NO17G02200.1, NO17G02200.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO17G02200.1
Unique Name	NO17G02200.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2996
Alignment location	chr17:637867..640959 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr17	genome	chr17:637867..640959 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO17G02200.1 vs.
Match: EWM24189.1 (septum site-determining protein [Nannochloropsis gaditana])

HSP 1 Score: 375.9 bits (964), Expect = 1.600e-100
Identity = 224/378 (59.26%), Postives = 267/378 (70.63%), Query Frame = 0

Query:   16 NPRAIRCSSSRTAATTATSPPQQAEAGKPHAHLRQYLDAWMGSTGTLNTTR-STTTGPVASHQHHHPHPSSAGHPITLTVAGKSYLVPTLRLPRGVGPLDLQAGLKATTSLSAGYFKCAPIVVDLGEWMTSQPLPRGGVRTEAAGKGGEVLDAVLLGEFVETLREAGLQPVGIANATATDIQAAAMALGLPCFMGRHGGNGINSSNSPGSAAAPANAAAPAAAMTPSTARPARKPTMAAAHLPS-TSPRSEAPKPSTSPTS---PNAATISSQPLSPPSPSAAP-ILPTKVIQGSVRTGQQVVAEGASLVILGHVNSGAEVSADGDIHIYGRLSGRALAGLGGDGKSKIFAGKFNAELVAIADVFTTCDFGEEMEEGR 388
            N RAIR  SS  +A +   PP  +E  KP  HLRQYLDAWMGSTGT++T R      P AS     P       PI +TVAGKSYLVPTLRLPRG+ P +L+AGL+ATTSLSAGYF+ AP+VVDLGEW+ SQPLPRGGVRT +AG GGEVLD  LL  FV  ++EAGL PVGIANATATD++AAA+ LGLPCFM RH      +  SP S  APA A+  A+A  P   R  ++ T A+A  P+ T+P S  P P  S ++   P+ +T+ + P + P  S  P  LP  V+QGSVRTGQQVVAEG SLV+LGHV+SGAEVSADGDIHIYG+L+GRALAGL GD ++ IF G+FNAELVAI +VFTTCD GE    GR
Sbjct:   23 NARAIRSQSSNVSAPSP--PPAPSEDEKPQVHLRQYLDAWMGSTGTVSTPRHQNQESPAASRDAQQPFSPPHAPPIAMTVAGKSYLVPTLRLPRGLSPSELKAGLRATTSLSAGYFQSAPMVVDLGEWLISQPLPRGGVRTASAGVGGEVLDGTLLATFVAAMKEAGLHPVGIANATATDVRAAALELGLPCFMARH------APPSP-STPAPALASVKASAPVPPQRRTEKEGTRASASRPAPTTPPSPPPSPPPSSSTRPPPSTSTVRASPTASPPLSPPPSSLPAMVVQGSVRTGQQVVAEGTSLVVLGHVHSGAEVSADGDIHIYGKLTGRALAGLSGDVRANIFVGRFNAELVAIGEVFTTCDVGEGGGRGR 391

The following BLAST results are available for this feature:

BLAST of NO17G02200.1 vs.

BLAST of NO17G02200.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM24189.1	1.600e-100	59.26	septum site-determining protein [Nannochloropsis g...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO17G02200	NO17G02200	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO17G02200.1	NO17G02200.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO17G02200.1.cds1	NO17G02200.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO17G02200.1.cds2	NO17G02200.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr17:637867..640959-
coding sequence from alignment at chr17:637867..640959-

