NO17G02010.1, NO17G02010.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO17G02010.1
Unique NameNO17G02010.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1497
Alignment locationchr17:580461..582183 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr17genomechr17:580461..582183 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO17G02010.1 vs.
Match: EWM24209.1 (elmo domain-containing protein a [Nannochloropsis gaditana])

HSP 1 Score: 506.9 bits (1304), Expect = 7.100e-140
Identity = 271/455 (59.56%), Postives = 319/455 (70.11%), Query Frame = 0 
Query:   41 PILVTYEIIGPADAAETGLTSSFELLGYNTSSNFSREVPTVQALREAFPYLGKFHFRAKIPLPLSTPSQYAWLDLADDDAPLPVWVERNAQQCVEIRALPLVLPEAPGEDEEEDGGELDFSGPDLDQDIVEASTCGGGEGGWEKGYGYEARARSRQMEEQGRQSSSLSSSSHPSSSWSRQLKDAGESVLTSDVARDLTKKGLKVGKQVGKQVDKLWRLVGEGLAGGGGGGGGEGREEGEYPSSPHGPSAGAVRYLRKWEEALVTPPDAELLSTLGAALFPPGEGGREGGPGGKINWRRAGCEGEEPIRDLRGTGSMCAKCLIYTARTYPRKIQQILSRGEEDEEEGREGGHAYPLVGVANSLTLMLADIFKLRDGRYVHVQNVFWPLFEGGGYGTIEEVFSAALGYLDRRWVETEAGIEGFPRLVQHVRRGLEGVLGQAPVSLPHFQAMAEEAGL 496
            P+LV YE IGPADA ETG +SSFEL     +S+   +V TV ALREAFPY+G FHFRAKIP      +QYAWLDL ++D PLP+  E + Q  V IR LPL   +   + + ++GGELDFSGPDLDQDIVE  +C  GEGG  +G G +A      +   G + +S SS      +W+ QLK  GESV+TSDVARDLTKKGLKVGKQVGKQV+KLWRLVGEGL GG  G GG G         P GPS  +VRYLR+WE+ALVTPPDAE L  L  ALFP      EG       WRRAGCE E+P+R+ RGTGSMC +CL Y ARTYP K Q IL R E  ++EG      YPL+GV+NSL L++ DIFKLRD RYVHVQ+  W LFEGGGYGT+EEVFSAAL YLDRRW+ETEA IEGF  L +  RR LEGVLGQ P++LPHFQA+A++AGL
Sbjct:    4 PVLVAYEFIGPADAPETGFSSSFELF----ASDSPTDVLTVLALREAFPYVGDFHFRAKIPF---QETQYAWLDLTEEDTPLPLLTEESDQPVVAIRVLPLAFEDEDEDRQGKNGGELDFSGPDLDQDIVE--SCVLGEGGGSRGGGGDA------LGVGGGRDASFSSPGGSYGNWAHQLKGVGESVITSDVARDLTKKGLKVGKQVGKQVNKLWRLVGEGLGGGERGEGGAGDRREGRSLVPEGPSPSSVRYLRRWEDALVTPPDAETLLALWKALFPGAASRDEGARARSRQWRRAGCEEEDPLREFRGTGSMCVRCLTYFARTYPEKTQDILERYEAGKKEGCGNQEMYPLIGVSNSLILIMVDIFKLRDARYVHVQSTMWNLFEGGGYGTMEEVFSAALAYLDRRWMETEASIEGFSTLARETRRALEGVLGQGPLNLPHFQALAQDAGL 443
The following BLAST results are available for this feature:
