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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr17 | genome | chr17:508849..511178 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO17G01760.1 vs.
Match: EWM24255.1 (putative chloroplastic-like protein [Nannochloropsis gaditana]) HSP 1 Score: 387.9 bits (995), Expect = 2.800e-104 Identity = 206/268 (76.87%), Postives = 231/268 (86.19%), Query Frame = 0
Query: 21 TQGFVGPLKPATS-TTKLSVSFLGNGSSKKGSASKGVLVVGATGKTGKRVVEILQRKGTKVAAGVRDLAKGEETLGRPSGKLSFLEVDVVADSPASLIEKVAGYSAVICATGYSPSGPIDILGPYKVDNKGTIKLAEALVAAGVPKMVLVSSLLTNGWEAGQGLNKNFIILNLFGGVLAAKNNAERKIMKST-LDYTIVRPGGLKEAAPEGQIRYGKADTIFGGSISRYSVAEVCVAALTSKSASNKVVEIVAEPDAAKLSIEQGFAS 287
T+ F+ LK + S +KLSVSF G+ KK +KGVLVVGATGKTGKR+VE+L +KG KV AGVRDLAKGEE LG+ KLSFLEVDVVADSPA+L EKV YSAVICATGYSPSGPID+LGPYKVDN GT KLAEALVAAGVPKMVLVSSLLTNGW AGQGLNKN+IILNLFGGVL AKN AERKIM +T LD+TIVRPGGL+E+ PEG+++YGKADT+FGGSISRYSVAEVCVAAL SK+AS K+VEIV+E DA KL+ EQGFAS
Sbjct: 23 TEAFMSGLKQSGSPASKLSVSFFNAGNDKKVGGNKGVLVVGATGKTGKRIVEVLLKKGRKVTAGVRDLAKGEEALGKAGNKLSFLEVDVVADSPATLAEKVTDYSAVICATGYSPSGPIDLLGPYKVDNMGTTKLAEALVAAGVPKMVLVSSLLTNGWAAGQGLNKNYIILNLFGGVLVAKNTAERKIMATTGLDWTIVRPGGLRESPPEGRVKYGKADTLFGGSISRYSVAEVCVAALDSKAASRKIVEIVSEGDAPKLTFEQGFAS 290
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO17G01760.1 ID=NO17G01760.1|Name=NO17G01760.1|organism=Nannochloropsis oceanica|type=mRNA|length=2253bp
CTGATCATTGTCCGACCCGCATCCGCTACAGAGACCTGACAGCATGAAAT
CCTACTCGACCCTCTTGGGGGCCGCGGCCTTGCTTGCCCTCCAAGTGATG
CCAACCCAAGGGTTCGTGGGGCCCCTGAAGCCAGCCACCTCAACAACCAA
GCTCTCCGTCTCCTTCCTTGGGAATGGTAGCTCCAAGAAGGGTTCTGCCA
GCAAGGGTGTGCTAGTTGTCGGTGCCACAGGGAAAACGGGAAAGCGTGTG
GTAGAAATTTTGCAAAGGAAGGGAACGAAGGTGGCCGCCGGGGTACGGGA
TTTGGCCAAGGGTGAAGAAACCTTGGGCAGGCCCAGTGGAAAGCTTTCCT
TCCTCGAGGTCGATGTCGTCGCGGATTCGCCTGCGTCCCTGATCGAGAAG
GTCGCTGGGTACTCTGCGGTGATATGTGCGACAGGCTACTCGCCTTCCGG
TCCCATTGATATTTTGGGCCCCTACAAAGTTGACAATAAAGGCACTATCA
AGCTTGCCGAGGCGCTCGTTGCCGCAGGCGTCCCCAAAATGGTGCTTGTC
TCGTCTTTGCTTACAAATGGTTGGGAGGCTGGGCAAGGCTTGAACAAGAA
