NO17G01960.1, NO17G01960.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO17G01960.1
Unique NameNO17G01960.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1410
Alignment locationchr17:559362..561114 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr17genomechr17:559362..561114 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO17G01960.1 vs.
Match: EWM24239.1 (set1 ash2 histone methyltransferase complex subunit ash2 [Nannochloropsis gaditana])

HSP 1 Score: 267.3 bits (682), Expect = 8.900e-68
Identity = 164/293 (55.97%), Postives = 201/293 (68.60%), Query Frame = 0 
Query:    1 MSKRSAPVESSSSASISSTSSSTSASSAAAASSPSPITATNASTSAVSVAVKRTRGAIAAAATAAAAST--RSLPLLEIPKQVTFSVKETAPQLSLSRDLLEVTGCRAGYRMSKASDSVYAGNWYWECEILETLPTTTPTA--DSHNEDYIGAAVEDQPHFRVGWATKQGNIQAPVGYDKHSFGYRDVRGSKIHKSERVDHYGEAYGPGDIIGCMICLPVLPEHMQETSLNGSSNPLLQGGVFPHPFLNREDSYNSASGSVATSASGGVGCVGGAVGGGGSSY--SNGSNGNG 288
            MSKRS+  ++ S + +  TS++    S   AS    ++ ++A +       KRTR  +A AA  A+A    ++LPL+E+PK VTFS+KE+APQL LSRDL+EVTGCRAGYRM+K SD VY+GNWYWECEILE   T T     D  +E+    A ED PHFRVGWATKQGN+QAPVGYDKHSFGYRDV GSKIHK ERVD+YGEAYGPGD++GCMICLP+LPEHM+ET+LN   N +   G FP PFL RE+      G   TS  GGVG +G A   G +SY    G  G+G
Sbjct:    1 MSKRSSAADTLSPSFL--TSAALELVSPTDASPQGNVSGSHAPS-------KRTRSTVATAAATASAPPGGKTLPLIEVPKHVTFSIKESAPQLFLSRDLMEVTGCRAGYRMAKGSDCVYSGNWYWECEILEDARTVTAATGGDRQSEE---RAEEDCPHFRVGWATKQGNLQAPVGYDKHSFGYRDVAGSKIHKCERVDYYGEAYGPGDVVGCMICLPILPEHMRETALNVGGNSVQAPG-FPPPFLPREE-----VGVSTTSVVGGVGVIGVAGVAGSASYGRQGGRKGSG 275
The following BLAST results are available for this feature:
BLAST of NO17G01960.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24239.18.900e-6855.97set1 ash2 histone methyltransferase complex subuni... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO17G01960NO17G01960Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO17G01960.1NO17G01960.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO17G01960.1.cds1NO17G01960.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO17G01960.1.cds2NO17G01960.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO17G01960.1.cds3NO17G01960.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO17G01960.1 ID=NO17G01960.1|Name=NO17G01960.1|organism=Nannochloropsis oceanica|type=mRNA|length=1410bp
