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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr17 | genome | chr17:686843..688621 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO17G02340.1 vs.
Match: EWM24176.1 (hypothetical protein Naga_100955g1 [Nannochloropsis gaditana]) HSP 1 Score: 366.7 bits (940), Expect = 1.400e-97 Identity = 261/581 (44.92%), Postives = 328/581 (56.45%), Query Frame = 0
Query: 4 LFFYLGLWAAAAFLRYRTLRQGLLPWSRRRGRYTWSFTGWAIVWECKTSSSSFPFASSLPLHRSTENNNERERDPPYYENGKADKKKSFLLKDNLSIVAFIIGQVLVILFLAWNCCVTLLQSSFSSSSFSSS-SLPPSFSDDYGRTHQHEQHRRLSTAIPS--SFSSSYS--SYSPFPFSFHIATYLKPLSLLPSSSS----SSSPSSLLLLWLASLLSLLIHEWGHARWAIKEGIGYQAFGVYLALGLLPGAYVLLDPSLLSSLPPLPQLRVICAGIWHNLLLCICLAFLLLTDLASWPVSTTNQGILLLPPPAFLPPSSPLFHLLRPGEILSSLQDTPTPSLSTYYSLLEQQVNLTAHRARALSSLIPNPQMANATITRLLENLLPAL-PFPNPPFLPPIAAVDTAGLLQSETFCTSLNLLSPQHMKGGKEGGKDGR-RLPHCCTFDALTGEEGKEGERG---KEANEGATCFAAFDLLLKQQLFPTPPPSLSTSFPPSSSFVTLTCLPARDVLLHSTLFSSAPPSLPPSSICLRPVNLPPNVLLKLTLSSSHVLAYEGPLHPFLPPISPPPSSLTIIP 571
LF+ L +WA A+ +R R RQ P R GR T S T AIV E K S S + +LPL P + +K++ N S++ F +GQ+LV LFLAWN TLL S+F+ S SLP S + + + RRLSTA S SF +S S ++ P +FH+AT L+PLSLL ++ +SS S +LWLAS LSL IHEWGHAR A+KEGIGYQA GVY A GL PGAYV+LDP LL +LPPL QLR++ AG+W NLLLC+ LL +L +ST G+L LPPP LPPSSPL L RPG +L+SLQD TPSL + ++ Q+ + RA A + IP+P ANAT+T LL L P P PF I AV+ GLLQ++TFCTSL +P H + ++GR RLP CCTF+ALTG +G++ +RG +E TCFAA+DL + P+ S S+ FP SSFVTL CLPARDV+LHSTL PP PP PP P P LPP PPP I P
Sbjct: 7 LFYCLLVWAVASLIRCRRQRQNASPCVYRYGRCTVSLTSLAIVGEIKASGSRSASSPALPLPSVL----------PLARHQAPRSRKAWCQGQNFSVLVFSVGQILVCLFLAWNLGYTLLHSTFTWPRLGPSISLPSHHSPNLPA--ERPRPRRLSTASSSMSSFPASPSGPTHPPSSTAFHVATRLRPLSLLSPATGHNTLTSSAPSWFILWLASFLSLSIHEWGHARQAVKEGIGYQAIGVYFAFGLFPGAYVILDPFLLRALPPLAQLRILAAGVWQNLLLCLFTGLLLFFNLLPSLLSTPTSGLLFLPPP--LPPSSPLASLFRPGHVLASLQDLSTPSLPAWEEAVQIQIEKISQRASAFRNGIPSPHEANATVTLLLHALPPPTPPSTTSPFSSKIEAVERTGLLQADTFCTSLPPFAPHHFQ------QEGRGRLPTCCTFEALTG-QGRDRKRGAGEEEEGRDTTCFAAYDLGVGTSSLPS---SSSSLFPHHSSFVTLACLPARDVILHSTLSPPPPPPPPP----------PP------------------PPPPPLPPPPPPPPPPRIFP 535
