAAGGCC AAGAGGGAGACCATCTGGAATCCTCCCGAGTCGGTGAGGAGGTTGCGAGG CCAGTTCATAAATTTGTGCAAGCCCCCCATTTCCTCCAGCAGGTCCGTCC CCGGCTGCAAGGCGAGGTGGTATGTGTTCCCCAGAATAATCTGAGGAGAA AGTTCTGGATGGAGTAATTGTTCGGTTGGGATGCCTTTAATTGTGCCCTT GGTGCCCACGGGCATGAAGACAGGCGTCGCGAGGGGACCGTGGGGCAAGT GGACGGTGGCGGCCCTTGCGCGTCGCCATCGAGCGTGGATGTGAAAGCAG AGGGCAGGGGAGGCCGCCGTGAATGTGGGCGGGATACCTTCCTCGACGAG AGGTGGTGCGGAAATTGGTGGGGGTGGTGACACTTCGGTCTCGTCGGGCA TGAGGCCAGGGATGGTGGTGGGTAGGAGGATGCGAAAAGTAGTGGTGGAA GCAGAGGCGGGAGGAGGGTTCCAACGAGGCCGGCTTCTGCAGGAACTGAT GCTGATGCTAGTGCTGCTGGTGGTGACTGCCTGTGTGATGTGTTGACAAT AAGTAAAATGATTGTATGGGTTAGCGCCCAGAGAGCGAGGGAGGAGGTCA ACGCTTCTCCCGACACATCTCTTCAACCAACGGCCACGAGCCGCAGCCCT CCAAAACATATAACAACACATCCATGCATATACTGAATGTCCGCCCTTTA CTTCCACGTCCCCGAAAAATAGAAGGCGTTAACCCGTATCCCCTGTACAA TGTCCAACTACAGAGAGCGCCCCCCCATCACAGAGACGGGCAGGCAGGGC TGAGGCGAAGACCGACACGGCACCATCATGAGGCTCCCCTCCTCCTCAAC CCTCCTCCATGCCCTTCCCCAATCTCTACCCCTCCTCCTCATGCACACAT TTTTGACTCTGCCCTTTCTTCTGTTCTGCGTGGCTGGACTCCTGTCTCTG CGCCCTTCCCACGCCCGTCGCAACCTCGGATTGTCCTGCCTGTATGTTGG GCGAGTCTGGCACGTGCGCTTCCTCCCGACCATCCACAAGTTCGGATACG GCCTCTTTTACACGTATTTGGACCTCGGTAAGAAGGTAATCACAGGGGAG AAATGTGTCCTCATCTCCTCCCCTCAACACCCCGACTTTCTTTCTCCCTC CTTCCTCCTTCCAGACCACCTCCCTCAGACCTTCAGTGGACTGTGGCCTC TCGCTTCCTTCTCGACCCTTGCCGCCCCCTCCCTCCTTCCCGCCCTCGCC CACTTCCATGAAGCCGACCACTTGAAAGATATCCCCATCCAGTACGCTTC ATCCTCGCTCCCTTCCAACTCCTCTTCTTCCCCGCCCAAGGAGGGAGGGA AGGAGGGAGGGCAGCAGCGACCACTCGTGCCTCTACCACTGGTAGAAAGG GTGCGGCGGTTGGTGGAGAAAGAAACAGGCAAGCGGCCTAAGGGTAAAAT TTGCCTTTTGACACATTTAAGATACATGGGTTATACATTCAACCCGGTCA GTTTTTACTATGTGTGGGATGAAGAGGGCCAGCATCTTGAGACAGTCGTG GCTGAGGTAAGCAACACCCCTTGGAATGAGATGCACTGCTACGTCCTCAG CCCGCACGCGGCCAATGTCTCCGCCGTGAAAAAATGGAGGAAAAGACAGA AAATGAAGGACGGAGGGGAGGATGACGAAGGCGGGAAGGAGGAAGAGGTG TGGAACTACGTGTTCGAAAAGACGTTTCATGTCTCGCCGTTTATGGACAT GGCCCATATCTACGATTGGGAGTTTGTGGGGCCGAGGGAGGGAGGAAGGA