mRNA sequence

>NO17G02200.1 ID=NO17G02200.1|Name=NO17G02200.1|organism=Nannochloropsis oceanica|type=mRNA|length=2996bp
GCTGCTGCTGCTGCTGCTGCTGCCGCTGTTGCTGTTGGCTGGTCCCATCC
GCTGGTAACGTTGCGGATGACACGAAGGCTGATGCTGGTTGCGATGGCAG
CTGTGCCCAAGCAGGGACAGGAGCAGTAGTAGCACCAGCAGCGACAGTGT
CAGCAGAAACAGAAGGCGAAAGATCAACCAGAGACTGCAGCGGCTGGGTG
GGAGGATGAGAACTTGTAAACACGGCATGTTCCGGGCTGAGGGAAGACGT
TTGGCTGGTGGCTGTTGCCGTGGTCGAGACCACGGATGCGGGGGGGCGGG
AGGATGAAGACGAGGAGGAAGGGAGGGAGGAGGAGGTTGACGGGGGCAAG
CATACTGGTAATGCTCCTTGCCCATCCAATGCCCCAATCGCTTCCAAATC
ATACAGAAATACATCCGACATGGCTCCTCCCCCACGATCCCGTAGCTGCT
GCTCCTGCAGCCGCTCCTCCTTCTTCTCCTTCATCTTTTTCTTCTCCTCC
CCTTCGTAGAGCATGTGGTCAAAATCCGAGTCCATATCAAAAATCTCGAG
GTCGTCCCCGAACAGGTTTACCAACGGTTCCTCTCCTTCACCACAATTAC
CGCCTGGCAAACCCGGTATAGGAATGACAGCTTTCTGCTCCCCATCCTGC
TGCTGCTGCTGGGCGTCACCCGTGGAGAGAGCCCTTGTGGTCTGCCTTTT
CCGTGGTCTTCCGCTGCTGCTGCCATCCCCGCCGATCCCTGCCCCACGGG
TGACACTGGATGATCGCTTTGCTCCCATACTTTGAGTAGTTGTACACTTG
TCGGCGTGTGTGGCGCTTGCTGTCTGTGCGTGTGATTGAAAAGAAACACA
CGACTTATCCAACGCCACCTGCCCTGTCCTAGCTAGCTGCGAGGCGTGCC
CTTGAGCTCCCCGTCAGCGTTGTCACCGGTGCATGATGTGCCTGATTGTC
TGTCCTGATATCGATACGAGACTCTTGAAGGCGGCAATGTGTCTTGCCTT
CGCCTCTGGGTTTCGTTTGACAATGGGTGTGTTCGGGAATAGTGAGATCA
AACATTAAGTCCAGGCTCGAGCATGGCAGCCAAGCCTAGCACTTGTTATC
ATTCTACTTCCGACTGTTGAAATGGTGGAGCAATTCCACATTTGTTTGCG
TGGAGTGGTAATGATGGGGTGGCTGAGAGAGGAGAAAAAACTTCCCGATG
ACGGCTTTGACTGATCGATGAAAGGCTCAAGTTGGAGTAACCCTGACTCT
CACATGCCGCTGGTCAGTCCTCATAAGCCAACACGACAAAGGACACAGTC
CACAACCGCCTCATCGCAGCGCTTGTCCTCATGCCAATGTCAATGCGAGA
AGGTGCCTGGTGCGGATGAGGCTGGTGTGGGTTATGCGCAGGTCCTTCGC
ATTTAACAGACCTGGCCATCCTCGCCAACTCGGCGTCGTGGATGGATCAT
CGCTCAAAAGTCTGGCCCTTCAGCATTCCCCCAAATTCCCTATCTCCATC
TCACAATCCCCACACACCATTGTCTCTCCACAAGGAAGATTTGCATCCTC
GTTCAGCACCCCAACAGCAATAGGATGCGGGCACGACTTGCCGTCACGTC
TGCCTCTACGATTCTTTCCAACCCCCGCGCAATCCGTTGTAGCAGCAGCA
GAACAGCAGCAACCACAGCTACGTCCCCTCCGCAACAAGCCGAGGCCGGC
AAGCCTCACGCGCACCTACGACAATATTTGGATGCCTGGATGGGCAGCAC
GGGCACGCTCAACACCACCCGTAGCACCACCACTGGCCCCGTCGCGTCCC
ACCAGCATCACCATCCCCACCCTTCTTCCGCCGGCCACCCCATCACTCTT
ACTGTGGCCGGCAAATCCTATCTGGTGCCTACATTGCGCTTGCCTCGCGG
TGTGGGCCCCCTGGACCTTCAAGCCGGTCTAAAAGCCACCACTAGTTTGA
GCGCTGGTTACTTTAAATGTGCCCCTATTGTGGTCGACCTAGGCGAATGG
ATGACTTCGCAGCCCTTACCACGGGGAGGGGTTCGGACAGAAGCGGCGGG
AAAGGGAGGCGAGGTGTTAGACGCGGTCTTGTTAGGGGAATTTGTGGAGA
CCTTGAGGGAGGCAGGATTGCAACCCGTGGGGATCGCGAATGCCACAGCG
ACAGATATCCAAGCTGCAGCGATGGCTTTGGGTTTGCCGTGTTTTATGGG
AAGGCATGGTGGTAATGGTATTAATAGTAGTAATTCACCAGGTTCTGCTG
CTGCTCCTGCTAATGCTGCTGCTCCTGCTGCTGCGATGACACCGTCGACT
GCAAGACCAGCGCGAAAGCCCACCATGGCCGCCGCGCATCTTCCCTCCAC
GTCCCCACGGTCAGAAGCGCCAAAACCATCAACTTCCCCGACTTCGCCGA
ACGCAGCCACTATCTCCTCCCAGCCTTTGTCTCCACCCTCCCCCTCCGCT
GCCCCGATACTCCCAACAAAGGTAATCCAAGGCAGTGTCCGTACTGGACA
GCAAGTAGTGGCCGAAGGTGCTTCTCTCGTCATTCTGGGACATGTTAATT
CCGGTGCAGAGGTGTCTGCGGATGGTGATATACACATTTATGGACGACTG
TCTGGTAGGGCTCTGGCGGGGTTAGGGGGGGATGGGAAGAGTAAGATTTT
TGCGGGAAAGTTCAATGCGGAGCTGGTAGCGATTGCCGATGTATTCACGA
CATGCGATTTCGGGGAGGAGATGGAGGAGGGGAGGGAGGGGGTTGTTTTG
GGTGCGCCGACGAGCGTGAGTTTGAATGAGCGGGGAGGGAGCTTGGTGTT
CCATTCGTTTAAGGTCTAGGAAGGGAGTGACGGACAGAAGGGATAACGAG
AAAGGAGGAGGAGGATTGAAGAGCGTTTGTTCAGGCGCAGAAATGCCGAG
TCAAAAAGACACACTGAAAGGAGGGAGTAGGCGCAAAAAAAGATAAAAAC
AGTGTAATAGCACATCGACTGACCAGAACGACTTTTCAACCGAGGG

