NO17G01660.1, NO17G01660.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO17G01660.1
Unique NameNO17G01660.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1623
Alignment locationchr17:486528..488274 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr17genomechr17:486528..488274 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO17G01660.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO17G01660NO17G01660Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO17G01660.1NO17G01660.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO17G01660.1.cds1NO17G01660.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO17G01660.1.cds2NO17G01660.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO17G01660.1 ID=NO17G01660.1|Name=NO17G01660.1|organism=Nannochloropsis oceanica|type=mRNA|length=1623bp
ATGTCCTCGTCAACCGAGACTGCTAAAGCCACACGACTGGATGTGGCCGC
GCGGAAGGAGCTGCAGATAACACTGGAGTTCCAATGTGTAAAGTGTTGTC
TATCCAAGCGACTGGCGCCAGTCGAGGAACAGGTGGCTCTTCCGAAGCTG
GATCAAAGCTTCGTCACCGCCTGCTTCACTCCTGGGCTGGAGGTTCGACC
CGGCCGAGCGTGGAACGAGGGATACCGCGGGGTCATCAAGGAGGTGTTTC
AGGATAAATTTACCAATTATCCGTTCATCCACCGTAGCCCGGGCGACTAC
CAATCCATCACCGTGGTGGCACAGCTATACATCACAAATATAACAGCGTC
GACATGGACCCCGTTTGTGGGGAGACAACTCGATTACGTGCGATTCTGGC
TACGAGAGCATGGATTGGAGTCCCCGGACGTTTCAGCAAAGCGTGTCCAA
TGCCTCATCAATGGCTGGATTACACCGCGCACCGACAACCAGGCAGGCGC
TGGAGGAGGAGGAACAGGAGGAGGAGGAGGAGGAGGAGCTCTAAAAGTGA
CAGCAACTGCAAGAGCGGGAGCATCAGCCACGGCAGCAAGCACAGCAGCA
ACAGCAGCAGCGGCACGAGCAGCAGCAAGAGTGGCAGCAGCTAGAGCAAG
AGAAGAGGCACGAGCACGAGCATCGGCAGGAGGGAGGTGTGGGAAGGGGG
GGGGAGGTGGTGGACGTCCTGTGGGGCAGATCCCGGATGAGGTCCAGGAT
TTCATCAACGAGGAACGGCGGCTTCTTAGGCTGGAGGGTTCCACCCGTTT
GGACGTGAATGAGAAGACCCCAGTGGAAGGGCTCCTCCTCCCGTATCTGT
ACCACATTTTGTACCAGTATCACCAAATGCATCCGGCGGTACTGGCGGTA
CAAGAAGGGATGGGGGACAAACCTGAGATGCAGGCCGAGCACGGAGGGAA
TCCTGGCTATCGGGCGTTTACCATCGCTCCAATCTGCAGTATCAAGCGCC
ATTTCATGACGCTCGATACCAGAGCTCTTGGTGATCTGCTGAAGAACGTG
ATGCGACGCAGACCCACCGCGATGACCAAGGAGGCATGGAGCGAAGCATG
CCCCGATTGGTTGAGGCGACTGGGAGGGATGAGCCCTAAAAGGTTTTGCC
GGGATGCGGTTTCGGTGAAGGAGATGTGGGACGAGACTTTCCGGGTGGGG
GGCCTACGAAACCAGCGGGTGTTTCACAATCGGGTTTCCACGGATGGTGT
CTCGGTGTCGGTCTTCTTTCACGTGGCGAAGGAGAGACTGAAGAGGGAGA
AAGCGGAGAGGGTCAGAGTGGAGAAGGAGGACGAGGAGAAGGAGATGCTG
GAACGTCAGCAGGGGCAGGAAAACCTGCAGCCAGTCAGAGAGCGACGCAT
TGTCGCGATCGATCCCGGTCGCGTCAACCTGGTCACGGCGTTGGACTCGC
AGACTGGTAAGATCAAGACCTTGACGCGTCGTGCGTACTACGGAAAGCGG
CGGATCAACGAGTGCAAGAGAAAGTTTAGCTTTTGGGAGGACGCACTCGG
TGACATCAATGCCGCCTTTTCGAGGACCACGATGAAGACTGTCCCGACTT
GCGTAGCGCTTACAGGGAGCTGA