ATGTCCAAACGCAGCGCCCCTGTCGAGAGTTCCTCCTCCGCCTCCATCTC
TTCAACTTCGTCATCTACCTCGGCCTCTTCAGCAGCCGCTGCCTCCTCCC
CTTCTCCCATCACCGCGACAAACGCCAGCACGAGCGCTGTCTCGGTCGCA
GTCAAGCGCACTCGAGGGGCCATCGCCGCCGCCGCCACTGCTGCCGCTGC
ATCCACCAGAAGCCTACCTTTGCTTGAAATCCCAAAGCAAGTGACCTTCT
CGGTAAAAGAAACTGCGCCTCAATTGTCGTTGTCGCGGGACTTGTTAGAG
GTGACAGGCTGTCGGGCGGGGTACCGCATGAGCAAGGCGAGTGATTCTGT
CTACGCGGGCAACTGGTACTGGGAATGCGAAATCCTCGAGACACTTCCCA
CCACAACTCCTACTGCGGACAGTCACAATGAGGATTACATAGGAGCAGCA
GTAGAAGACCAACCACATTTTCGAGTTGGATGGGCAACGAAGCAAGGCAA
CATCCAAGCTCCGGTCGGATACGACAAACACAGCTTCGGCTACCGCGACG
TAAGGGGCTCCAAAATCCACAAAAGCGAGCGTGTGGACCACTATGGTGAG
GCGTATGGCCCTGGAGACATAATAGGATGCATGATTTGCTTGCCCGTCCT
ACCAGAACACATGCAGGAGACATCTTTAAATGGGAGCAGCAATCCTCTAC
TGCAGGGCGGGGTCTTCCCCCACCCCTTTCTCAACCGCGAAGACAGCTAC
AACAGTGCTTCAGGCAGTGTGGCTACCTCAGCTAGCGGTGGTGTTGGTTG
CGTTGGTGGTGCTGTGGGTGGCGGTGGAAGCAGCTACAGCAATGGTAGCA
ATGGTAATGGCACCACCACCACCCTGGACACCACCACAACCAAGGACACC
GCCAACAACAATTACAACAACAACAATGACAACAATAACAACAGTAATGA
CAATAGAAATAACAATTCCAGCAGCAGCAATGGTGGGAATGCTGCGGGCG
AAATAGAGGGTGGTATTGAGGATGAGATACTCAGGAAGGAGTTGGAGGCC
TTGGGGAACCATGTAAGGTTTTTTAAGAATGGAAAGGACCAGGGTCCGGC
GTACACGCAGATTGTGGGAGCGCGCTACTACCCTGCTGCCTCCATTTTCC
TCACAGGAAGGGTGCGTGGTAACTACGGTCCTTCCTGGATCTGCCCTCCA
GAGACTTCCATCCCTTTTTCGCCCATGTCTGCTGTCAAAGAAAGCTTGAA
ACGAGATGAGTTGAACTTGTACAACCAGGGGGTGAATGAACGGAGGGCAG
CATTGATGGTGCGCAGAAAGCTGCTGCTGCAGCAGCAGCAGCAGCAAGAA
CAACAGCAGGCGGAGATTGCGCAGCAGCATCTGAAAAAGGAGGAGAAGGA
GGATGCATAA
back to top

protein sequence of NO17G01960.1

>NO17G01960.1-protein ID=NO17G01960.1-protein|Name=NO17G01960.1|organism=Nannochloropsis oceanica|type=polypeptide|length=470bp
MSKRSAPVESSSSASISSTSSSTSASSAAAASSPSPITATNASTSAVSVA
VKRTRGAIAAAATAAAASTRSLPLLEIPKQVTFSVKETAPQLSLSRDLLE
VTGCRAGYRMSKASDSVYAGNWYWECEILETLPTTTPTADSHNEDYIGAA
VEDQPHFRVGWATKQGNIQAPVGYDKHSFGYRDVRGSKIHKSERVDHYGE