CTTCATAATCCTCAATCTCTTCGGAGGTGTATTGGCTGCGAAGAACAATG
CGGAGCGAAAGATAATGAAGTCGACACTTGACTACACCATAGTTCGACCT
GGTGGGTTAAAGGAAGCTGCTCCAGAAGGCCAAATCAGATACGGCAAGGC
AGATACCATCTTTGGGGGTTCTATTTCTCGTTATTCGGTTGCAGAAGTGT
GCGTGGCCGCTTTGACCTCCAAATCTGCGTCCAATAAAGTGGTAGAGATT
GTTGCGGAACCAGACGCAGCCAAGCTAAGTATCGAGCAAGGGTTCGCCTC
AGTCTAGAGAGTTTCCGCTAGGATTCGTCGACCAAAAGACCGAAATCAAA
ATGTGGACAAAGAATAAGTAGAATGAAAAGAATTGACAAAACCCCTGGCC
CTTTTACAATTTCATTTTTTTAACTTGACTTTCGAGGGGTTGTTTCAGGG
AATGCTGCTAGAAGACGATTCGACATCTCGAAGGCAAGAATAGCAGTATT
TGAATGCAAATTCTATTTAGAAGTAAGAAACAGCTTTGCGGCGATTATTG
TTATGTTGCGTGATGCCGCCTCGACCTCCTCCACCCCTTCCGCCCCGCCC
ACTTTGCTTGCCTTTTCCCCTGTCAGCAGCAACTCCACCCATAAAAGATA
CAGTCTTGTTACCCTTGCCGTCTGCGGGGGAAGCGTGCTTGTTAAAGAGT
TTGACTTGGACCTTGCCCCACCGCACCTTCTTGTTGCTACCGGCATTGCC
AGCCCCTCCCACCGACGGCATAGCAGCACCTCCTCGCTGCACGGAGTCGA
TGTAATAGCCAACGCCCTGTTGCCCCTTCTTGAAGGCGTATCCACACTTG
CCTCCCGCAAACTTCTTGGACGGGATGAATACCGGCTCGGCAGCAGGCGT
GGAGGACGCAGCAGCCGTAAGGGTTTGCTTTTTCACATTCTCTGACGATG
GTGCTGCTTGCCGTGTAGCAGCCCCATTCACCATGACTTTTGTCTTCTTG
ATCGCCGCCGCTGCCGCCGCTGCCGCAGTCTTCCGTGTGGTCGCCGTCTT
TTCCTTCCTTTCCGCGGGCACCTTCACCACAGCATCCTTATGCTTTATCC
CTTGCTGTAGACCCCCGGCCGTTTTGGCTGCACTCATCGTATCTAAGGCC
TTCTCCTTCTCGGCGTTGCGCTTGCCGCTGCTGCTCTTGGTCTCGCTCGG
CTGAATGGCTGGAAGAATGACATTTTTTTTTGTCAGTATCGTCGTATCCT
CTTTTCCACCCTTCTTCGAAAGCTTAGTCTTTTTCTCCGCCTTGTCACCC
AGAGCTCCCTTCGCTGGCTTCGACTCACTCGACACCGGCGTAAGAGTGGG
TGAGGCCATCCGTTTTTCTTCCTTCTTGGCCTTCTTGACGTCGATTACCA
CAGCCAGCTTCTCCCCTCCCTTTCGCTGCTGCTGCTGTTTGAGTGGAACA
ATCTCTCTCTGGGCCTTGCGCTTCTTGCTGTCCTTTCCGGGTGCAGCATG
AGAATCCTCCTCCTCCTCTTCCTCCTCCCCAGCCTCTTTTTCTTTATACT
CCTCATTTTTGGCCTTACCTTCCTCTTCCTTACTTCCAGCCTCATCTTTA
TCTTCATCTTCATCCATCCAATCGTCCTCCTCCTCCTCCTCCTCCTCCTC
CTC back to topprotein sequence of NO17G01760.1 >NO17G01760.1-protein ID=NO17G01760.1-protein|Name=NO17G01760.1|organism=Nannochloropsis oceanica|type=polypeptide|length=288bp
MKSYSTLLGAAALLALQVMPTQGFVGPLKPATSTTKLSVSFLGNGSSKKG
SASKGVLVVGATGKTGKRVVEILQRKGTKVAAGVRDLAKGEETLGRPSGK
LSFLEVDVVADSPASLIEKVAGYSAVICATGYSPSGPIDILGPYKVDNKG