BLAST of NO17G02010.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24209.17.100e-14059.56elmo domain-containing protein a [Nannochloropsis ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO17G02010NO17G02010Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO17G02010.1NO17G02010.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO17G02010.1.cds1NO17G02010.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO17G02010.1.cds2NO17G02010.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO17G02010.1 ID=NO17G02010.1|Name=NO17G02010.1|organism=Nannochloropsis oceanica|type=mRNA|length=1497bp
ATGAAGTGGAGGCAAGAGCAACTTGACGTCGAAGCGTACCAAGGCCTGTC
GCCGCTATCGTCCAAGCGTCACCCCCATAAACGTTACCCGCTTTTTCTTC
TCACAAACCAACATGCCCCCCCCATCCTCGTCACCTACGAAATCATTGGG
CCCGCCGATGCGGCCGAAACCGGGTTGACATCCTCCTTTGAACTCCTGGG
CTATAACACAAGCAGCAACTTCTCAAGAGAAGTCCCGACCGTCCAAGCCC
TGCGCGAAGCCTTCCCCTACCTGGGCAAATTCCATTTTCGAGCGAAAATT
CCCCTTCCCTTATCCACACCGTCACAATATGCGTGGTTAGACCTAGCCGA
CGACGACGCTCCCTTGCCTGTATGGGTGGAGAGGAATGCACAGCAATGCG
TGGAAATACGGGCACTGCCATTGGTCTTGCCAGAGGCGCCAGGAGAGGAC
GAGGAGGAAGATGGGGGGGAGCTAGACTTTAGTGGACCTGATCTGGATCA
AGATATTGTAGAGGCGTCAACGTGTGGAGGTGGAGAAGGGGGATGGGAGA
AAGGATATGGGTATGAAGCACGAGCCCGCTCTCGTCAGATGGAAGAACAA
GGACGGCAATCCTCCTCCTTATCGTCATCCTCCCACCCCTCCAGCAGCTG
GTCTAGACAGCTCAAAGACGCGGGTGAGTCTGTCCTGACCTCAGACGTCG
CCCGGGACCTGACCAAAAAGGGCCTGAAAGTAGGGAAGCAAGTCGGGAAA
CAAGTGGATAAACTGTGGAGGCTCGTAGGGGAAGGACTCGCTGGAGGAGG
AGGGGGAGGGGGAGGAGAAGGACGAGAAGAAGGAGAATACCCCTCCTCCC
CCCATGGGCCAAGTGCGGGTGCGGTTCGGTACTTGAGGAAATGGGAGGAG
GCACTGGTGACCCCGCCAGACGCAGAATTGCTTTCGACGCTTGGGGCGGC
CTTGTTTCCTCCCGGGGAAGGGGGGAGGGAGGGAGGACCGGGAGGTAAGA
TAAATTGGAGAAGGGCGGGTTGTGAGGGAGAGGAGCCCATCAGGGATTTA
CGTGGGACGGGGAGTATGTGCGCGAAGTGTTTGATTTATACCGCGAGGAC
CTACCCGAGAAAAATCCAGCAAATTTTGAGTAGGGGGGAGGAAGACGAGG
AAGAAGGGAGGGAGGGAGGGCACGCGTACCCTCTGGTGGGGGTTGCGAAT
AGTCTGACGTTGATGTTGGCAGATATTTTTAAGTTGAGGGATGGGAGATA
TGTGCATGTGCAAAACGTGTTCTGGCCTTTGTTTGAAGGGGGGGGATACG
GAACGATAGAGGAGGTGTTCAGTGCGGCCCTTGGGTACCTGGACCGGAGG
TGGGTGGAGACGGAAGCGGGGATAGAGGGGTTTCCACGGCTGGTGCAGCA
TGTGAGGAGGGGGTTGGAGGGAGTTCTAGGGCAGGCTCCAGTGAGCTTAC
CTCACTTTCAAGCCATGGCGGAGGAAGCAGGACTGTACATGGAGTGA
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protein sequence of NO17G02010.1

>NO17G02010.1-protein ID=NO17G02010.1-protein|Name=NO17G02010.1|organism=Nannochloropsis oceanica|type=polypeptide|length=499bp
MKWRQEQLDVEAYQGLSPLSSKRHPHKRYPLFLLTNQHAPPILVTYEIIG