AYGPGDIIGCMICLPVLPEHMQETSLNGSSNPLLQGGVFPHPFLNREDSY
NSASGSVATSASGGVGCVGGAVGGGGSSYSNGSNGNGTTTTLDTTTTKDT
ANNNYNNNNDNNNNSNDNRNNNSSSSNGGNAAGEIEGGIEDEILRKELEA
LGNHVRFFKNGKDQGPAYTQIVGARYYPAASIFLTGRVRGNYGPSWICPP
ETSIPFSPMSAVKESLKRDELNLYNQGVNERRAALMVRRKLLLQQQQQQE
QQQAEIAQQHLKKEEKEDA*
back to top

mRNA from alignment at chr17:559362..561114-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO17G01960.1 ID=NO17G01960.1|Name=NO17G01960.1|organism=Nannochloropsis oceanica|type=mRNA|length=1753bp|location=Sequence derived from alignment at chr17:559362..561114- (Nannochloropsis oceanica)
ATGTCCAAACGCAGCGCCCCTGTCGAGGTAAAACCCATTAAGCGCGGCCT
CCCCACTTCTCTCGGCGTACTTCTCTCCACACGACCCTTACCTTCCCTCC
GGCCCCGCACAACAATTCAGAGTTCCTCCTCCGCCTCCATCTCTTCAACT
TCGTCATCTACCTCGGCCTCTTCAGCAGCCGCTGCCTCCTCCCCTTCTCC
CATCACCGCGACAAACGCCAGCACGAGCGCTGTCTCGGTCGCAGTCAAGC
GCACTCGAGGGGCCATCGCCGCCGCCGCCACTGCTGCCGCTGCATCCACC
AGAAGCCTACCTTTGCTTGAAATCCCAAAGCAAGTGACCTTCTCGGTAAA
AGAAACTGCGCCTCAATTGTCGTTGTCGCGGGACTTGTTAGAGGTGACAG
GCTGTCGGGCGGGGTACCGCATGAGCAAGGCGAGTGATTCTGTCTACGCG
GGCAACTGGTACTGGGAATGCGAAATCCTCGAGACACTTCCCACCACAAC
TCCTACTGCGGACAGTCACAATGAGGATTACATAGGAGCAGCAGTAGAAG
ACCAACCACATTTTCGAGTTGGATGGGCAACGAAGCAAGGCAACATCCAA
GCTCCGGTCGGATACGACAAACACAGCTTCGGCTACCGCGACGTAAGGGG
CTCCAAAATCCACAAAAGCGAGCGTGTGGACCACTATGGTGAGGCGTATG
GCCCTGGAGACATAATAGGATGCATGATTTGCTTGCCCGTCCTACCAGAA
CACATGCAGGAGACATCTTTAAATGGGAGCAGCAATCCTCTACTGCAGGG
CGGGGTCTTCCCCCACCCCTTTCTCAACCGCGAAGACAGCTACAACAGTG
CTTCAGGCAGTGTGGCTACCTCAGCTAGCGGTGGTGTTGGTTGCGTTGGT
GGTGCTGTGGGTGGCGGTGGAAGCAGCTACAGCAATGGTAGCAATGGTAA
TGGCACCACCACCACCCTGGACACCACCACAACCAAGGACACCGCCAACA
ACAATTACAACAACAACAATGACAACAATAACAACAGTAATGACAATAGA
AATAACAATTCCAGCAGCAGCAATGGTGGGAATGCTGCGGGCGAAATAGA
GGGTGGTATTGAGGATGAGATACTCAGGAAGGAGTTGGAGGCCTTGGGGA
ACCATGTAAGGTTTTTTAAGAATGGAAAGGACCAGGGTCCGGCGTACACG
CAGATTGTGGGAGGTAAAGAGGGGACGAGTGGGAGGAAAGAAGAGGGAGA
GGAGGGGAGGGAAGAAGGAAGGTGGTGGGTGATGGAGGGAGCTGATGGTA
GTCGTTTTGCTATATGGCAGTTTAGGTGCATTACTATGTTTACTTTCATT
TTCGGCATCTCTCATGTTCCCCGCCTCTTTATCTCTCTTTCTTTCTCATA
CACACATACACACGTTCTCATCCATATTCTCCTCAATCATTTCCACTCCG
