NO17G01930.1, NO17G01930.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO17G01930.1
Unique NameNO17G01930.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1283
Alignment locationchr17:553038..554734 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr17genomechr17:553038..554734 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO17G01930.1 vs.
Match: EWM24242.1 (Transcriptional regulator TACO1-like protein [Nannochloropsis gaditana])

HSP 1 Score: 413.3 bits (1061), Expect = 6.500e-112
Identity = 227/307 (73.94%), Postives = 261/307 (85.02%), Query Frame = 0 
Query:    6 GCLALALILCLSLVQAFLLPSPTAP-----CPSSAATSRATNV---FEQLQPYRSSRINRLYMGRRAAKNAARKGKSDALKTKIYASYGKKLVMAVKAGGPEPDVNRALAVLIREAKAQGVPTDNVQRAIQRGSSANEVDYKEAVYEAYGYGGAGIIINCLTDNTNRAKTEINNVIKKSSVKLGTVGSVSYNFERKGRLDLAGMMDEDSVLEAALEADVEEVDTKTNEEENTTSVWVDAASVSGLREVLLERGVEIKASTLVNVPKALVDCSDEDFEGNMNVIEALEELDDVDSVEHNVAMEDEDEG 305
            GC+ +  I+ LS  QAF LPS   P      P   A + + NV     Q QP R +RINRL+MGRRAAKNAARKGKSDALKTK+YA+YGKKLVMAVKAGGP+P+VNRALAV+IREAKAQGVP+DNVQRAIQRGS+ANE DYKEAVYEAYGYGGAG+IINCLTDNTNRAKTEI+NVIKK+ VKL T GSV++NF+RKGR+DLAG+++ED+VLEAALEADVE+VDT+ NEEE  TSV VD ASVS LREV L +G EIKAS +VNVPK L+DCSDEDFEGNM+VIEALEELDDVDSVEHNVAM++ +EG
Sbjct:   11 GCMFVVFIISLSPGQAFFLPSCRPPEAATSAPGILADTMSGNVCLPLRQPQP-RCNRINRLFMGRRAAKNAARKGKSDALKTKVYATYGKKLVMAVKAGGPDPEVNRALAVMIREAKAQGVPSDNVQRAIQRGSNANEADYKEAVYEAYGYGGAGLIINCLTDNTNRAKTEISNVIKKTDVKLATSGSVAFNFDRKGRIDLAGIVEEDAVLEAALEADVEDVDTRVNEEEGVTSVLVDPASVSSLREVFLGKGREIKASLMVNVPKLLMDCSDEDFEGNMSVIEALEELDDVDSVEHNVAMDEGEEG 316
The following BLAST results are available for this feature:
BLAST of NO17G01930.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24242.16.500e-11273.94Transcriptional regulator TACO1-like protein [Nann... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO17G01930NO17G01930Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO17G01930.1NO17G01930.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO17G01930.1.cds1NO17G01930.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO17G01930.1.cds2NO17G01930.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO17G01930.1.cds3NO17G01930.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO17G01930.1 ID=NO17G01930.1|Name=NO17G01930.1|organism=Nannochloropsis oceanica|type=mRNA|length=1283bp
AGCACAAGCGCACTAAGGTGACCTACATTGAGTTATTAGACGAGAATGTC
AGTGTCAGCGTCTGAAGATTGACTTGAGGTTGGCTAGGTAGTCAAAGCCT
TGTCCAAAAGCCCTCGAGTATCCTGACCGATTTTCTCACAAGCAGTTGCA
GTCTCTTCGCTTCCTCTGCCTCACGACCGAAAATCCCACTGAAACCTGCG