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protein sequence of NO17G01660.1

>NO17G01660.1-protein ID=NO17G01660.1-protein|Name=NO17G01660.1|organism=Nannochloropsis oceanica|type=polypeptide|length=541bp
MSSSTETAKATRLDVAARKELQITLEFQCVKCCLSKRLAPVEEQVALPKL
DQSFVTACFTPGLEVRPGRAWNEGYRGVIKEVFQDKFTNYPFIHRSPGDY
QSITVVAQLYITNITASTWTPFVGRQLDYVRFWLREHGLESPDVSAKRVQ
CLINGWITPRTDNQAGAGGGGTGGGGGGGALKVTATARAGASATAASTAA
TAAAARAAARVAAARAREEARARASAGGRCGKGGGGGGRPVGQIPDEVQD
FINEERRLLRLEGSTRLDVNEKTPVEGLLLPYLYHILYQYHQMHPAVLAV
QEGMGDKPEMQAEHGGNPGYRAFTIAPICSIKRHFMTLDTRALGDLLKNV
MRRRPTAMTKEAWSEACPDWLRRLGGMSPKRFCRDAVSVKEMWDETFRVG
GLRNQRVFHNRVSTDGVSVSVFFHVAKERLKREKAERVRVEKEDEEKEML
ERQQGQENLQPVRERRIVAIDPGRVNLVTALDSQTGKIKTLTRRAYYGKR
RINECKRKFSFWEDALGDINAAFSRTTMKTVPTCVALTGS*
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mRNA from alignment at chr17:486528..488274+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO17G01660.1 ID=NO17G01660.1|Name=NO17G01660.1|organism=Nannochloropsis oceanica|type=mRNA|length=1747bp|location=Sequence derived from alignment at chr17:486528..488274+ (Nannochloropsis oceanica)
ATGTCCTCGTCAACCGAGACTGCTAAAGCCACACGACTGGATGTGGCCGC
GCGGAAGGAGCTGCAGATAACACTGGAGTTCCAATGTGTAAAGTGTTGTC
TATCCAAGCGACTGGCGCCAGGTTGGCATCCGACAGTGAAAACTGTCCTG
CTAGAAACCCTGGAGCGACAGATTCGGAGCACTTCCGAGATTGTCGTGCG
AGGATCACTCCTGGTGAATGTTGCATTGGTACCTCAGTCGTCCAGTCGAG
GAACAGGTGGCTCTTCCGAAGCTGGATCAAAGCTTCGTCACCGCCTGCTT
CACTCCTGGGCTGGAGGTTCGACCCGGCCGAGCGTGGAACGAGGGATACC
GCGGGGTCATCAAGGAGGTGTTTCAGGATAAATTTACCAATTATCCGTTC
ATCCACCGTAGCCCGGGCGACTACCAATCCATCACCGTGGTGGCACAGCT
ATACATCACAAATATAACAGCGTCGACATGGACCCCGTTTGTGGGGAGAC
AACTCGATTACGTGCGATTCTGGCTACGAGAGCATGGATTGGAGTCCCCG
GACGTTTCAGCAAAGCGTGTCCAATGCCTCATCAATGGCTGGATTACACC
GCGCACCGACAACCAGGCAGGCGCTGGAGGAGGAGGAACAGGAGGAGGAG
GAGGAGGAGGAGCTCTAAAAGTGACAGCAACTGCAAGAGCGGGAGCATCA
GCCACGGCAGCAAGCACAGCAGCAACAGCAGCAGCGGCACGAGCAGCAGC
AAGAGTGGCAGCAGCTAGAGCAAGAGAAGAGGCACGAGCACGAGCATCGG
CAGGAGGGAGGTGTGGGAAGGGGGGGGGAGGTGGTGGACGTCCTGTGGGG
CAGATCCCGGATGAGGTCCAGGATTTCATCAACGAGGAACGGCGGCTTCT
TAGGCTGGAGGGTTCCACCCGTTTGGACGTGAATGAGAAGACCCCAGTGG
AAGGGCTCCTCCTCCCGTATCTGTACCACATTTTGTACCAGTATCACCAA
ATGCATCCGGCGGTACTGGCGGTACAAGAAGGGATGGGGGACAAACCTGA
GATGCAGGCCGAGCACGGAGGGAATCCTGGCTATCGGGCGTTTACCATCG
CTCCAATCTGCAGTATCAAGCGCCATTTCATGACGCTCGATACCAGAGCT
CTTGGTGATCTGCTGAAGAACGTGATGCGACGCAGACCCACCGCGATGAC
CAAGGAGGCATGGAGCGAAGCATGCCCCGATTGGTTGAGGCGACTGGGAG
GGATGAGCCCTAAAAGGTTTTGCCGGGATGCGGTTTCGGTGAAGGAGATG
TGGGACGAGACTTTCCGGGTGGGGGGCCTACGAAACCAGCGGGTGTTTCA
