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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr17 | genome | chr17:559362..561114 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO17G01960.1 vs.
Match: EWM24239.1 (set1 ash2 histone methyltransferase complex subunit ash2 [Nannochloropsis gaditana]) HSP 1 Score: 267.3 bits (682), Expect = 8.900e-68 Identity = 164/293 (55.97%), Postives = 201/293 (68.60%), Query Frame = 0
Query: 1 MSKRSAPVESSSSASISSTSSSTSASSAAAASSPSPITATNASTSAVSVAVKRTRGAIAAAATAAAAST--RSLPLLEIPKQVTFSVKETAPQLSLSRDLLEVTGCRAGYRMSKASDSVYAGNWYWECEILETLPTTTPTA--DSHNEDYIGAAVEDQPHFRVGWATKQGNIQAPVGYDKHSFGYRDVRGSKIHKSERVDHYGEAYGPGDIIGCMICLPVLPEHMQETSLNGSSNPLLQGGVFPHPFLNREDSYNSASGSVATSASGGVGCVGGAVGGGGSSY--SNGSNGNG 288
MSKRS+ ++ S + + TS++ S AS ++ ++A + KRTR +A AA A+A ++LPL+E+PK VTFS+KE+APQL LSRDL+EVTGCRAGYRM+K SD VY+GNWYWECEILE T T D +E+ A ED PHFRVGWATKQGN+QAPVGYDKHSFGYRDV GSKIHK ERVD+YGEAYGPGD++GCMICLP+LPEHM+ET+LN N + G FP PFL RE+ G TS GGVG +G A G +SY G G+G
Sbjct: 1 MSKRSSAADTLSPSFL--TSAALELVSPTDASPQGNVSGSHAPS-------KRTRSTVATAAATASAPPGGKTLPLIEVPKHVTFSIKESAPQLFLSRDLMEVTGCRAGYRMAKGSDCVYSGNWYWECEILEDARTVTAATGGDRQSEE---RAEEDCPHFRVGWATKQGNLQAPVGYDKHSFGYRDVAGSKIHKCERVDYYGEAYGPGDVVGCMICLPILPEHMRETALNVGGNSVQAPG-FPPPFLPREE-----VGVSTTSVVGGVGVIGVAGVAGSASYGRQGGRKGSG 275
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO17G01960.1 ID=NO17G01960.1|Name=NO17G01960.1|organism=Nannochloropsis oceanica|type=mRNA|length=1410bp ATGTCCAAACGCAGCGCCCCTGTCGAGAGTTCCTCCTCCGCCTCCATCTC TTCAACTTCGTCATCTACCTCGGCCTCTTCAGCAGCCGCTGCCTCCTCCC CTTCTCCCATCACCGCGACAAACGCCAGCACGAGCGCTGTCTCGGTCGCA GTCAAGCGCACTCGAGGGGCCATCGCCGCCGCCGCCACTGCTGCCGCTGC ATCCACCAGAAGCCTACCTTTGCTTGAAATCCCAAAGCAAGTGACCTTCT CGGTAAAAGAAACTGCGCCTCAATTGTCGTTGTCGCGGGACTTGTTAGAG GTGACAGGCTGTCGGGCGGGGTACCGCATGAGCAAGGCGAGTGATTCTGT CTACGCGGGCAACTGGTACTGGGAATGCGAAATCCTCGAGACACTTCCCA CCACAACTCCTACTGCGGACAGTCACAATGAGGATTACATAGGAGCAGCA GTAGAAGACCAACCACATTTTCGAGTTGGATGGGCAACGAAGCAAGGCAA CATCCAAGCTCCGGTCGGATACGACAAACACAGCTTCGGCTACCGCGACG TAAGGGGCTCCAAAATCCACAAAAGCGAGCGTGTGGACCACTATGGTGAG GCGTATGGCCCTGGAGACATAATAGGATGCATGATTTGCTTGCCCGTCCT ACCAGAACACATGCAGGAGACATCTTTAAATGGGAGCAGCAATCCTCTAC TGCAGGGCGGGGTCTTCCCCCACCCCTTTCTCAACCGCGAAGACAGCTAC AACAGTGCTTCAGGCAGTGTGGCTACCTCAGCTAGCGGTGGTGTTGGTTG CGTTGGTGGTGCTGTGGGTGGCGGTGGAAGCAGCTACAGCAATGGTAGCA ATGGTAATGGCACCACCACCACCCTGGACACCACCACAACCAAGGACACC GCCAACAACAATTACAACAACAACAATGACAACAATAACAACAGTAATGA CAATAGAAATAACAATTCCAGCAGCAGCAATGGTGGGAATGCTGCGGGCG