TIKLAEALVAAGVPKMVLVSSLLTNGWEAGQGLNKNFIILNLFGGVLAAK
NNAERKIMKSTLDYTIVRPGGLKEAAPEGQIRYGKADTIFGGSISRYSVA
EVCVAALTSKSASNKVVEIVAEPDAAKLSIEQGFASV* back to topmRNA from alignment at chr17:508849..511178- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO17G01760.1 ID=NO17G01760.1|Name=NO17G01760.1|organism=Nannochloropsis oceanica|type=mRNA|length=2330bp|location=Sequence derived from alignment at chr17:508849..511178- (Nannochloropsis oceanica)
CTGATCATTGTCCGACCCGCATCCGCTACAGAGACCTGACAGCATGAAAT
CCTACTCGACCCTCTTGGGGGCCGCGGCCTTGCTTGCCCTCCAAGTGATG
CCAACCCAAGGGTTCGTGGGGCCCCTGAAGCCAGCCACCTCAACAACCAA
GCTCTCCGTCTCCTTCCTTGGGAATGGTAGCTCCAAGAAGGGTTCTGCCA
GCAAGGGTGTGCTAGTTGTCGGGTACGTCCACTATCTTTCTCGTCCCCTC
CCCTCCCTCCCTTTCTCTAACCCTTGCCTTCCCTCCTTCCTTTCAACAGT
GCCACAGGGAAAACGGGAAAGCGTGTGGTAGAAATTTTGCAAAGGAAGGG
AACGAAGGTGGCCGCCGGGGTACGGGATTTGGCCAAGGGTGAAGAAACCT
TGGGCAGGCCCAGTGGAAAGCTTTCCTTCCTCGAGGTCGATGTCGTCGCG
GATTCGCCTGCGTCCCTGATCGAGAAGGTCGCTGGGTACTCTGCGGTGAT
ATGTGCGACAGGCTACTCGCCTTCCGGTCCCATTGATATTTTGGGCCCCT
ACAAAGTTGACAATAAAGGCACTATCAAGCTTGCCGAGGCGCTCGTTGCC
GCAGGCGTCCCCAAAATGGTGCTTGTCTCGTCTTTGCTTACAAATGGTTG
GGAGGCTGGGCAAGGCTTGAACAAGAACTTCATAATCCTCAATCTCTTCG
GAGGTGTATTGGCTGCGAAGAACAATGCGGAGCGAAAGATAATGAAGTCG
ACACTTGACTACACCATAGTTCGACCTGGTGGGTTAAAGGAAGCTGCTCC
AGAAGGCCAAATCAGATACGGCAAGGCAGATACCATCTTTGGGGGTTCTA
TTTCTCGTTATTCGGTTGCAGAAGTGTGCGTGGCCGCTTTGACCTCCAAA
TCTGCGTCCAATAAAGTGGTAGAGATTGTTGCGGAACCAGACGCAGCCAA
GCTAAGTATCGAGCAAGGGTTCGCCTCAGTCTAGAGAGTTTCCGCTAGGA
TTCGTCGACCAAAAGACCGAAATCAAAATGTGGACAAAGAATAAGTAGAA
TGAAAAGAATTGACAAAACCCCTGGCCCTTTTACAATTTCATTTTTTTAA
CTTGACTTTCGAGGGGTTGTTTCAGGGAATGCTGCTAGAAGACGATTCGA
CATCTCGAAGGCAAGAATAGCAGTATTTGAATGCAAATTCTATTTAGAAG
TAAGAAACAGCTTTGCGGCGATTATTGTTATGTTGCGTGATGCCGCCTCG
ACCTCCTCCACCCCTTCCGCCCCGCCCACTTTGCTTGCCTTTTCCCCTGT
CAGCAGCAACTCCACCCATAAAAGATACAGTCTTGTTACCCTTGCCGTCT
GCGGGGGAAGCGTGCTTGTTAAAGAGTTTGACTTGGACCTTGCCCCACCG
CACCTTCTTGTTGCTACCGGCATTGCCAGCCCCTCCCACCGACGGCATAG
CAGCACCTCCTCGCTGCACGGAGTCGATGTAATAGCCAACGCCCTGTTGC
CCCTTCTTGAAGGCGTATCCACACTTGCCTCCCGCAAACTTCTTGGACGG
