NO17G02320.1, NO17G02320.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO17G02320.1
Unique Name	NO17G02320.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1362
Alignment location	chr17:682710..686288 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr17	genome	chr17:682710..686288 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO17G02320.1 vs.
Match: CBJ29720.1 (1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplast precursor [Ectocarpus siliculosus])

HSP 1 Score: 587.0 bits (1512), Expect = 4.900e-164
Identity = 283/415 (68.19%), Postives = 344/415 (82.89%), Query Frame = 0

Query:   34 AAPSNTAESLRQTVDLALSPESKKRKISLLGSTGSIGTQTLDIVTERSDIYEVTALAAGNNIDLLAQQIKQFRPAIASVQDESRLPALKAKLTELGVPPSEWPELGAGQDGVIACATEKDADVVVTGIVGCAGLIPTVEAIKARKTIALANKETLISGGPAIVPLLKQYGVNVIPADSEHSAIFQSLQGVPPGGLRRIILTASGGAFRDWPVEDLKKVTVADALKHPNWDMGAKITVDSATMMNKGLEVIEAHYLFGTAYDDIDVVIHPQSIIHSLIETQDTSMIGQLGWPDMRLPILYSISWPHRIPMNYKPLDLVALGSLTFKAPDNKKYPCIQLAYAAGRAGGTMTAALNAANERANEIFRQEKIGYLDIAKVVEGTMESHKKDWKEMPSLEDIIAVDAWARVRVDELAEKL 449
            A+P NT E+ ++T+DLAL     K+KI+LLGSTGSIGTQTLDI  E+ + +EV +LAAG+N+DLLA+QI  F+P + SV  E  +PAL+ +L+++GV  ++ P + +G +G++A A   DAD VVTGIVGCAGL+PTVEAIK +KTIALANKETLI+GGPA++PLLK+YGV+++PADSEHSAIFQ LQG PPG LRRIILTASGGAFRDWP  DL KVTVADAL HPNWDMGAKITVDSATMMNKGLEVIEAHYLFG  YDDID+V+HP+SIIHS++E QDTS+IGQLGWPDMRLP+LYS+SWPHR+ M+Y  LDL  L  +TFK PD  KYPCI LAYAAGR GG+MTAA+NAANERANEIFR+E I ++DI +V+E  ME+HK D    PS+EDI+ VD WAR +VDE A +L
Sbjct:   10 ASPVNTRETFQRTMDLALEETGAKKKIALLGSTGSIGTQTLDICREKPENFEVVSLAAGSNVDLLAKQIALFKPKMVSVATEDLVPALRERLSDMGVRGADLPTVTSGAEGIVATACHDDADTVVTGIVGCAGLLPTVEAIKRKKTIALANKETLIAGGPAVLPLLKEYGVDMVPADSEHSAIFQCLQGFPPGALRRIILTASGGAFRDWPAADLAKVTVADALTHPNWDMGAKITVDSATMMNKGLEVIEAHYLFGADYDDIDIVVHPESIIHSMVEAQDTSVIGQLGWPDMRLPLLYSLSWPHRVRMSYDKLDLAKLSKMTFKEPDRVKYPCIDLAYAAGREGGSMTAAMNAANERANEIFRKEVISFVDIPRVIEVVMEAHKADLMATPSIEDIVNVDLWARGKVDEAAAQL 424

The following BLAST results are available for this feature:

BLAST of NO17G02320.1 vs.

BLAST of NO17G02320.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
CBJ29720.1	4.900e-164	68.19	1-deoxy-D-xylulose 5-phosphate reductoisomerase, c...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO17G02320	NO17G02320	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO17G02320.1	NO17G02320.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO17G02320.1.cds1	NO17G02320.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO17G02320.1.cds2	NO17G02320.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO17G02320.1.cds3	NO17G02320.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO17G02320.1.cds4	NO17G02320.1.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO17G02320.1.cds5	NO17G02320.1.cds5	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO17G02320.1.cds6	NO17G02320.1.cds6	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO17G02320.1.cds7	NO17G02320.1.cds7	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO17G02320.1.cds8	NO17G02320.1.cds8	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO17G02320.1.cds9	NO17G02320.1.cds9	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO17G02320.1.cds10	NO17G02320.1.cds10	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO17G02320.1.cds11	NO17G02320.1.cds11	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr17:682710..686288-
coding sequence from alignment at chr17:682710..686288-