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO17G02340.1 ID=NO17G02340.1|Name=NO17G02340.1|organism=Nannochloropsis oceanica|type=mRNA|length=1779bp ATGAGCTTTCTCTTCTTCTACCTGGGGCTCTGGGCCGCTGCTGCCTTTTT GCGCTATCGTACCTTGCGGCAGGGCTTGCTTCCCTGGTCACGCAGAAGGG GGCGATACACCTGGAGTTTCACAGGATGGGCTATCGTGTGGGAGTGCAAG ACTTCCTCAAGTTCCTTTCCATTTGCGTCCTCTCTGCCCCTCCACCGGAG CACTGAGAACAACAATGAGCGCGAACGTGACCCTCCATACTATGAAAACG GCAAAGCGGACAAGAAAAAGAGCTTTCTTCTCAAGGATAATCTCAGTATT GTGGCGTTTATCATCGGGCAGGTCCTTGTCATCCTTTTTCTTGCCTGGAA TTGCTGTGTTACTCTCCTTCAATCTTCCTTTTCCTCCTCCTCCTTCTCCT CCTCTTCTCTCCCTCCGTCCTTTTCCGACGATTACGGCCGCACCCACCAG CACGAGCAACACCGTCGTCTTTCTACCGCCATCCCTTCTTCCTTCTCCTC TTCCTATTCCTCCTACTCTCCCTTCCCCTTCTCCTTCCACATCGCCACCT ACCTCAAGCCCCTCTCCCTCCTCCCCTCCTCCTCCTCTTCCTCTTCCCCC TCCTCCCTCCTTCTCCTCTGGCTCGCCTCCCTACTCTCCCTCCTCATCCA CGAATGGGGCCATGCTCGGTGGGCCATCAAAGAAGGCATAGGATATCAAG CCTTTGGTGTCTACCTCGCCCTTGGCCTCCTCCCAGGTGCCTACGTCCTC CTCGACCCCTCCCTCCTTTCCTCCCTCCCTCCACTCCCCCAGCTTCGAGT CATCTGCGCCGGGATTTGGCACAACCTTCTGCTTTGCATTTGCCTCGCCT TTCTCCTCCTCACGGACCTTGCCTCTTGGCCAGTCTCCACCACCAACCAA GGCATCCTCCTCCTCCCTCCCCCTGCTTTCCTCCCTCCCTCCTCCCCCCT CTTCCACCTCCTCCGCCCCGGCGAGATCCTTTCCTCCCTCCAAGACACCC CCACGCCTTCCCTCTCTACCTACTACTCCCTCCTCGAGCAGCAAGTGAAT CTCACGGCCCATAGAGCCCGTGCCCTCTCCTCCTTAATCCCTAATCCACA AATGGCCAACGCCACCATCACCCGTCTCCTCGAAAACCTCCTTCCCGCCC TCCCTTTCCCCAACCCTCCCTTCCTCCCTCCCATTGCCGCAGTAGACACG GCAGGCTTGCTGCAATCCGAGACATTTTGCACTTCACTCAACCTCCTCTC TCCCCAGCATATGAAGGGTGGGAAGGAGGGAGGGAAGGACGGTAGACGCC TCCCGCATTGTTGTACGTTTGATGCACTGACCGGTGAGGAAGGTAAGGAG GGAGAGAGGGGCAAAGAGGCCAACGAAGGAGCGACGTGCTTCGCTGCCTT TGATCTGCTGCTAAAGCAGCAACTTTTCCCCACTCCTCCTCCCTCCCTCT CAACCTCCTTCCCTCCCTCCTCCTCTTTCGTCACCCTCACCTGCCTTCCC GCCCGCGACGTCCTCCTCCACTCCACCCTCTTTTCTTCGGCCCCTCCCTC CCTCCCTCCCTCCTCCATTTGCCTTCGTCCCGTCAACCTCCCTCCCAACG TCCTCCTCAAACTCACACTTTCCTCCTCCCACGTCCTCGCCTACGAGGGC CCCCTCCACCCCTTCCTCCCCCCCATCTCCCCCCCTCCCTCATCACTGAC CATCATCCCCGACCCTGGCTCAAGGCTGTCCTCCCTCCCTCCCTGGCCCT CGCCCTCTCCCCCTTCCTCCTGCGGTTGA back to topprotein sequence of NO17G02340.1 >NO17G02340.1-protein ID=NO17G02340.1-protein|Name=NO17G02340.1|organism=Nannochloropsis oceanica|type=polypeptide|length=593bp MSFLFFYLGLWAAAAFLRYRTLRQGLLPWSRRRGRYTWSFTGWAIVWECK TSSSSFPFASSLPLHRSTENNNERERDPPYYENGKADKKKSFLLKDNLSI VAFIIGQVLVILFLAWNCCVTLLQSSFSSSSFSSSSLPPSFSDDYGRTHQ HEQHRRLSTAIPSSFSSSYSSYSPFPFSFHIATYLKPLSLLPSSSSSSSP SSLLLLWLASLLSLLIHEWGHARWAIKEGIGYQAFGVYLALGLLPGAYVL LDPSLLSSLPPLPQLRVICAGIWHNLLLCICLAFLLLTDLASWPVSTTNQ GILLLPPPAFLPPSSPLFHLLRPGEILSSLQDTPTPSLSTYYSLLEQQVN