AAATAGAGGGTGGTATTGAGGATGAGATACTCAGGAAGGAGTTGGAGGCC TTGGGGAACCATGTAAGGTTTTTTAAGAATGGAAAGGACCAGGGTCCGGC GTACACGCAGATTGTGGGAGCGCGCTACTACCCTGCTGCCTCCATTTTCC TCACAGGAAGGGTGCGTGGTAACTACGGTCCTTCCTGGATCTGCCCTCCA GAGACTTCCATCCCTTTTTCGCCCATGTCTGCTGTCAAAGAAAGCTTGAA ACGAGATGAGTTGAACTTGTACAACCAGGGGGTGAATGAACGGAGGGCAG CATTGATGGTGCGCAGAAAGCTGCTGCTGCAGCAGCAGCAGCAGCAAGAA CAACAGCAGGCGGAGATTGCGCAGCAGCATCTGAAAAAGGAGGAGAAGGA GGATGCATAA back to topprotein sequence of NO17G01960.1 >NO17G01960.1-protein ID=NO17G01960.1-protein|Name=NO17G01960.1|organism=Nannochloropsis oceanica|type=polypeptide|length=470bp MSKRSAPVESSSSASISSTSSSTSASSAAAASSPSPITATNASTSAVSVA VKRTRGAIAAAATAAAASTRSLPLLEIPKQVTFSVKETAPQLSLSRDLLE VTGCRAGYRMSKASDSVYAGNWYWECEILETLPTTTPTADSHNEDYIGAA VEDQPHFRVGWATKQGNIQAPVGYDKHSFGYRDVRGSKIHKSERVDHYGE AYGPGDIIGCMICLPVLPEHMQETSLNGSSNPLLQGGVFPHPFLNREDSY NSASGSVATSASGGVGCVGGAVGGGGSSYSNGSNGNGTTTTLDTTTTKDT ANNNYNNNNDNNNNSNDNRNNNSSSSNGGNAAGEIEGGIEDEILRKELEA LGNHVRFFKNGKDQGPAYTQIVGARYYPAASIFLTGRVRGNYGPSWICPP ETSIPFSPMSAVKESLKRDELNLYNQGVNERRAALMVRRKLLLQQQQQQE QQQAEIAQQHLKKEEKEDA* back to topmRNA from alignment at chr17:559362..561114- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO17G01960.1 ID=NO17G01960.1|Name=NO17G01960.1|organism=Nannochloropsis oceanica|type=mRNA|length=1753bp|location=Sequence derived from alignment at chr17:559362..561114- (Nannochloropsis oceanica) ATGTCCAAACGCAGCGCCCCTGTCGAGGTAAAACCCATTAAGCGCGGCCT
CCCCACTTCTCTCGGCGTACTTCTCTCCACACGACCCTTACCTTCCCTCC
GGCCCCGCACAACAATTCAGAGTTCCTCCTCCGCCTCCATCTCTTCAACT
TCGTCATCTACCTCGGCCTCTTCAGCAGCCGCTGCCTCCTCCCCTTCTCC
CATCACCGCGACAAACGCCAGCACGAGCGCTGTCTCGGTCGCAGTCAAGC
GCACTCGAGGGGCCATCGCCGCCGCCGCCACTGCTGCCGCTGCATCCACC
AGAAGCCTACCTTTGCTTGAAATCCCAAAGCAAGTGACCTTCTCGGTAAA
AGAAACTGCGCCTCAATTGTCGTTGTCGCGGGACTTGTTAGAGGTGACAG
GCTGTCGGGCGGGGTACCGCATGAGCAAGGCGAGTGATTCTGTCTACGCG
GGCAACTGGTACTGGGAATGCGAAATCCTCGAGACACTTCCCACCACAAC
TCCTACTGCGGACAGTCACAATGAGGATTACATAGGAGCAGCAGTAGAAG
ACCAACCACATTTTCGAGTTGGATGGGCAACGAAGCAAGGCAACATCCAA
GCTCCGGTCGGATACGACAAACACAGCTTCGGCTACCGCGACGTAAGGGG
CTCCAAAATCCACAAAAGCGAGCGTGTGGACCACTATGGTGAGGCGTATG
GCCCTGGAGACATAATAGGATGCATGATTTGCTTGCCCGTCCTACCAGAA
CACATGCAGGAGACATCTTTAAATGGGAGCAGCAATCCTCTACTGCAGGG
CGGGGTCTTCCCCCACCCCTTTCTCAACCGCGAAGACAGCTACAACAGTG
CTTCAGGCAGTGTGGCTACCTCAGCTAGCGGTGGTGTTGGTTGCGTTGGT
GGTGCTGTGGGTGGCGGTGGAAGCAGCTACAGCAATGGTAGCAATGGTAA
TGGCACCACCACCACCCTGGACACCACCACAACCAAGGACACCGCCAACA
ACAATTACAACAACAACAATGACAACAATAACAACAGTAATGACAATAGA