mRNA sequence

>NO17G02320.1 ID=NO17G02320.1|Name=NO17G02320.1|organism=Nannochloropsis oceanica|type=mRNA|length=1362bp
ATGCGTTCAGTAGCCGCCATGGGAGGCTTGATAGCCTTCCTGTCGGTGGG
CAGCGACGCTTTCAGCAGACCATCCCCCGTCACCATGTCCATTGGGCATG
CCGCACCCTCCAACACTGCCGAGTCTCTGCGGCAGACAGTGGACCTTGCC
CTCTCCCCGGAGAGCAAGAAGCGCAAAATCTCTCTGTTGGGGTCCACGGG
CTCTATCGGCACGCAGACCTTGGATATTGTCACGGAGCGCTCGGATATCT
ACGAGGTGACGGCCTTGGCTGCAGGCAACAACATCGACCTTCTGGCTCAG
CAAATTAAACAATTCCGTCCCGCCATTGCCAGTGTGCAGGACGAAAGCCG
TCTTCCAGCCCTCAAGGCTAAATTGACTGAATTAGGCGTACCTCCTTCCG
AGTGGCCCGAACTCGGGGCAGGACAAGACGGTGTAATTGCATGTGCCACA
GAGAAGGACGCGGATGTGGTAGTGACGGGCATCGTGGGATGCGCGGGTTT
GATACCCACGGTGGAAGCGATCAAGGCACGCAAGACCATCGCACTGGCCA
ACAAGGAGACGCTCATCAGCGGTGGGCCTGCCATTGTGCCCCTCCTCAAG
CAATACGGCGTAAACGTCATCCCGGCAGACAGCGAGCACAGCGCCATTTT
CCAGTCGTTGCAGGGCGTACCTCCGGGTGGCTTGAGGCGCATCATTTTGA
CGGCCTCGGGGGGAGCCTTCCGTGACTGGCCGGTGGAGGACCTGAAGAAG
GTGACGGTGGCAGATGCCCTAAAGCATCCGAATTGGGACATGGGCGCCAA
AATCACTGTGGATAGTGCCACGATGATGAACAAGGGGTTGGAGGTGATCG
AAGCTCATTACCTCTTCGGAACGGCCTATGACGACATTGATGTGGTCATT
CACCCCCAGTCCATTATCCACTCGCTCATCGAGACCCAGGACACGAGCAT
GATCGGCCAGCTCGGCTGGCCCGACATGCGCCTCCCCATCCTATACTCCA
TCTCGTGGCCGCATCGCATTCCTATGAATTATAAACCCTTAGATCTGGTG
GCCCTCGGCTCCCTGACATTCAAAGCACCGGACAACAAGAAGTATCCATG
CATTCAGCTTGCCTACGCCGCAGGACGGGCAGGAGGCACCATGACTGCGG
CCTTGAACGCGGCCAATGAGAGGGCAAATGAGATTTTTAGACAGGAAAAG
ATCGGATACCTCGACATTGCCAAGGTGGTGGAGGGCACGATGGAGAGCCA
CAAGAAGGATTGGAAGGAGATGCCCTCCCTCGAGGACATAATTGCAGTCG
ATGCTTGGGCCCGGGTTCGTGTGGATGAGCTTGCGGAGAAATTAAATTAC
GTGGCCGCGTAG

protein sequence of NO17G02320.1

>NO17G02320.1-protein ID=NO17G02320.1-protein|Name=NO17G02320.1|organism=Nannochloropsis oceanica|type=polypeptide|length=454bp
MRSVAAMGGLIAFLSVGSDAFSRPSPVTMSIGHAAPSNTAESLRQTVDLA
LSPESKKRKISLLGSTGSIGTQTLDIVTERSDIYEVTALAAGNNIDLLAQ
QIKQFRPAIASVQDESRLPALKAKLTELGVPPSEWPELGAGQDGVIACAT
EKDADVVVTGIVGCAGLIPTVEAIKARKTIALANKETLISGGPAIVPLLK
QYGVNVIPADSEHSAIFQSLQGVPPGGLRRIILTASGGAFRDWPVEDLKK
VTVADALKHPNWDMGAKITVDSATMMNKGLEVIEAHYLFGTAYDDIDVVI
HPQSIIHSLIETQDTSMIGQLGWPDMRLPILYSISWPHRIPMNYKPLDLV
ALGSLTFKAPDNKKYPCIQLAYAAGRAGGTMTAALNAANERANEIFRQEK
IGYLDIAKVVEGTMESHKKDWKEMPSLEDIIAVDAWARVRVDELAEKLNY
VAA*