LTAHRARALSSLIPNPQMANATITRLLENLLPALPFPNPPFLPPIAAVDT AGLLQSETFCTSLNLLSPQHMKGGKEGGKDGRRLPHCCTFDALTGEEGKE GERGKEANEGATCFAAFDLLLKQQLFPTPPPSLSTSFPPSSSFVTLTCLP ARDVLLHSTLFSSAPPSLPPSSICLRPVNLPPNVLLKLTLSSSHVLAYEG PLHPFLPPISPPPSSLTIIPDPGSRLSSLPPWPSPSPPSSCG* back to topmRNA from alignment at chr17:686843..688621+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO17G02340.1 ID=NO17G02340.1|Name=NO17G02340.1|organism=Nannochloropsis oceanica|type=mRNA|length=1779bp|location=Sequence derived from alignment at chr17:686843..688621+ (Nannochloropsis oceanica) ATGAGCTTTCTCTTCTTCTACCTGGGGCTCTGGGCCGCTGCTGCCTTTTT
GCGCTATCGTACCTTGCGGCAGGGCTTGCTTCCCTGGTCACGCAGAAGGG
GGCGATACACCTGGAGTTTCACAGGATGGGCTATCGTGTGGGAGTGCAAG
ACTTCCTCAAGTTCCTTTCCATTTGCGTCCTCTCTGCCCCTCCACCGGAG
CACTGAGAACAACAATGAGCGCGAACGTGACCCTCCATACTATGAAAACG
GCAAAGCGGACAAGAAAAAGAGCTTTCTTCTCAAGGATAATCTCAGTATT
GTGGCGTTTATCATCGGGCAGGTCCTTGTCATCCTTTTTCTTGCCTGGAA
TTGCTGTGTTACTCTCCTTCAATCTTCCTTTTCCTCCTCCTCCTTCTCCT
CCTCTTCTCTCCCTCCGTCCTTTTCCGACGATTACGGCCGCACCCACCAG
CACGAGCAACACCGTCGTCTTTCTACCGCCATCCCTTCTTCCTTCTCCTC
TTCCTATTCCTCCTACTCTCCCTTCCCCTTCTCCTTCCACATCGCCACCT
ACCTCAAGCCCCTCTCCCTCCTCCCCTCCTCCTCCTCTTCCTCTTCCCCC
TCCTCCCTCCTTCTCCTCTGGCTCGCCTCCCTACTCTCCCTCCTCATCCA
CGAATGGGGCCATGCTCGGTGGGCCATCAAAGAAGGCATAGGATATCAAG
CCTTTGGTGTCTACCTCGCCCTTGGCCTCCTCCCAGGTGCCTACGTCCTC
CTCGACCCCTCCCTCCTTTCCTCCCTCCCTCCACTCCCCCAGCTTCGAGT
CATCTGCGCCGGGATTTGGCACAACCTTCTGCTTTGCATTTGCCTCGCCT
TTCTCCTCCTCACGGACCTTGCCTCTTGGCCAGTCTCCACCACCAACCAA
GGCATCCTCCTCCTCCCTCCCCCTGCTTTCCTCCCTCCCTCCTCCCCCCT
CTTCCACCTCCTCCGCCCCGGCGAGATCCTTTCCTCCCTCCAAGACACCC
CCACGCCTTCCCTCTCTACCTACTACTCCCTCCTCGAGCAGCAAGTGAAT
CTCACGGCCCATAGAGCCCGTGCCCTCTCCTCCTTAATCCCTAATCCACA
AATGGCCAACGCCACCATCACCCGTCTCCTCGAAAACCTCCTTCCCGCCC
TCCCTTTCCCCAACCCTCCCTTCCTCCCTCCCATTGCCGCAGTAGACACG
GCAGGCTTGCTGCAATCCGAGACATTTTGCACTTCACTCAACCTCCTCTC
TCCCCAGCATATGAAGGGTGGGAAGGAGGGAGGGAAGGACGGTAGACGCC
TCCCGCATTGTTGTACGTTTGATGCACTGACCGGTGAGGAAGGTAAGGAG
GGAGAGAGGGGCAAAGAGGCCAACGAAGGAGCGACGTGCTTCGCTGCCTT
TGATCTGCTGCTAAAGCAGCAACTTTTCCCCACTCCTCCTCCCTCCCTCT
CAACCTCCTTCCCTCCCTCCTCCTCTTTCGTCACCCTCACCTGCCTTCCC
GCCCGCGACGTCCTCCTCCACTCCACCCTCTTTTCTTCGGCCCCTCCCTC
CCTCCCTCCCTCCTCCATTTGCCTTCGTCCCGTCAACCTCCCTCCCAACG
TCCTCCTCAAACTCACACTTTCCTCCTCCCACGTCCTCGCCTACGAGGGC