protein sequence of NO17G02200.1

>NO17G02200.1-protein ID=NO17G02200.1-protein|Name=NO17G02200.1|organism=Nannochloropsis oceanica|type=polypeptide|length=415bp
MRARLAVTSASTILSNPRAIRCSSSRTAATTATSPPQQAEAGKPHAHLRQ
YLDAWMGSTGTLNTTRSTTTGPVASHQHHHPHPSSAGHPITLTVAGKSYL
VPTLRLPRGVGPLDLQAGLKATTSLSAGYFKCAPIVVDLGEWMTSQPLPR
GGVRTEAAGKGGEVLDAVLLGEFVETLREAGLQPVGIANATATDIQAAAM
ALGLPCFMGRHGGNGINSSNSPGSAAAPANAAAPAAAMTPSTARPARKPT
MAAAHLPSTSPRSEAPKPSTSPTSPNAATISSQPLSPPSPSAAPILPTKV
IQGSVRTGQQVVAEGASLVILGHVNSGAEVSADGDIHIYGRLSGRALAGL
GGDGKSKIFAGKFNAELVAIADVFTTCDFGEEMEEGREGVVLGAPTSVSL
NERGGSLVFHSFKV*

mRNA from alignment at chr17:637867..640959-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO17G02200.1 ID=NO17G02200.1|Name=NO17G02200.1|organism=Nannochloropsis oceanica|type=mRNA|length=3093bp|location=Sequence derived from alignment at chr17:637867..640959- (Nannochloropsis oceanica)
GCTGCTGCTGCTGCTGCTGCTGCCGCTGTTGCTGTTGGCTGGTCCCATCC
GCTGGTAACGTTGCGGATGACACGAAGGCTGATGCTGGTTGCGATGGCAG
CTGTGCCCAAGCAGGGACAGGAGCAGTAGTAGCACCAGCAGCGACAGTGT
CAGCAGAAACAGAAGGCGAAAGATCAACCAGAGACTGCAGCGGCTGGGTG
GGAGGATGAGAACTTGTAAACACGGCATGTTCCGGGCTGAGGGAAGACGT
TTGGCTGGTGGCTGTTGCCGTGGTCGAGACCACGGATGCGGGGGGGCGGG
AGGATGAAGACGAGGAGGAAGGGAGGGAGGAGGAGGTTGACGGGGGCAAG
CATACTGGTAATGCTCCTTGCCCATCCAATGCCCCAATCGCTTCCAAATC
ATACAGAAATACATCCGACATGGCTCCTCCCCCACGATCCCGTAGCTGCT
GCTCCTGCAGCCGCTCCTCCTTCTTCTCCTTCATCTTTTTCTTCTCCTCC
CCTTCGTAGAGCATGTGGTCAAAATCCGAGTCCATATCAAAAATCTCGAG
GTCGTCCCCGAACAGGTTTACCAACGGTTCCTCTCCTTCACCACAATTAC
CGCCTGGCAAACCCGGTATAGGAATGACAGCTTTCTGCTCCCCATCCTGC
TGCTGCTGCTGGGCGTCACCCGTGGAGAGAGCCCTTGTGGTCTGCCTTTT
CCGTGGTCTTCCGCTGCTGCTGCCATCCCCGCCGATCCCTGCCCCACGGG
TGACACTGGATGATCGCTTTGCTCCCATACTTTGAGTAGTTGTACACTTG
TCGGCGTGTGTGGCGCTTGCTGTCTGTGCGTGTGATTGAAAAGAAACACA
CGACTTATCCAACGCCACCTGCCCTGTCCTAGCTAGCTGCGAGGCGTGCC
CTTGAGCTCCCCGTCAGCGTTGTCACCGGTGCATGATGTGCCTGATTGTC
TGTCCTGATATCGATACGAGACTCTTGAAGGCGGCAATGTGTCTTGCCTT
CGCCTCTGGGTTTCGTTTGACAATGGGTGTGTTCGGGAATAGTGAGATCA
AACATTAAGTCCAGGCTCGAGCATGGCAGCCAAGCCTAGCACTTGTTATC