mRNA from alignment at chr17:682710..686288-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO17G02320.1 ID=NO17G02320.1|Name=NO17G02320.1|organism=Nannochloropsis oceanica|type=mRNA|length=3579bp|location=Sequence derived from alignment at chr17:682710..686288- (Nannochloropsis oceanica)
ATGCGTTCAGTAGCCGCCATGGGAGGCTTGATAGCCTTCCTGTCGGTGGG
CAGCGACGCTTTCAGCAGACCATCCCCCGTCACCATGTCCATTGGGCATG
CCGCACCCTGTACGTACACAATGCCTGCTACTGTGATTGCTCGGACGCGG
CATGAAAGTGAGAGCTTTCTGCCACTGCTGTCGGACAGATCCTTTCGCGT
ACTTTTTCCCAACCCGCCGTGCCACTGTGCCTTACTGATCTCACACGTGC
ACATGAATCTGCATATACAAATGACACACGCCTAACCTTCAATTACCCCC
GCTTTTCCCCCCCCCTCTCGAACTTTCCAGCCAACACTGCCGAGTCTCTG
CGGCAGACAGTGGACCTTGCCCTCTCCCCGGAGAGCAAGAAGGTATGCAC
CTCCGTCCCTCCCTCCGTCCCTCCTTCCCTCCACTTTTCTTACTACACTT
TAATTGATAACATTCCCCCTGTTTCTTTGCCTACTCATCCGAAGCGAGAT
CTCTCTGTTGGGGTCCACGGCTTTTCAAGGGGGGGGGGGGCAGAAGCAGA
CACTCTCATTCCATCTTTGCTTTCCTCTCCACGGCTGTTCCTTATGCCTT
CTCTCTTTTTCCTTCTCTGTCCACAGCGCAAAATCTCTCTGTTGGGGTCC
ACGGGCTCTATCGGCACGCAGACCTTGGATATTGTCACGGAGCGCTCGGA
TATCTACGAGGTGACGGCCTTGGCTGCAGGTAGGGAGGGAGGGAGGGAGG
GATGGGGAGGGCAGATGGGGGAAGAAGATTACTGCCTTGACAGGGGGAGG
AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGGAGAGAGGGAGGGAGGGAG
GGAAGGAAGGAGCGAAGCGAATAAGAGAGAGAAGAGGAATTGAAGAGACA
GATAAAGCGTGTAGAGGAGCCAATCGATGAACCACTTCCCCTCCCTCCCT
CCCTCCCTCCCTCCCTTCCTTCCGTCCTCCCGTCTTCCTATCCTCCCTCC
CCATCAGGCAACAACATCGACCTTCTGGCTCAGCAAATTAAACAATTCCG
TCCCGCCATTGCCAGTGTGCAGGACGAAAGCCGTCTTCCAGCCCTCAAGG
CTAAATTGACTGAATTAGGCGTACCTCCTTCCGAGTGGCCCGAACTCGGG
GCAGGACAAGACGGTGTAATTGCATGTGCCACAGAGAAGGACGCGGATGT
GGTAGTGACGGGCATCGTGGGATGCGCGGGTTTGATACCCACGGTGGAAG
CGATCAAGGTACGTCTTCATTCCCTCCCTCCCTCCCCCCCGCCCTCTCCC
CAACGGTGGAAGCGATTTAGGTACGTCCCACTTCCCCTTCCTCCCTTCCT
TTCCTCCCTACCAACATCTCCTCTTCTGAGTGATACTTACTCGGCACATT
TTCATTCAGTACATCCTCGCCTGACCACCCCCGCTCCCTCCCTCCCCCCC
GCCCTCCAGGCACGCAAGACCATCGCACTGGCCAACAAGGAGACGCTCAT
CAGCGGTGGGCCTGCCATTGTGCCCCTCCTCAAGCAATACGGCGTAAACG
TCATCCCGGCAGACAGCGAGCACAGCGCCATTTTCCAGTCGTTGCAGGGC
GTACCTCCGGGTGGCTTGAGGCGCATCATTTTGACGGCCTCGGGGGGAGC