AGAAAGGGAGGGAGGGAGGGGCAGGCACTGGGATGTGGGTGACGACGCAC ATGCTCAAGAAGGAGAGCAGGGAACGCTATTTCACGGCCCACTTCTCCAT GGATCATCGCCCATTCTCCCTCCTCTCCTTCGCCTGGTGCGTCCTCCGTT TCCCCCTCATCACCTGGGCAGTCCAATTTCTAATCCATTTCCAGGCCTTC AAACTCTGGGCAAAAAAGGTGCCTTTCTACGACCATCCAGAAGGCACTCA GACCTGGGCCTCGGCCGCCGTGGGCACTTTGATGGCTCCTCTGTGGAAGC TCCAAGCCCGGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGAAGAAG ACGGAGTAG back to topprotein sequence of NO17G02730.2 >NO17G02730.2-protein ID=NO17G02730.2-protein|Name=NO17G02730.2|organism=Nannochloropsis oceanica|type=polypeptide|length=444bp MRLPSSSTLLHALPQSLPLLLMHTFLTLPFLLFCVAGLLSLRPSHARRNL GLSCLYVGRVWHVRFLPTIHKFGYGLFYTYLDLGKKVITGEKCVLISSPQ HPDFLSPSFLLPDHLPQTFSGLWPLASFSTLAAPSLLPALAHFHEADHLK DIPIQYASSSLPSNSSSSPPKEGGKEGGQQRPLVPLPLVERVRRLVEKET GKRPKGKICLLTHLRYMGYTFNPVSFYYVWDEEGQHLETVVAEVSNTPWN EMHCYVLSPHAANVSAVKKWRKRQKMKDGGEDDEGGKEEEVWNYVFEKTF HVSPFMDMAHIYDWEFVGPREGGRKKGREGGAGTGMWVTTHMLKKESRER YFTAHFSMDHRPFSLLSFAWCVLRFPLITWAVQFLIHFQAFKLWAKKVPF YDHPEGTQTWASAAVGTLMAPLWKLQARQQQQQQQQQQQKKTE* back to topmRNA from alignment at chr17:799654..803939- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO17G02730.2 ID=NO17G02730.2|Name=NO17G02730.2|organism=Nannochloropsis oceanica|type=mRNA|length=4286bp|location=Sequence derived from alignment at chr17:799654..803939- (Nannochloropsis oceanica) CTTGGCACTTTAATACATTCTTTTACATGGCATGTACATTGCTCCCGGCT
AATCTTTTTCAATTTCTCCCTCACTCTGAAATGTCTGTGGCACTTCAATG
CCCGCTACACCCAGCGCTTCCCTCACCCACTCAGGCACTGTCACATCTAC
TTTTTCTCCTTTCTTCCCAGCAATCTCACCAGAATAGTGAGCTTTCAAAA
ACGCCAATACAAAGCTAGGAAAAGCGTCTCCTCCCTCCATAATCGCCTTT
CGCATTCTTCGCATCAATCCGAGCATGTAAGCGAGGTTGTGGTACGTGAC
TAATTGACACCCCAGAGCTCCCGACTTGAGCAACCGGTGTATCGCTGCGC
GCGAGTAGTTCTTGCACGTCATGCACTGACACCCCTCTTCGATAGGTTTG
CCCGTCTCATTCCCACATGCGTTGTTCTTAAGCTTCAAAACCCCCGTTCC
AACAAGCGCGACGCCAAATCTGGCCGTGCGAGTGGGGTAGACACAGTCAT