GCAAACACTCAATCACAGGCTTTGACAACACAACACCAGCATAATAATGA
CACCATCTACCGGATGTCTGGCTCTGGCGCTGATTCTCTGCTTGTCTCTG
GTGCAAGCCTTCCTGTTACCCTCCCCGACGGCCCCCTGTCCATCTTCCGC
TGCGACGAGCAGGGCCACCAACGTGTTTGAGCAGCTGCAGCCATACCGGA
GTAGCCGTATAAACAGGCTGTACATGGGTCGTCGCGCCGCCAAGAACGCC
GCGCGCAAGGGCAAATCGGACGCCCTCAAAACCAAAATTTATGCCTCGTA
CGGGAAGAAGCTTGTCATGGCGGTCAAGGCTGGGGGCCCCGAACCTGACG
TGAATCGTGCCCTGGCTGTCTTAATCCGCGAGGCAAAGGCCCAGGGTGTG
CCGACTGACAATGTTCAACGGGCCATCCAACGAGGTAGCAGCGCCAACGA
GGTTGACTACAAGGAGGCGGTGTACGAGGCCTATGGCTACGGTGGAGCCG
GAATCATTATTAATTGTCTGACAGATAATACGAACCGAGCCAAGACGGAG
ATCAATAATGTCATCAAGAAGTCGTCGGTGAAATTAGGAACAGTAGGGAG
TGTGTCGTATAATTTTGAGAGGAAGGGAAGGCTGGATCTGGCGGGGATGA
TGGACGAGGATAGTGTGTTGGAGGCTGCATTAGAGGCAGATGTGGAAGAG
GTGGACACCAAAACGAACGAGGAGGAGAACACAACGAGCGTGTGGGTGGA
TGCGGCGAGTGTCTCGGGGTTGAGGGAGGTGTTGTTGGAGAGGGGTGTGG
AGATCAAGGCGTCCACGCTGGTGAATGTGCCCAAGGCCCTCGTGGACTGC
TCGGATGAGGATTTCGAGGGGAACATGAATGTGATTGAGGCACTGGAGGA
GCTGGACGATGTAGACTCAGTGGAGCATAACGTGGCCATGGAGGATGAGG
ATGAGGGGGAGTAAGGGAGGGGGTGGGGGGATGTGGATGGAAATAACAGC
ACCAAAGAGAGGAACAAGGGTCAGGCAGGGCAACAGCAGTGCATATTGAA
AGGAAAAGAACGAACATCGACACAGAGAGAAAG
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protein sequence of NO17G01930.1

>NO17G01930.1-protein ID=NO17G01930.1-protein|Name=NO17G01930.1|organism=Nannochloropsis oceanica|type=polypeptide|length=306bp
MTPSTGCLALALILCLSLVQAFLLPSPTAPCPSSAATSRATNVFEQLQPY
RSSRINRLYMGRRAAKNAARKGKSDALKTKIYASYGKKLVMAVKAGGPEP
DVNRALAVLIREAKAQGVPTDNVQRAIQRGSSANEVDYKEAVYEAYGYGG
AGIIINCLTDNTNRAKTEINNVIKKSSVKLGTVGSVSYNFERKGRLDLAG
MMDEDSVLEAALEADVEEVDTKTNEEENTTSVWVDAASVSGLREVLLERG
VEIKASTLVNVPKALVDCSDEDFEGNMNVIEALEELDDVDSVEHNVAMED
EDEGE*
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mRNA from alignment at chr17:553038..554734+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO17G01930.1 ID=NO17G01930.1|Name=NO17G01930.1|organism=Nannochloropsis oceanica|type=mRNA|length=1697bp|location=Sequence derived from alignment at chr17:553038..554734+ (Nannochloropsis oceanica)
AGCACAAGCGCACTAAGGTGACCTACATTGAGTTATTAGACGAGAATGTC
AGTGTCAGCGTCTGAAGATTGACTTGAGGTTGGCTAGGTAGTCAAAGCCT
TGTCCAAAAGCCCTCGAGTATCCTGACCGATTTTCTCACAAGCAGTTGCA
GTCTCTTCGCTTCCTCTGCCTCACGACCGAAAATCCCACTGAAACCTGCG
GCAAACACTCAATCACAGGCTTTGACAACACAACACCAGCATAATAATGA
CACCATCTACCGGATGTCTGGCTCTGGCGCTGATTCTCTGCTTGTCTCTG
GTGCAAGCCTTCCTGTTACCCTCCCCGACGGCCCCCTGTCCATCTTCCGC
TGCGACGAGCAGGGCCACCAACGTGTTTGAGCAGCTGCAGCCATACCGGA
GTAGCCGTATAAACAGGTACATATTATGGTTCAGGAGAATAGAAGAGGCA
ACGTTTCAAAAGTGAGATTGGTAGATAAATGGAGCACTGAGAGTGCGAGT
GAGGAGGATAGGGAGGGGGACTAGCCTGCGGGCGTCGATCAAGAAAGACC