GATGAATACCGGCTCGGCAGCAGGCGTGGAGGACGCAGCAGCCGTAAGGG
TTTGCTTTTTCACATTCTCTGACGATGGTGCTGCTTGCCGTGTAGCAGCC
CCATTCACCATGACTTTTGTCTTCTTGATCGCCGCCGCTGCCGCCGCTGC
CGCAGTCTTCCGTGTGGTCGCCGTCTTTTCCTTCCTTTCCGCGGGCACCT
TCACCACAGCATCCTTATGCTTTATCCCTTGCTGTAGACCCCCGGCCGTT
TTGGCTGCACTCATCGTATCTAAGGCCTTCTCCTTCTCGGCGTTGCGCTT
GCCGCTGCTGCTCTTGGTCTCGCTCGGCTGAATGGCTGGAAGAATGACAT
TTTTTTTTGTCAGTATCGTCGTATCCTCTTTTCCACCCTTCTTCGAAAGC
TTAGTCTTTTTCTCCGCCTTGTCACCCAGAGCTCCCTTCGCTGGCTTCGA
CTCACTCGACACCGGCGTAAGAGTGGGTGAGGCCATCCGTTTTTCTTCCT
TCTTGGCCTTCTTGACGTCGATTACCACAGCCAGCTTCTCCCCTCCCTTT
CGCTGCTGCTGCTGTTTGAGTGGAACAATCTCTCTCTGGGCCTTGCGCTT
CTTGCTGTCCTTTCCGGGTGCAGCATGAGAATCCTCCTCCTCCTCTTCCT
CCTCCCCAGCCTCTTTTTCTTTATACTCCTCATTTTTGGCCTTACCTTCC
TCTTCCTTACTTCCAGCCTCATCTTTATCTTCATCTTCATCCATCCAATC
GTCCTCCTCCTCCTCCTCCTCCTCCTCCTC back to topCoding sequence (CDS) from alignment at chr17:508849..511178- >NO17G01760.1 ID=NO17G01760.1|Name=NO17G01760.1|organism=Nannochloropsis oceanica|type=CDS|length=864bp|location=Sequence derived from alignment at chr17:508849..511178- (Nannochloropsis oceanica)
ATGAAATCCTACTCGACCCTCTTGGGGGCCGCGGCCTTGCTTGCCCTCCA
AGTGATGCCAACCCAAGGGTTCGTGGGGCCCCTGAAGCCAGCCACCTCAA
CAACCAAGCTCTCCGTCTCCTTCCTTGGGAATGGTAGCTCCAAGAAGGGT
TCTGCCAGCAAGGGTGTGCTAGTTGTCGGTGCCACAGGGAAAACGGGAAA
GCGTGTGGTAGAAATTTTGCAAAGGAAGGGAACGAAGGTGGCCGCCGGGG
TACGGGATTTGGCCAAGGGTGAAGAAACCTTGGGCAGGCCCAGTGGAAAG
CTTTCCTTCCTCGAGGTCGATGTCGTCGCGGATTCGCCTGCGTCCCTGAT
CGAGAAGGTCGCTGGGTACTCTGCGGTGATATGTGCGACAGGCTACTCGC
CTTCCGGTCCCATTGATATTTTGGGCCCCTACAAAGTTGACAATAAAGGC
ACTATCAAGCTTGCCGAGGCGCTCGTTGCCGCAGGCGTCCCCAAAATGGT
GCTTGTCTCGTCTTTGCTTACAAATGGTTGGGAGGCTGGGCAAGGCTTGA
ACAAGAACTTCATAATCCTCAATCTCTTCGGAGGTGTATTGGCTGCGAAG
AACAATGCGGAGCGAAAGATAATGAAGTCGACACTTGACTACACCATAGT
TCGACCTGGTGGGTTAAAGGAAGCTGCTCCAGAAGGCCAAATCAGATACG
GCAAGGCAGATACCATCTTTGGGGGTTCTATTTCTCGTTATTCGGTTGCA
GAAGTGTGCGTGGCCGCTTTGACCTCCAAATCTGCGTCCAATAAAGTGGT
AGAGATTGTTGCGGAACCAGACGCAGCCAAGCTAAGTATCGAGCAAGGGT
TCGCCTCAGTCTAG back to top
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