ACATATCCACGCCCAACGCCGTGCACACCACCAAGTCTAGCGGATAGCCG
ACACCCATCAAATACCTCGGTTTCCCCTCGGGTAAACCCGCGGCAGACTG
TGCCACCACCTTCCAAAATGCTTCCTTGCTCTCTCCACCCGCTAGACCCC
CAATCGCGTAACCTGGACAGTCGCGGGCGATCATTTCGCGCAGGCACCCT
TCCCGCAATCCGCCCGGGGAAGTATCCAACCCCCCCTGAATGATGCCGAA
CAGATTCTGTTCTTGCGGTCGAGAGTGTGCTTGTATGCACCGATCTAACC
ACCGGATGGATCGCGCGGTGGCTTCACGGAAGCGGTCGTCGTTCTCAGTG
ACAGAAGACACGACATCGTCAAGCTGCATCATTATATCGGACCCTATCCG
GTTTTGGTGCGCAATGGACATCTCAGGCGTCAGCAGCATCTGCGTCCCAT
CGATAGGGCTTTGAAACGTCACACCTTCCTCCGTGATCTCGGCCAAGGCC
AAGAGGGAGACCATCTGGAATCCTCCCGAGTCGGTGAGGAGGTTGCGAGG
CCAGTTCATAAATTTGTGCAAGCCCCCCATTTCCTCCAGCAGGTCCGTCC
CCGGCTGCAAGGCGAGGTGGTATGTGTTCCCCAGAATAATCTGAGGAGAA
AGTTCTGGATGGAGTAATTGTTCGGTTGGGATGCCTTTAATTGTGCCCTT
GGTGCCCACGGGCATGAAGACAGGCGTCGCGAGGGGACCGTGGGGCAAGT
GGACGGTGGCGGCCCTTGCGCGTCGCCATCGAGCGTGGATGTGAAAGCAG
AGGGCAGGGGAGGCCGCCGTGAATGTGGGCGGGATACCTTCCTCGACGAG
AGGTGGTGCGGAAATTGGTGGGGGTGGTGACACTTCGGTCTCGTCGGGCA
TGAGGCCAGGGATGGTGGTGGGTAGGAGGATGCGAAAAGTAGTGGTGGAA
GCAGAGGCGGGAGGAGGGTTCCAACGAGGCCGGCTTCTGCAGGAACTGAT
GCTGATGCTAGTGCTGCTGGTGGTGACTGCCTGTGTGATGTGTTGACAAT
AAGTAAAATGATTGTATGGGTTAGCGCCCAGAGAGCGAGGGAGGAGGTCA
ACGCTTCTCCCGACACATCTCTTCAACCAACGGCCACGAGCCGCAGCCCT
CCAAAACATATAACAACACATCCATGCATATACTGAATGTCCGCCCTTTA
CTTCCACGTCCCCGAAAAATAGAAGGCGTTAACCCGTATCCCCTGTACAA
TGTCCAACTACAGAGAGCGCCCCCCCATCACAGAGACGGGCAGGCAGGGC
TGAGGCGAAGACCGACACGGCACCATCATGAGGCTCCCCTCCTCCTCAAC
CCTCCTCCATGCCCTTCCCCAATCTCTACCCCTCCTCCTCATGCACACAT
TTTTGACTCTGCCCTTTCTTCTGTTCTGCGTGGCTGGACTCCTGTCTCTG
CGCCCTTCCCACGCCCGTCGCAACCTCGGATTGTCCTGCCTGTATGTTGG
GCGAGTCTGGCACGTGCGCTTCCTCCCGACCATCCACAAGTTCGGATACG
GCCTCTTTTACACGTATTTGGACCTCGGTAAGAAGGTAATCACAGGGGAG
AAATGTGTCCTCATCTCCTCCCCTCAACACCCCGACTTTCTTTCTCCCTC
CTTCCTCCTTCCAGACCACCTCCCTCAGACCTTCAGTGGACTGTGGCCTC
TCGCTTCCTTCTCGACCCTTGCCGCCCCCTCCCTCCTTCCCGCCCTCGCC
CACTTCCATGAAGCCGACCACTTGAAAGATATCCCCATCCAGTACGCTTC
ATCCTCGCTCCCTTCCAACTCCTCTTCTTCCCCGCCCAAGGAGGGAGGGA