CTTGCCAGCCGTGATAGAAAATCACAGCATACTTCAGCACTCTCAAGCCA
TAAATATTTCCAATTAAAATCCATCCATCCACTACAGGCTGTACATGGGT
CGTCGCGCCGCCAAGAACGCCGCGCGCAAGGGCAAATCGGACGCCCTCAA
AACCAAAATTTATGCCTCGTACGGGAAGAAGCTTGTCATGGCGGTCAAGG
CTGGGGGCCCCGAACCTGACGTGAATCGTGCCCTGGCTGTCTTAATCCGC
GAGGCAAAGGCCCAGGGTGTGCCGACTGACAATGTTCAACGGGCCATCCA
ACGAGGTAAGCATATATGGGACGGAGGGAGTAGAGACATGTGGGGTGAAA
AGGAGACTGGAGCAAGCAATTTGGTCTACAAATTGAAGGGACGGCTGTGC
AACATTTCCTGTATTATTCCTTTTTAGTTACGCGTCCCCTTATAGTCTCC
CTATTTTCTCTCTTCGCTTTCCTCCCTCTCTTCGTCCGATCGGAACAGGT
AGCAGCGCCAACGAGGTTGACTACAAGGAGGCGGTGTACGAGGCCTATGG
CTACGGTGGAGCCGGAATCATTATTAATTGTCTGACAGATAATACGAACC
GAGCCAAGACGGAGATCAATAATGTCATCAAGAAGTCGTCGGTGAAATTA
GGAACAGTAGGGAGTGTGTCGTATAATTTTGAGAGGAAGGGAAGGCTGGA
TCTGGCGGGGATGATGGACGAGGATAGTGTGTTGGAGGCTGCATTAGAGG
CAGATGTGGAAGAGGTGGACACCAAAACGAACGAGGAGGAGAACACAACG
AGCGTGTGGGTGGATGCGGCGAGTGTCTCGGGGTTGAGGGAGGTGTTGTT
GGAGAGGGGTGTGGAGATCAAGGCGTCCACGCTGGTGAATGTGCCCAAGG
CCCTCGTGGACTGCTCGGATGAGGATTTCGAGGGGAACATGAATGTGATT
GAGGCACTGGAGGAGCTGGACGATGTAGACTCAGTGGAGCATAACGTGGC
CATGGAGGATGAGGATGAGGGGGAGTAAGGGAGGGGGTGGGGGGATGTGG
ATGGAAATAACAGCACCAAAGAGAGGAACAAGGGTCAGGCAGGGCAACAG
CAGTGCATATTGAAAGGAAAAGAACGAACATCGACACAGAGAGAAAG
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Coding sequence (CDS) from alignment at chr17:553038..554734+

>NO17G01930.1 ID=NO17G01930.1|Name=NO17G01930.1|organism=Nannochloropsis oceanica|type=CDS|length=918bp|location=Sequence derived from alignment at chr17:553038..554734+ (Nannochloropsis oceanica)
ATGACACCATCTACCGGATGTCTGGCTCTGGCGCTGATTCTCTGCTTGTC
TCTGGTGCAAGCCTTCCTGTTACCCTCCCCGACGGCCCCCTGTCCATCTT
CCGCTGCGACGAGCAGGGCCACCAACGTGTTTGAGCAGCTGCAGCCATAC
CGGAGTAGCCGTATAAACAGGCTGTACATGGGTCGTCGCGCCGCCAAGAA
CGCCGCGCGCAAGGGCAAATCGGACGCCCTCAAAACCAAAATTTATGCCT
CGTACGGGAAGAAGCTTGTCATGGCGGTCAAGGCTGGGGGCCCCGAACCT
GACGTGAATCGTGCCCTGGCTGTCTTAATCCGCGAGGCAAAGGCCCAGGG
TGTGCCGACTGACAATGTTCAACGGGCCATCCAACGAGGTAGCAGCGCCA
ACGAGGTTGACTACAAGGAGGCGGTGTACGAGGCCTATGGCTACGGTGGA
GCCGGAATCATTATTAATTGTCTGACAGATAATACGAACCGAGCCAAGAC
GGAGATCAATAATGTCATCAAGAAGTCGTCGGTGAAATTAGGAACAGTAG
GGAGTGTGTCGTATAATTTTGAGAGGAAGGGAAGGCTGGATCTGGCGGGG
ATGATGGACGAGGATAGTGTGTTGGAGGCTGCATTAGAGGCAGATGTGGA
AGAGGTGGACACCAAAACGAACGAGGAGGAGAACACAACGAGCGTGTGGG
TGGATGCGGCGAGTGTCTCGGGGTTGAGGGAGGTGTTGTTGGAGAGGGGT
GTGGAGATCAAGGCGTCCACGCTGGTGAATGTGCCCAAGGCCCTCGTGGA
CTGCTCGGATGAGGATTTCGAGGGGAACATGAATGTGATTGAGGCACTGG
AGGAGCTGGACGATGTAGACTCAGTGGAGCATAACGTGGCCATGGAGGAT
GAGGATGAGGGGGAGTAA
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Synonyms
Publications