CTTCCGTGACTGGCCGGTGGAGGACCTGAAGAAGGTGAGGAGGGAAGGGA
GGGAGGGAGGGAGGGAGGGAGGGAAAGGGAGGGAAACAGCCGGATCCTCC
GTCACATATTCACCCCTCCTTCTCGACCTCACTATCTCCCACCTCTTCTC
ATCCTTTGAGTCGCGGTGGCGGATGCCCTGGAGCATACCCATTTCCCATT
CCCTCCCTCCCTCCCTCCCTCCCTCCCTCCTTCCTTCCTTCTTTCCTCCC
TCCTTACCAACAGGTGACGGTGGCAGATGCCCTAAAGCATCCGAATTGGG
ACATGGGCGCCAAAATCACTGTGGATAGGTGCGAGTCCTCCCTTCCTTCC
TCCCTCCCTCCCTCCCTTCCCCCCTCCCTCCCTCCCTCCCTCCTTCTTCC
TCTATCTTTCCTTTTTCCCTTCCTTCCCTCCTTCTCTTCTCTTTTGTCCC
TCCCTCCCTCCCTTCCTCCCTCCCTCCCTCCCTCAGCGCCACGATAATGA
ACAAGGTGTGAAGTTGCAACTGCTCCATTTACTCAATGACACTCGTCCTT
CCCTCCCTCCTTCCCCCCCTCCTTCCCTCCCTCCTTCCCTCCCTCCCTCC
CTGCCTCCCTCAGTGCCACGATGATGAACAAGGGGTTGGAGGTGATCGAA
GCTCATTACCTCTTCGGAACGGCCTATGACGACATTGATGTGGTGGGAAG
GGAGGAAGGGAAGGAGGGAAGGAAGGAGGGAGGGAGGGAGAGAGGGAGGG
AGAGAGGAAAGGGGGGAAGGAGGGTTCGAGGACGACAATGACTTTGACTA
TGTGGAGAAGGAAAGGGAGAAAGGGAGAGGTAATTGGACGCATACATCTG
CTCATTTCTCCTTCCTCCCTCCCTCCCTCCCTCCCTCCCTTCCTCCTTGT
AGGTCATTCACCCCCAGTCCATTATCCACTCGCTCATCGAGACCCAGGAC
ACGAGCATGATCGGCCAGCTCGGTACGGAGGGAGGGAGGGAGGGAGGAAA
GAGTGGTCGGGCGGTTGATCGAGAAACATCATTCTCACCCGAGGATGTGT
GATCTATACACATGCGTGATCCCTCCTTCCTTCCCACTATTCCTCCCTTT
CTCCCTTGCCTGACCCAACATGCGCCTTCCTATCCCTCCCTCCCTTCCTC
CCTCCCTTCCTCCCTCCCTCTCTCCCTCCCTCCCTCTCTCCCTCCAGGCT
GGCCCGACATGCGCCTCCCCATCCTATACTCCATCTCGTGGCCGCATCGC
ATTCCTATGAATTATAAACCCTTAGATCTGGTGGCCCTCGGCTCCCTGAC
ATTCAAGTAAGGACACCCTCCTTCCCTCCCTCCCTCCCTCCCTCCCTTCT
TTTCTTTCCTTTCTCCCTCCCGCCCTTCTTCCCTCGTTTCCCCCTCCCAT
TTATCTGACCCACTTCCTTCCTCTTCCCTCCCTTCCTCCCCCCCACTTCC
CTCACACACAGAGCACCGGACAACAAGAAGTATCCATGCATTCAGCTTGC
CTACGCCGCAGGACGGGCAGGAGGCACCATGACTGCGGCCTTGAACGCGG
CCAATGAGAGGGCAAATGAGATTTTTAGACAGGAAAAGATCGGATACCTC
GACATTGGTGAGGAGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAG
GATGGTTGCTATTAAGAAGAAGCGGGAAAGCCATGTCTCCTTTTCTTCTT
CATTCCTTCCCTTCTTTATGTTCTCCCTAGATACCATATTTTTACTGACA
GCTCACACACTACCTCCCTCCCTCCCTCCCTCCCAGCCAAGGTGGTGGAG
GGCACGATGGAGAGCCACAAGAAGGATTGGAAGGAGATGCCCTCCCTCGA
GGACATAATTGCAGTCGATGCTTGGGCCCGGGTTCGTGTGGATGAGCTTG
CGGAGAAATTAAATTACGTGGCCGCGTAG