AGGAGGGAGGGCAGCAGCGACCACTCGTGCCTCTACCACTGGTAGAAAGG
GTGCGGCGGTTGGTGGAGAAAGAAACAGGCAAGCGGCCTAAGGGTAAAAT
TTGCCTTTTGACACATTTAAGATACATGGGTTATACATTCAACCCGGTCA
GTTTTTACTATGTGTGGGATGAAGAGGTACGGAACGAGGGAGGGAGGGAG
GGCGGGAGAGAGAGAGGGAAGGACAGACAGACTTGATCGTTGGACTGTAC
TTACCATTTTTCTTCCCTCCCTTTCCCCTTCCAGGGCCAGCATCTTGAGA
CAGTCGTGGCTGAGGTAAGCAACACCCCTTGGAATGAGATGCACTGCTAC
GTCCTCAGCCCGCACGCGGCCAATGTCTCCGCCGTGAAAAAATGGAGGAA
AAGACAGAAAATGAAGGACGGAGGGGAGGATGACGAAGGCGGGAAGGAGG
AAGAGGTGTGGAACTACGTGTTCGAAAAGACGTTTCATGTCTCGCCGTTT
ATGGACATGGCCCATATCTACGATTGGGAGTTTGTGGGGCCGAGGGAGGG
AGGAAGGAAGAAAGGGAGGGAGGGAGGGGCAGGCACTGGGATGTGGGTGA
CGACGCACATGCTCAAGAAGGAGAGCAGGGAACGGTAGGGGCATTGGAGG
GAGGGAAGGAGGGATAGGTGGATGGAGGGAGGGAGGGAAGGAGGGAGGGG
TACCTGGATCCGGGTATGTGTGAACCTAAGTGTTCTCTCTCTCCTGCCTT
CCTGGTATATAGTGTGTGTGTGTGTGTGTGTGCATGTCTCCTGCCTGACG
TGGATCCGGGTATGTGTGAACCTAAGTGTTCTCTCTCTTCCTTGTCTCTT
CCGAAATCCGGGAGAGACTTTGGAGGATTTTTATTTCCCATGTTGTAGCA
GCAGCGGCAGCAGCGGCAGCAGCACATTAATGTTTGTCCTCCCGGGCTCG
CCTACTCGCAATTGGTTCGACCGTACCCGGAAGGCTCATCCCATGTGCCA
TAGCAGACTCTTACTCCTCGCGCCCTTTTATTCCCTCCCTGCCTCGCGCT
CTAGAGGCAGGGGGGGGGGGTGCGTCGGGATATACCATAATTATACCTCT
TGCCCTCTTTTCCTCCTTCCGCGGCCATCTGCGCGATTTTGTTTTCTTTC
CTTCCCTCTTGATGTTCTCCTCTCCTTGCCCAGGCTTGTGTGTGGTTTTG
TCCCTACCCCCGTTGGCTTTTGCTCTCTCGCTTCTACCATGACCCTGCTA
TCTACCATTCGCCTTATCCTTCCCTCCCTCCCTTCCTCCGTCCCTTCCTC
CTTCCCTCCCTCCCTCCCTTCCTCCCTCCCTTCCTCCCTCCCTTCCTCCC
TCCCTTCCCAGCTATTTCACGGCCCACTTCTCCATGGATCATCGCCCATT
CTCCCTCCTCTCCTTCGCCTGGTGCGTCCTCCGTTTCCCCCTCATCACCT
GGGCAGTCCAATTTCTAATCCATTTCCAGGTAGGCAGGCAGGGAGGGAGG
GAGGGAGGGACGGACGGAGGAAGGGGAGGATTAGCACAGCAGGGAGGGGG
GCAACGTACTGATTTCTAGAACGTTTTTGTAATTTAAATTTTTAAAAATG
GTCACAGGCCTTCAAACTCTGGGCAAAAAAGGTGCCTTTCTACGACCATC
CAGAAGTAAGCCCCTTCCTCCCTTTCTCCCTCCCTCCCTCCCTCCCTCCC
TCCCTCCCTCTTTTGTGGATGCCTACAGGAATGAAGTGCTTTATCAAAAG
TAAGTTGACGTTTTCTTTTCAACACCTGCCCTCCTTTCCCTTTCCTCCCT