CAATCGGGTTTCCACGGATGGTGTCTCGGTGTCGGTCTTCTTTCACGTGG
CGAAGGAGAGACTGAAGAGGGAGAAAGCGGAGAGGGTCAGAGTGGAGAAG
GAGGACGAGGAGAAGGAGATGCTGGAACGTCAGCAGGGGCAGGAAAACCT
GCAGCCAGTCAGAGAGCGACGCATTGTCGCGATCGATCCCGGTCGCGTCA
ACCTGGTCACGGCGTTGGACTCGCAGACTGGTAAGATCAAGACCTTGACG
CGTCGTGCGTACTACGGAAAGCGGCGGATCAACGAGTGCAAGAGAAAGTT
TAGCTTTTGGGAGGACGCACTCGGTGACATCAATGCCGCCTTTTCGAGGA
CCACGATGAAGACTGTCCCGACTTGCGTAGCGCTTACAGGGAGCTGA
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Coding sequence (CDS) from alignment at chr17:486528..488274+

>NO17G01660.1 ID=NO17G01660.1|Name=NO17G01660.1|organism=Nannochloropsis oceanica|type=CDS|length=1623bp|location=Sequence derived from alignment at chr17:486528..488274+ (Nannochloropsis oceanica)
ATGTCCTCGTCAACCGAGACTGCTAAAGCCACACGACTGGATGTGGCCGC
GCGGAAGGAGCTGCAGATAACACTGGAGTTCCAATGTGTAAAGTGTTGTC
TATCCAAGCGACTGGCGCCAGTCGAGGAACAGGTGGCTCTTCCGAAGCTG
GATCAAAGCTTCGTCACCGCCTGCTTCACTCCTGGGCTGGAGGTTCGACC
CGGCCGAGCGTGGAACGAGGGATACCGCGGGGTCATCAAGGAGGTGTTTC
AGGATAAATTTACCAATTATCCGTTCATCCACCGTAGCCCGGGCGACTAC
CAATCCATCACCGTGGTGGCACAGCTATACATCACAAATATAACAGCGTC
GACATGGACCCCGTTTGTGGGGAGACAACTCGATTACGTGCGATTCTGGC
TACGAGAGCATGGATTGGAGTCCCCGGACGTTTCAGCAAAGCGTGTCCAA
TGCCTCATCAATGGCTGGATTACACCGCGCACCGACAACCAGGCAGGCGC
TGGAGGAGGAGGAACAGGAGGAGGAGGAGGAGGAGGAGCTCTAAAAGTGA
CAGCAACTGCAAGAGCGGGAGCATCAGCCACGGCAGCAAGCACAGCAGCA
ACAGCAGCAGCGGCACGAGCAGCAGCAAGAGTGGCAGCAGCTAGAGCAAG
AGAAGAGGCACGAGCACGAGCATCGGCAGGAGGGAGGTGTGGGAAGGGGG
GGGGAGGTGGTGGACGTCCTGTGGGGCAGATCCCGGATGAGGTCCAGGAT
TTCATCAACGAGGAACGGCGGCTTCTTAGGCTGGAGGGTTCCACCCGTTT
GGACGTGAATGAGAAGACCCCAGTGGAAGGGCTCCTCCTCCCGTATCTGT
ACCACATTTTGTACCAGTATCACCAAATGCATCCGGCGGTACTGGCGGTA
CAAGAAGGGATGGGGGACAAACCTGAGATGCAGGCCGAGCACGGAGGGAA
TCCTGGCTATCGGGCGTTTACCATCGCTCCAATCTGCAGTATCAAGCGCC
ATTTCATGACGCTCGATACCAGAGCTCTTGGTGATCTGCTGAAGAACGTG
ATGCGACGCAGACCCACCGCGATGACCAAGGAGGCATGGAGCGAAGCATG
CCCCGATTGGTTGAGGCGACTGGGAGGGATGAGCCCTAAAAGGTTTTGCC
GGGATGCGGTTTCGGTGAAGGAGATGTGGGACGAGACTTTCCGGGTGGGG
GGCCTACGAAACCAGCGGGTGTTTCACAATCGGGTTTCCACGGATGGTGT
CTCGGTGTCGGTCTTCTTTCACGTGGCGAAGGAGAGACTGAAGAGGGAGA
AAGCGGAGAGGGTCAGAGTGGAGAAGGAGGACGAGGAGAAGGAGATGCTG
GAACGTCAGCAGGGGCAGGAAAACCTGCAGCCAGTCAGAGAGCGACGCAT
TGTCGCGATCGATCCCGGTCGCGTCAACCTGGTCACGGCGTTGGACTCGC
AGACTGGTAAGATCAAGACCTTGACGCGTCGTGCGTACTACGGAAAGCGG
CGGATCAACGAGTGCAAGAGAAAGTTTAGCTTTTGGGAGGACGCACTCGG
TGACATCAATGCCGCCTTTTCGAGGACCACGATGAAGACTGTCCCGACTT
GCGTAGCGCTTACAGGGAGCTGA
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Synonyms
Publications