Coding sequence (CDS) from alignment at chr17:682710..686288-

>NO17G02320.1 ID=NO17G02320.1|Name=NO17G02320.1|organism=Nannochloropsis oceanica|type=CDS|length=1362bp|location=Sequence derived from alignment at chr17:682710..686288- (Nannochloropsis oceanica)
ATGCGTTCAGTAGCCGCCATGGGAGGCTTGATAGCCTTCCTGTCGGTGGG
CAGCGACGCTTTCAGCAGACCATCCCCCGTCACCATGTCCATTGGGCATG
CCGCACCCTCCAACACTGCCGAGTCTCTGCGGCAGACAGTGGACCTTGCC
CTCTCCCCGGAGAGCAAGAAGCGCAAAATCTCTCTGTTGGGGTCCACGGG
CTCTATCGGCACGCAGACCTTGGATATTGTCACGGAGCGCTCGGATATCT
ACGAGGTGACGGCCTTGGCTGCAGGCAACAACATCGACCTTCTGGCTCAG
CAAATTAAACAATTCCGTCCCGCCATTGCCAGTGTGCAGGACGAAAGCCG
TCTTCCAGCCCTCAAGGCTAAATTGACTGAATTAGGCGTACCTCCTTCCG
AGTGGCCCGAACTCGGGGCAGGACAAGACGGTGTAATTGCATGTGCCACA
GAGAAGGACGCGGATGTGGTAGTGACGGGCATCGTGGGATGCGCGGGTTT
GATACCCACGGTGGAAGCGATCAAGGCACGCAAGACCATCGCACTGGCCA
ACAAGGAGACGCTCATCAGCGGTGGGCCTGCCATTGTGCCCCTCCTCAAG
CAATACGGCGTAAACGTCATCCCGGCAGACAGCGAGCACAGCGCCATTTT
CCAGTCGTTGCAGGGCGTACCTCCGGGTGGCTTGAGGCGCATCATTTTGA
CGGCCTCGGGGGGAGCCTTCCGTGACTGGCCGGTGGAGGACCTGAAGAAG
GTGACGGTGGCAGATGCCCTAAAGCATCCGAATTGGGACATGGGCGCCAA
AATCACTGTGGATAGTGCCACGATGATGAACAAGGGGTTGGAGGTGATCG
AAGCTCATTACCTCTTCGGAACGGCCTATGACGACATTGATGTGGTCATT
CACCCCCAGTCCATTATCCACTCGCTCATCGAGACCCAGGACACGAGCAT
GATCGGCCAGCTCGGCTGGCCCGACATGCGCCTCCCCATCCTATACTCCA
TCTCGTGGCCGCATCGCATTCCTATGAATTATAAACCCTTAGATCTGGTG
GCCCTCGGCTCCCTGACATTCAAAGCACCGGACAACAAGAAGTATCCATG
CATTCAGCTTGCCTACGCCGCAGGACGGGCAGGAGGCACCATGACTGCGG
CCTTGAACGCGGCCAATGAGAGGGCAAATGAGATTTTTAGACAGGAAAAG
ATCGGATACCTCGACATTGCCAAGGTGGTGGAGGGCACGATGGAGAGCCA
CAAGAAGGATTGGAAGGAGATGCCCTCCCTCGAGGACATAATTGCAGTCG
ATGCTTGGGCCCGGGTTCGTGTGGATGAGCTTGCGGAGAAATTAAATTAC
GTGGCCGCGTAG

Synonyms

Publications