TCCTCCTACCCTCCCTCAGGGCACTCAGACCTGGGCCTCGGCCGCCGTGG
GCACTTTGATGGCTCCTCTGTGGAAGCTCCAAGCCCGGCAGCAGCAGCAG
CAGCAGCAGCAGCAGCAGCAGAAGAAGACGGAGTAG back to topCoding sequence (CDS) from alignment at chr17:799654..803939- >NO17G02730.2 ID=NO17G02730.2|Name=NO17G02730.2|organism=Nannochloropsis oceanica|type=CDS|length=1332bp|location=Sequence derived from alignment at chr17:799654..803939- (Nannochloropsis oceanica) ATGAGGCTCCCCTCCTCCTCAACCCTCCTCCATGCCCTTCCCCAATCTCT ACCCCTCCTCCTCATGCACACATTTTTGACTCTGCCCTTTCTTCTGTTCT GCGTGGCTGGACTCCTGTCTCTGCGCCCTTCCCACGCCCGTCGCAACCTC GGATTGTCCTGCCTGTATGTTGGGCGAGTCTGGCACGTGCGCTTCCTCCC GACCATCCACAAGTTCGGATACGGCCTCTTTTACACGTATTTGGACCTCG GTAAGAAGGTAATCACAGGGGAGAAATGTGTCCTCATCTCCTCCCCTCAA CACCCCGACTTTCTTTCTCCCTCCTTCCTCCTTCCAGACCACCTCCCTCA GACCTTCAGTGGACTGTGGCCTCTCGCTTCCTTCTCGACCCTTGCCGCCC CCTCCCTCCTTCCCGCCCTCGCCCACTTCCATGAAGCCGACCACTTGAAA GATATCCCCATCCAGTACGCTTCATCCTCGCTCCCTTCCAACTCCTCTTC TTCCCCGCCCAAGGAGGGAGGGAAGGAGGGAGGGCAGCAGCGACCACTCG TGCCTCTACCACTGGTAGAAAGGGTGCGGCGGTTGGTGGAGAAAGAAACA GGCAAGCGGCCTAAGGGTAAAATTTGCCTTTTGACACATTTAAGATACAT GGGTTATACATTCAACCCGGTCAGTTTTTACTATGTGTGGGATGAAGAGG GCCAGCATCTTGAGACAGTCGTGGCTGAGGTAAGCAACACCCCTTGGAAT GAGATGCACTGCTACGTCCTCAGCCCGCACGCGGCCAATGTCTCCGCCGT GAAAAAATGGAGGAAAAGACAGAAAATGAAGGACGGAGGGGAGGATGACG AAGGCGGGAAGGAGGAAGAGGTGTGGAACTACGTGTTCGAAAAGACGTTT CATGTCTCGCCGTTTATGGACATGGCCCATATCTACGATTGGGAGTTTGT GGGGCCGAGGGAGGGAGGAAGGAAGAAAGGGAGGGAGGGAGGGGCAGGCA CTGGGATGTGGGTGACGACGCACATGCTCAAGAAGGAGAGCAGGGAACGC TATTTCACGGCCCACTTCTCCATGGATCATCGCCCATTCTCCCTCCTCTC CTTCGCCTGGTGCGTCCTCCGTTTCCCCCTCATCACCTGGGCAGTCCAAT TTCTAATCCATTTCCAGGCCTTCAAACTCTGGGCAAAAAAGGTGCCTTTC TACGACCATCCAGAAGGCACTCAGACCTGGGCCTCGGCCGCCGTGGGCAC TTTGATGGCTCCTCTGTGGAAGCTCCAAGCCCGGCAGCAGCAGCAGCAGC AGCAGCAGCAGCAGCAGAAGAAGACGGAGTAG back to top
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