TCCCTCCCCGCAGCGCGCTACTACCCTGCTGCCTCCATTTTCCTCACAGG
AAGGGTGCGTGGTAACTACGGTCCTTCCTGGATCTGCCCTCCAGAGACTT
CCATCCCTTTTTCGCCCATGTCTGCTGTCAAAGAAAGCTTGAAACGAGAT
GAGTTGAACTTGTACAACCAGGGGGTGAATGAACGGAGGGCAGCATTGAT
GGTGCGCAGAAAGCTGCTGCTGCAGCAGCAGCAGCAGCAAGAACAACAGC
AGGCGGAGATTGCGCAGCAGCATCTGAAAAAGGAGGAGAAGGAGGATGCA
TAA
back to top

Coding sequence (CDS) from alignment at chr17:559362..561114-

>NO17G01960.1 ID=NO17G01960.1|Name=NO17G01960.1|organism=Nannochloropsis oceanica|type=CDS|length=1410bp|location=Sequence derived from alignment at chr17:559362..561114- (Nannochloropsis oceanica)
ATGTCCAAACGCAGCGCCCCTGTCGAGAGTTCCTCCTCCGCCTCCATCTC
TTCAACTTCGTCATCTACCTCGGCCTCTTCAGCAGCCGCTGCCTCCTCCC
CTTCTCCCATCACCGCGACAAACGCCAGCACGAGCGCTGTCTCGGTCGCA
GTCAAGCGCACTCGAGGGGCCATCGCCGCCGCCGCCACTGCTGCCGCTGC
ATCCACCAGAAGCCTACCTTTGCTTGAAATCCCAAAGCAAGTGACCTTCT
CGGTAAAAGAAACTGCGCCTCAATTGTCGTTGTCGCGGGACTTGTTAGAG
GTGACAGGCTGTCGGGCGGGGTACCGCATGAGCAAGGCGAGTGATTCTGT
CTACGCGGGCAACTGGTACTGGGAATGCGAAATCCTCGAGACACTTCCCA
CCACAACTCCTACTGCGGACAGTCACAATGAGGATTACATAGGAGCAGCA
GTAGAAGACCAACCACATTTTCGAGTTGGATGGGCAACGAAGCAAGGCAA
CATCCAAGCTCCGGTCGGATACGACAAACACAGCTTCGGCTACCGCGACG
TAAGGGGCTCCAAAATCCACAAAAGCGAGCGTGTGGACCACTATGGTGAG
GCGTATGGCCCTGGAGACATAATAGGATGCATGATTTGCTTGCCCGTCCT
ACCAGAACACATGCAGGAGACATCTTTAAATGGGAGCAGCAATCCTCTAC
TGCAGGGCGGGGTCTTCCCCCACCCCTTTCTCAACCGCGAAGACAGCTAC
AACAGTGCTTCAGGCAGTGTGGCTACCTCAGCTAGCGGTGGTGTTGGTTG
CGTTGGTGGTGCTGTGGGTGGCGGTGGAAGCAGCTACAGCAATGGTAGCA
ATGGTAATGGCACCACCACCACCCTGGACACCACCACAACCAAGGACACC
GCCAACAACAATTACAACAACAACAATGACAACAATAACAACAGTAATGA
CAATAGAAATAACAATTCCAGCAGCAGCAATGGTGGGAATGCTGCGGGCG
AAATAGAGGGTGGTATTGAGGATGAGATACTCAGGAAGGAGTTGGAGGCC
TTGGGGAACCATGTAAGGTTTTTTAAGAATGGAAAGGACCAGGGTCCGGC
GTACACGCAGATTGTGGGAGCGCGCTACTACCCTGCTGCCTCCATTTTCC
TCACAGGAAGGGTGCGTGGTAACTACGGTCCTTCCTGGATCTGCCCTCCA
GAGACTTCCATCCCTTTTTCGCCCATGTCTGCTGTCAAAGAAAGCTTGAA
ACGAGATGAGTTGAACTTGTACAACCAGGGGGTGAATGAACGGAGGGCAG
CATTGATGGTGCGCAGAAAGCTGCTGCTGCAGCAGCAGCAGCAGCAAGAA
CAACAGCAGGCGGAGATTGCGCAGCAGCATCTGAAAAAGGAGGAGAAGGA
GGATGCATAA
back to top
Synonyms
Publications