PADAAETGLTSSFELLGYNTSSNFSREVPTVQALREAFPYLGKFHFRAKI
PLPLSTPSQYAWLDLADDDAPLPVWVERNAQQCVEIRALPLVLPEAPGED
EEEDGGELDFSGPDLDQDIVEASTCGGGEGGWEKGYGYEARARSRQMEEQ
GRQSSSLSSSSHPSSSWSRQLKDAGESVLTSDVARDLTKKGLKVGKQVGK
QVDKLWRLVGEGLAGGGGGGGGEGREEGEYPSSPHGPSAGAVRYLRKWEE
ALVTPPDAELLSTLGAALFPPGEGGREGGPGGKINWRRAGCEGEEPIRDL
RGTGSMCAKCLIYTARTYPRKIQQILSRGEEDEEEGREGGHAYPLVGVAN
SLTLMLADIFKLRDGRYVHVQNVFWPLFEGGGYGTIEEVFSAALGYLDRR
WVETEAGIEGFPRLVQHVRRGLEGVLGQAPVSLPHFQAMAEEAGLYME*
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mRNA from alignment at chr17:580461..582183+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO17G02010.1 ID=NO17G02010.1|Name=NO17G02010.1|organism=Nannochloropsis oceanica|type=mRNA|length=1723bp|location=Sequence derived from alignment at chr17:580461..582183+ (Nannochloropsis oceanica)
ATGAAGTGGAGGCAAGAGCAACTTGACGTCGTTGCAACTAGGATGATGCC
GAGAATGATGGCTGAGGAACTCACACACTGCCTTCCCTACGCCCCTATTT
TTTCATTTTACACATCCATTAGCGCAGGTTTTCCAGAGGCTCTCGTGCAG
AGAGACCGCTATTTGCCGCATCCGGAGTCTATTCTCTCAAGCAGCATCAC
CATTCCTTTCTCCCCGCTACGCCCTAGACTAGACGCCACTCCATATAACG
TGAAAGGAAGCGTACCAAGGCCTGTCGCCGCTATCGTCCAAGCGTCACCC
CCATAAACGTTACCCGCTTTTTCTTCTCACAAACCAACATGCCCCCCCCA
TCCTCGTCACCTACGAAATCATTGGGCCCGCCGATGCGGCCGAAACCGGG
TTGACATCCTCCTTTGAACTCCTGGGCTATAACACAAGCAGCAACTTCTC
AAGAGAAGTCCCGACCGTCCAAGCCCTGCGCGAAGCCTTCCCCTACCTGG
GCAAATTCCATTTTCGAGCGAAAATTCCCCTTCCCTTATCCACACCGTCA
CAATATGCGTGGTTAGACCTAGCCGACGACGACGCTCCCTTGCCTGTATG
GGTGGAGAGGAATGCACAGCAATGCGTGGAAATACGGGCACTGCCATTGG
TCTTGCCAGAGGCGCCAGGAGAGGACGAGGAGGAAGATGGGGGGGAGCTA
GACTTTAGTGGACCTGATCTGGATCAAGATATTGTAGAGGCGTCAACGTG
TGGAGGTGGAGAAGGGGGATGGGAGAAAGGATATGGGTATGAAGCACGAG
CCCGCTCTCGTCAGATGGAAGAACAAGGACGGCAATCCTCCTCCTTATCG
TCATCCTCCCACCCCTCCAGCAGCTGGTCTAGACAGCTCAAAGACGCGGG
TGAGTCTGTCCTGACCTCAGACGTCGCCCGGGACCTGACCAAAAAGGGCC
TGAAAGTAGGGAAGCAAGTCGGGAAACAAGTGGATAAACTGTGGAGGCTC
GTAGGGGAAGGACTCGCTGGAGGAGGAGGGGGAGGGGGAGGAGAAGGACG
AGAAGAAGGAGAATACCCCTCCTCCCCCCATGGGCCAAGTGCGGGTGCGG
TTCGGTACTTGAGGAAATGGGAGGAGGCACTGGTGACCCCGCCAGACGCA
GAATTGCTTTCGACGCTTGGGGCGGCCTTGTTTCCTCCCGGGGAAGGGGG
GAGGGAGGGAGGACCGGGAGGTAAGATAAATTGGAGAAGGGCGGGTTGTG
AGGGAGAGGAGCCCATCAGGGATTTACGTGGGACGGGGAGTATGTGCGCG
AAGTGTTTGATTTATACCGCGAGGACCTACCCGAGAAAAATCCAGCAAAT
TTTGAGTAGGGGGGAGGAAGACGAGGAAGAAGGGAGGGAGGGAGGGCACG