AATAACAATTCCAGCAGCAGCAATGGTGGGAATGCTGCGGGCGAAATAGA
GGGTGGTATTGAGGATGAGATACTCAGGAAGGAGTTGGAGGCCTTGGGGA
ACCATGTAAGGTTTTTTAAGAATGGAAAGGACCAGGGTCCGGCGTACACG
CAGATTGTGGGAGGTAAAGAGGGGACGAGTGGGAGGAAAGAAGAGGGAGA
GGAGGGGAGGGAAGAAGGAAGGTGGTGGGTGATGGAGGGAGCTGATGGTA
GTCGTTTTGCTATATGGCAGTTTAGGTGCATTACTATGTTTACTTTCATT
TTCGGCATCTCTCATGTTCCCCGCCTCTTTATCTCTCTTTCTTTCTCATA
CACACATACACACGTTCTCATCCATATTCTCCTCAATCATTTCCACTCCG
TCCCTCCCCGCAGCGCGCTACTACCCTGCTGCCTCCATTTTCCTCACAGG
AAGGGTGCGTGGTAACTACGGTCCTTCCTGGATCTGCCCTCCAGAGACTT
CCATCCCTTTTTCGCCCATGTCTGCTGTCAAAGAAAGCTTGAAACGAGAT
GAGTTGAACTTGTACAACCAGGGGGTGAATGAACGGAGGGCAGCATTGAT
GGTGCGCAGAAAGCTGCTGCTGCAGCAGCAGCAGCAGCAAGAACAACAGC
AGGCGGAGATTGCGCAGCAGCATCTGAAAAAGGAGGAGAAGGAGGATGCA
TAA back to topCoding sequence (CDS) from alignment at chr17:559362..561114- >NO17G01960.1 ID=NO17G01960.1|Name=NO17G01960.1|organism=Nannochloropsis oceanica|type=CDS|length=1410bp|location=Sequence derived from alignment at chr17:559362..561114- (Nannochloropsis oceanica) ATGTCCAAACGCAGCGCCCCTGTCGAGAGTTCCTCCTCCGCCTCCATCTC TTCAACTTCGTCATCTACCTCGGCCTCTTCAGCAGCCGCTGCCTCCTCCC CTTCTCCCATCACCGCGACAAACGCCAGCACGAGCGCTGTCTCGGTCGCA GTCAAGCGCACTCGAGGGGCCATCGCCGCCGCCGCCACTGCTGCCGCTGC ATCCACCAGAAGCCTACCTTTGCTTGAAATCCCAAAGCAAGTGACCTTCT CGGTAAAAGAAACTGCGCCTCAATTGTCGTTGTCGCGGGACTTGTTAGAG GTGACAGGCTGTCGGGCGGGGTACCGCATGAGCAAGGCGAGTGATTCTGT CTACGCGGGCAACTGGTACTGGGAATGCGAAATCCTCGAGACACTTCCCA CCACAACTCCTACTGCGGACAGTCACAATGAGGATTACATAGGAGCAGCA GTAGAAGACCAACCACATTTTCGAGTTGGATGGGCAACGAAGCAAGGCAA CATCCAAGCTCCGGTCGGATACGACAAACACAGCTTCGGCTACCGCGACG TAAGGGGCTCCAAAATCCACAAAAGCGAGCGTGTGGACCACTATGGTGAG GCGTATGGCCCTGGAGACATAATAGGATGCATGATTTGCTTGCCCGTCCT ACCAGAACACATGCAGGAGACATCTTTAAATGGGAGCAGCAATCCTCTAC TGCAGGGCGGGGTCTTCCCCCACCCCTTTCTCAACCGCGAAGACAGCTAC AACAGTGCTTCAGGCAGTGTGGCTACCTCAGCTAGCGGTGGTGTTGGTTG CGTTGGTGGTGCTGTGGGTGGCGGTGGAAGCAGCTACAGCAATGGTAGCA ATGGTAATGGCACCACCACCACCCTGGACACCACCACAACCAAGGACACC GCCAACAACAATTACAACAACAACAATGACAACAATAACAACAGTAATGA CAATAGAAATAACAATTCCAGCAGCAGCAATGGTGGGAATGCTGCGGGCG AAATAGAGGGTGGTATTGAGGATGAGATACTCAGGAAGGAGTTGGAGGCC TTGGGGAACCATGTAAGGTTTTTTAAGAATGGAAAGGACCAGGGTCCGGC GTACACGCAGATTGTGGGAGCGCGCTACTACCCTGCTGCCTCCATTTTCC TCACAGGAAGGGTGCGTGGTAACTACGGTCCTTCCTGGATCTGCCCTCCA GAGACTTCCATCCCTTTTTCGCCCATGTCTGCTGTCAAAGAAAGCTTGAA ACGAGATGAGTTGAACTTGTACAACCAGGGGGTGAATGAACGGAGGGCAG CATTGATGGTGCGCAGAAAGCTGCTGCTGCAGCAGCAGCAGCAGCAAGAA CAACAGCAGGCGGAGATTGCGCAGCAGCATCTGAAAAAGGAGGAGAAGGA GGATGCATAA back to top
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