ATTCTACTTCCGACTGTTGAAATGGTGGAGCAATTCCACATTTGTTTGCG
TGGAGTGGTAATGATGGGGTGGCTGAGAGAGGAGAAAAAACTTCCCGATG
ACGGCTTTGACTGATCGATGAAAGGCTCAAGTTGGAGTAACCCTGACTCT
CACATGCCGCTGGTCAGTCCTCATAAGCCAACACGACAAAGGACACAGTC
CACAACCGCCTCATCGCAGCGCTTGTCCTCATGCCAATGTCAATGCGAGA
AGGTGCCTGGTGCGGATGAGGCTGGTGTGGGTTATGCGCAGGTCCTTCGC
ATTTAACAGACCTGGCCATCCTCGCCAACTCGGCGTCGTGGATGGATCAT
CGCTCAAAAGTCTGGCCCTTCAGCATTCCCCCAAATTCCCTATCTCCATC
TCACAATCCCCACACACCATTGTCTCTCCACAAGGAAGATTTGCATCCTC
GTTCAGCACCCCAACAGCAATAGGATGCGGGCACGACTTGCCGTCACGTC
TGCCTCTACGATTCTTTCCAACCCCCGCGCAATCCGTTGTAGCAGCAGCA
GAACAGCAGCAACCACAGCTACGTCCCCTCCGCAACAAGCCGAGGCCGGC
AAGCCTCACGCGCACCTACGACAATATTTGGATGCCTGGATGGGCAGCAC
GGGCACGCTCAACACCACCCGTAGCACCACCACTGGCCCCGTCGCGTCCC
ACCAGCATCACCATCCCCACCCTTCTTCCGCCGGCCACCCCATCACTCTT
ACTGTGGCCGGCAAATCCTATCTGGTGCCTACATTGCGCTTGCCTCGCGG
TGTGGGCCCCCTGGACCTTCAAGCCGGTCTAAAAGCCACCACTAGTTTGA
GCGCTGGTTACTTTAAATGTGCCCCTATTGTGGTCGACCTAGGCGAATGG
ATGACTTCGCAGCCCTTACCACGGGGAGGGGTTCGGACAGAAGCGGCGGG
AAAGGGAGGCGAGGTGTTAGACGCGGTCTTGTTAGGGGAATTTGTGGAGA
CCTTGAGGGAGGCAGGATTGCAACCCGTGGGGATCGCGAATGCCACAGCG
ACAGATATCCAAGCTGCAGCGATGGCTTTGGGTTTGCCGTGTTTTATGGG
AAGGCATGGTGGTAATGGTATTAATAGTAGTAATTCACCAGGTTCTGCTG
CTGCTCCTGCTAATGCTGCTGCTCCTGCTGCTGCGATGACACCGTCGACT
GCAAGACCAGCGCGAAAGCCCACCATGGCCGCCGCGCATCTTCCCTCCAC
GTCCCCACGGTCAGAAGCGCCAAAACCATCAACTTCCCCGACTTCGCCGA
ACGCAGCCACTATCTCCTCCCAGCCTTTGTCTCCACCCTCCCCCTCCGCT
GCCCCGATACTCCCAACAAAGGTAAAAATGCGCAATAGGCAGCTTAAGCG
ACTCTCCCGTCATCTGCATGAGACCATTTACCAGTCCTCTCTCTCCCCCT
CCTTCCATTCCCTCCCAGGTAATCCAAGGCAGTGTCCGTACTGGACAGCA
AGTAGTGGCCGAAGGTGCTTCTCTCGTCATTCTGGGACATGTTAATTCCG
GTGCAGAGGTGTCTGCGGATGGTGATATACACATTTATGGACGACTGTCT
GGTAGGGCTCTGGCGGGGTTAGGGGGGGATGGGAAGAGTAAGATTTTTGC
GGGAAAGTTCAATGCGGAGCTGGTAGCGATTGCCGATGTATTCACGACAT
GCGATTTCGGGGAGGAGATGGAGGAGGGGAGGGAGGGGGTTGTTTTGGGT
GCGCCGACGAGCGTGAGTTTGAATGAGCGGGGAGGGAGCTTGGTGTTCCA
TTCGTTTAAGGTCTAGGAAGGGAGTGACGGACAGAAGGGATAACGAGAAA
GGAGGAGGAGGATTGAAGAGCGTTTGTTCAGGCGCAGAAATGCCGAGTCA
AAAAGACACACTGAAAGGAGGGAGTAGGCGCAAAAAAAGATAAAAACAGT
GTAATAGCACATCGACTGACCAGAACGACTTTTCAACCGAGGG