CGTACCCTCTGGTGGGGGTTGCGAATAGTCTGACGTTGATGTTGGCAGAT
ATTTTTAAGTTGAGGGATGGGAGATATGTGCATGTGCAAAACGTGTTCTG
GCCTTTGTTTGAAGGGGGGGGATACGGAACGATAGAGGAGGTGTTCAGTG
CGGCCCTTGGGTACCTGGACCGGAGGTGGGTGGAGACGGAAGCGGGGATA
GAGGGGTTTCCACGGCTGGTGCAGCATGTGAGGAGGGGGTTGGAGGGAGT
TCTAGGGCAGGCTCCAGTGAGCTTACCTCACTTTCAAGCCATGGCGGAGG
AAGCAGGACTGTACATGGAGTGA
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Coding sequence (CDS) from alignment at chr17:580461..582183+

>NO17G02010.1 ID=NO17G02010.1|Name=NO17G02010.1|organism=Nannochloropsis oceanica|type=CDS|length=1497bp|location=Sequence derived from alignment at chr17:580461..582183+ (Nannochloropsis oceanica)
ATGAAGTGGAGGCAAGAGCAACTTGACGTCGAAGCGTACCAAGGCCTGTC
GCCGCTATCGTCCAAGCGTCACCCCCATAAACGTTACCCGCTTTTTCTTC
TCACAAACCAACATGCCCCCCCCATCCTCGTCACCTACGAAATCATTGGG
CCCGCCGATGCGGCCGAAACCGGGTTGACATCCTCCTTTGAACTCCTGGG
CTATAACACAAGCAGCAACTTCTCAAGAGAAGTCCCGACCGTCCAAGCCC
TGCGCGAAGCCTTCCCCTACCTGGGCAAATTCCATTTTCGAGCGAAAATT
CCCCTTCCCTTATCCACACCGTCACAATATGCGTGGTTAGACCTAGCCGA
CGACGACGCTCCCTTGCCTGTATGGGTGGAGAGGAATGCACAGCAATGCG
TGGAAATACGGGCACTGCCATTGGTCTTGCCAGAGGCGCCAGGAGAGGAC
GAGGAGGAAGATGGGGGGGAGCTAGACTTTAGTGGACCTGATCTGGATCA
AGATATTGTAGAGGCGTCAACGTGTGGAGGTGGAGAAGGGGGATGGGAGA
AAGGATATGGGTATGAAGCACGAGCCCGCTCTCGTCAGATGGAAGAACAA
GGACGGCAATCCTCCTCCTTATCGTCATCCTCCCACCCCTCCAGCAGCTG
GTCTAGACAGCTCAAAGACGCGGGTGAGTCTGTCCTGACCTCAGACGTCG
CCCGGGACCTGACCAAAAAGGGCCTGAAAGTAGGGAAGCAAGTCGGGAAA
CAAGTGGATAAACTGTGGAGGCTCGTAGGGGAAGGACTCGCTGGAGGAGG
AGGGGGAGGGGGAGGAGAAGGACGAGAAGAAGGAGAATACCCCTCCTCCC
CCCATGGGCCAAGTGCGGGTGCGGTTCGGTACTTGAGGAAATGGGAGGAG
GCACTGGTGACCCCGCCAGACGCAGAATTGCTTTCGACGCTTGGGGCGGC
CTTGTTTCCTCCCGGGGAAGGGGGGAGGGAGGGAGGACCGGGAGGTAAGA
TAAATTGGAGAAGGGCGGGTTGTGAGGGAGAGGAGCCCATCAGGGATTTA
CGTGGGACGGGGAGTATGTGCGCGAAGTGTTTGATTTATACCGCGAGGAC
CTACCCGAGAAAAATCCAGCAAATTTTGAGTAGGGGGGAGGAAGACGAGG
AAGAAGGGAGGGAGGGAGGGCACGCGTACCCTCTGGTGGGGGTTGCGAAT
AGTCTGACGTTGATGTTGGCAGATATTTTTAAGTTGAGGGATGGGAGATA
TGTGCATGTGCAAAACGTGTTCTGGCCTTTGTTTGAAGGGGGGGGATACG
GAACGATAGAGGAGGTGTTCAGTGCGGCCCTTGGGTACCTGGACCGGAGG
TGGGTGGAGACGGAAGCGGGGATAGAGGGGTTTCCACGGCTGGTGCAGCA
TGTGAGGAGGGGGTTGGAGGGAGTTCTAGGGCAGGCTCCAGTGAGCTTAC
CTCACTTTCAAGCCATGGCGGAGGAAGCAGGACTGTACATGGAGTGA
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Synonyms
Publications