CCCCTCCACCCCTTCCTCCCCCCCATCTCCCCCCCTCCCTCATCACTGAC
CATCATCCCCGACCCTGGCTCAAGGCTGTCCTCCCTCCCTCCCTGGCCCT
CGCCCTCTCCCCCTTCCTCCTGCGGTTGA back to topCoding sequence (CDS) from alignment at chr17:686843..688621+ >NO17G02340.1 ID=NO17G02340.1|Name=NO17G02340.1|organism=Nannochloropsis oceanica|type=CDS|length=1779bp|location=Sequence derived from alignment at chr17:686843..688621+ (Nannochloropsis oceanica) ATGAGCTTTCTCTTCTTCTACCTGGGGCTCTGGGCCGCTGCTGCCTTTTT GCGCTATCGTACCTTGCGGCAGGGCTTGCTTCCCTGGTCACGCAGAAGGG GGCGATACACCTGGAGTTTCACAGGATGGGCTATCGTGTGGGAGTGCAAG ACTTCCTCAAGTTCCTTTCCATTTGCGTCCTCTCTGCCCCTCCACCGGAG CACTGAGAACAACAATGAGCGCGAACGTGACCCTCCATACTATGAAAACG GCAAAGCGGACAAGAAAAAGAGCTTTCTTCTCAAGGATAATCTCAGTATT GTGGCGTTTATCATCGGGCAGGTCCTTGTCATCCTTTTTCTTGCCTGGAA TTGCTGTGTTACTCTCCTTCAATCTTCCTTTTCCTCCTCCTCCTTCTCCT CCTCTTCTCTCCCTCCGTCCTTTTCCGACGATTACGGCCGCACCCACCAG CACGAGCAACACCGTCGTCTTTCTACCGCCATCCCTTCTTCCTTCTCCTC TTCCTATTCCTCCTACTCTCCCTTCCCCTTCTCCTTCCACATCGCCACCT ACCTCAAGCCCCTCTCCCTCCTCCCCTCCTCCTCCTCTTCCTCTTCCCCC TCCTCCCTCCTTCTCCTCTGGCTCGCCTCCCTACTCTCCCTCCTCATCCA CGAATGGGGCCATGCTCGGTGGGCCATCAAAGAAGGCATAGGATATCAAG CCTTTGGTGTCTACCTCGCCCTTGGCCTCCTCCCAGGTGCCTACGTCCTC CTCGACCCCTCCCTCCTTTCCTCCCTCCCTCCACTCCCCCAGCTTCGAGT CATCTGCGCCGGGATTTGGCACAACCTTCTGCTTTGCATTTGCCTCGCCT TTCTCCTCCTCACGGACCTTGCCTCTTGGCCAGTCTCCACCACCAACCAA GGCATCCTCCTCCTCCCTCCCCCTGCTTTCCTCCCTCCCTCCTCCCCCCT CTTCCACCTCCTCCGCCCCGGCGAGATCCTTTCCTCCCTCCAAGACACCC CCACGCCTTCCCTCTCTACCTACTACTCCCTCCTCGAGCAGCAAGTGAAT CTCACGGCCCATAGAGCCCGTGCCCTCTCCTCCTTAATCCCTAATCCACA AATGGCCAACGCCACCATCACCCGTCTCCTCGAAAACCTCCTTCCCGCCC TCCCTTTCCCCAACCCTCCCTTCCTCCCTCCCATTGCCGCAGTAGACACG GCAGGCTTGCTGCAATCCGAGACATTTTGCACTTCACTCAACCTCCTCTC TCCCCAGCATATGAAGGGTGGGAAGGAGGGAGGGAAGGACGGTAGACGCC TCCCGCATTGTTGTACGTTTGATGCACTGACCGGTGAGGAAGGTAAGGAG GGAGAGAGGGGCAAAGAGGCCAACGAAGGAGCGACGTGCTTCGCTGCCTT TGATCTGCTGCTAAAGCAGCAACTTTTCCCCACTCCTCCTCCCTCCCTCT CAACCTCCTTCCCTCCCTCCTCCTCTTTCGTCACCCTCACCTGCCTTCCC GCCCGCGACGTCCTCCTCCACTCCACCCTCTTTTCTTCGGCCCCTCCCTC CCTCCCTCCCTCCTCCATTTGCCTTCGTCCCGTCAACCTCCCTCCCAACG TCCTCCTCAAACTCACACTTTCCTCCTCCCACGTCCTCGCCTACGAGGGC CCCCTCCACCCCTTCCTCCCCCCCATCTCCCCCCCTCCCTCATCACTGAC CATCATCCCCGACCCTGGCTCAAGGCTGTCCTCCCTCCCTCCCTGGCCCT CGCCCTCTCCCCCTTCCTCCTGCGGTTGA back to top
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