Coding sequence (CDS) from alignment at chr17:637867..640959-

>NO17G02200.1 ID=NO17G02200.1|Name=NO17G02200.1|organism=Nannochloropsis oceanica|type=CDS|length=1245bp|location=Sequence derived from alignment at chr17:637867..640959- (Nannochloropsis oceanica)
ATGCGGGCACGACTTGCCGTCACGTCTGCCTCTACGATTCTTTCCAACCC
CCGCGCAATCCGTTGTAGCAGCAGCAGAACAGCAGCAACCACAGCTACGT
CCCCTCCGCAACAAGCCGAGGCCGGCAAGCCTCACGCGCACCTACGACAA
TATTTGGATGCCTGGATGGGCAGCACGGGCACGCTCAACACCACCCGTAG
CACCACCACTGGCCCCGTCGCGTCCCACCAGCATCACCATCCCCACCCTT
CTTCCGCCGGCCACCCCATCACTCTTACTGTGGCCGGCAAATCCTATCTG
GTGCCTACATTGCGCTTGCCTCGCGGTGTGGGCCCCCTGGACCTTCAAGC
CGGTCTAAAAGCCACCACTAGTTTGAGCGCTGGTTACTTTAAATGTGCCC
CTATTGTGGTCGACCTAGGCGAATGGATGACTTCGCAGCCCTTACCACGG
GGAGGGGTTCGGACAGAAGCGGCGGGAAAGGGAGGCGAGGTGTTAGACGC
GGTCTTGTTAGGGGAATTTGTGGAGACCTTGAGGGAGGCAGGATTGCAAC
CCGTGGGGATCGCGAATGCCACAGCGACAGATATCCAAGCTGCAGCGATG
GCTTTGGGTTTGCCGTGTTTTATGGGAAGGCATGGTGGTAATGGTATTAA
TAGTAGTAATTCACCAGGTTCTGCTGCTGCTCCTGCTAATGCTGCTGCTC
CTGCTGCTGCGATGACACCGTCGACTGCAAGACCAGCGCGAAAGCCCACC
ATGGCCGCCGCGCATCTTCCCTCCACGTCCCCACGGTCAGAAGCGCCAAA
ACCATCAACTTCCCCGACTTCGCCGAACGCAGCCACTATCTCCTCCCAGC
CTTTGTCTCCACCCTCCCCCTCCGCTGCCCCGATACTCCCAACAAAGGTA
ATCCAAGGCAGTGTCCGTACTGGACAGCAAGTAGTGGCCGAAGGTGCTTC
TCTCGTCATTCTGGGACATGTTAATTCCGGTGCAGAGGTGTCTGCGGATG
GTGATATACACATTTATGGACGACTGTCTGGTAGGGCTCTGGCGGGGTTA
GGGGGGGATGGGAAGAGTAAGATTTTTGCGGGAAAGTTCAATGCGGAGCT
GGTAGCGATTGCCGATGTATTCACGACATGCGATTTCGGGGAGGAGATGG
AGGAGGGGAGGGAGGGGGTTGTTTTGGGTGCGCCGACGAGCGTGAGTTTG
AATGAGCGGGGAGGGAGCTTGGTGTTCCATTCGTTTAAGGTCTAG

Synonyms

Publications