NO17G01440.1, NO17G01440.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO17G01440.1
Unique NameNO17G01440.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length999
Alignment locationchr17:437891..438889 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr17genomechr17:437891..438889 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO17G01440.1 vs.
Match: XP_005856017.1 (aspartate carbamoyltransferase catalytic subunit, partial [Nannochloropsis gaditana CCMP526]; XP_005856320.1 aspartate carbamoyltransferase catalytic subunit, partial [Nannochloropsis gaditana CCMP526]; EKU20043.1 aspartate carbamoyltransferase catalytic subunit, partial [Nannochloropsis gaditana CCMP526]; EKU20344.1 aspartate carbamoyltransferase catalytic subunit, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 518.1 bits (1333), Expect = 2.100e-143
Identity = 255/312 (81.73%), Postives = 283/312 (90.71%), Query Frame = 0 
Query:   13 TEDPRSWVGQHFLSVTQLSLPALELFLREAEAMKALVAARGGDRRMQGRILGSIFFEPSTRTTSSFQAAFQRLGGSCLHVNESSSSAQKGETLSDTVRSMACYCDLVVVRHPVKGSVRSAAGTCPKPLLNAGDGTGEHPTQSLLDLLTVKLELGEITGKTVALVGDLKHGRTAHSLARLLCLFSGVEIIYVSPESLRMPEEVKEYVGSRGVAQREAFTLDAEVLAETDVLYMTRVQKERFATSADYDEVKDMFRITPQVMKQGKSTLVLMHPLPRVGEIDEEVDRDPRAAYFRQMENGMYARMALVALIVGV 325
            + DP+SWVGQHFLS TQ++LPALEL LREAEAMK LV   GGD R+QGR+LGSIFFEPSTRTTSSFQAAFQRLGGSC+HVNESSSSAQKGETLSDTVRSMACYCD+VV+RHPV+GSVR AA TCPKPLLNAGDGTGEHPTQSLLDLLTVKLE+GEI  KTVA VGDLKHGRTAHS ARLLCLFSG+ +IYVSP+SL MPEEVK+YV SRG+ Q E FTLD +VLA  DVLYMTRVQKERF  +ADY++VKD+FR+TPQ M+  KS+LVLMHPLPRVGEID+ VD+DPRAAYFRQMENGMYARMAL+ALI+GV
Sbjct:   18 SSDPQSWVGQHFLSATQITLPALELLLREAEAMKELVKVHGGDLRLQGRVLGSIFFEPSTRTTSSFQAAFQRLGGSCIHVNESSSSAQKGETLSDTVRSMACYCDVVVLRHPVQGSVREAAMTCPKPLLNAGDGTGEHPTQSLLDLLTVKLEVGEIRNKTVAFVGDLKHGRTAHSFARLLCLFSGIRLIYVSPQSLAMPEEVKKYVDSRGIQQHEYFTLDEDVLATMDVLYMTRVQKERFPRAADYEKVKDIFRVTPQTMQLCKSSLVLMHPLPRVGEIDDRVDQDPRAAYFRQMENGMYARMALIALIMGV 329
The following BLAST results are available for this feature:
BLAST of NO17G01440.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005856017.12.100e-14381.73aspartate carbamoyltransferase catalytic subunit, ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO17G01440NO17G01440Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO17G01440.1NO17G01440.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO17G01440.1.cds1NO17G01440.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO17G01440.1 ID=NO17G01440.1|Name=NO17G01440.1|organism=Nannochloropsis oceanica|type=mRNA|length=999bp
ATGGCGATGGAGGGCGAGCTGACACCGGCGGCCTTGACGGAGGACCCTCG
TTCATGGGTCGGTCAACATTTTCTATCCGTCACGCAGCTTTCCTTGCCCG
CTTTGGAACTATTCTTGCGGGAGGCTGAAGCCATGAAGGCGCTTGTGGCC
GCCCGGGGCGGGGACCGAAGGATGCAAGGGCGCATCCTCGGCAGTATTTT
TTTCGAACCGTCGACGCGAACCACGTCATCCTTTCAAGCGGCCTTCCAGC
GTTTGGGGGGCAGTTGCTTGCATGTGAACGAGTCATCCTCGAGCGCGCAG
AAGGGCGAGACACTGAGCGACACTGTCCGGTCCATGGCCTGCTACTGCGA
CCTGGTGGTGGTGCGCCATCCAGTTAAGGGAAGCGTGCGCTCGGCGGCAG
GCACCTGTCCCAAACCTCTGTTGAACGCGGGGGACGGGACGGGTGAGCAC
CCCACGCAGTCTCTTCTGGACCTGCTGACTGTGAAGCTGGAGCTTGGAGA
AATCACGGGCAAGACTGTGGCGCTGGTAGGGGACCTAAAGCATGGACGCA
CGGCACATTCCTTGGCACGATTGCTCTGCTTATTCAGTGGTGTCGAGATA
ATATATGTGAGCCCTGAGTCGTTGAGAATGCCGGAGGAAGTGAAGGAGTA
CGTGGGCAGCCGCGGCGTGGCCCAGCGTGAGGCTTTTACGCTGGATGCCG
AGGTGTTGGCGGAGACGGATGTGCTTTACATGACGCGCGTGCAGAAGGAG
CGGTTTGCAACGAGTGCTGATTATGATGAGGTGAAGGACATGTTTAGGAT
TACCCCACAAGTGATGAAGCAGGGCAAGAGCACGTTGGTGCTGATGCATC
CTTTACCACGCGTGGGTGAGATCGACGAGGAGGTAGATCGCGACCCGCGC
GCAGCTTACTTCAGGCAGATGGAGAATGGGATGTATGCGCGTATGGCATT
GGTGGCATTGATTGTGGGGGTGCCCACGTTTCCGGCAGATTCTTCTTAA
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protein sequence of NO17G01440.1

>NO17G01440.1-protein ID=NO17G01440.1-protein|Name=NO17G01440.1|organism=Nannochloropsis oceanica|type=polypeptide|length=333bp
MAMEGELTPAALTEDPRSWVGQHFLSVTQLSLPALELFLREAEAMKALVA
ARGGDRRMQGRILGSIFFEPSTRTTSSFQAAFQRLGGSCLHVNESSSSAQ
KGETLSDTVRSMACYCDLVVVRHPVKGSVRSAAGTCPKPLLNAGDGTGEH
PTQSLLDLLTVKLELGEITGKTVALVGDLKHGRTAHSLARLLCLFSGVEI
IYVSPESLRMPEEVKEYVGSRGVAQREAFTLDAEVLAETDVLYMTRVQKE
RFATSADYDEVKDMFRITPQVMKQGKSTLVLMHPLPRVGEIDEEVDRDPR
AAYFRQMENGMYARMALVALIVGVPTFPADSS*
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mRNA from alignment at chr17:437891..438889-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO17G01440.1 ID=NO17G01440.1|Name=NO17G01440.1|organism=Nannochloropsis oceanica|type=mRNA|length=999bp|location=Sequence derived from alignment at chr17:437891..438889- (Nannochloropsis oceanica)
ATGGCGATGGAGGGCGAGCTGACACCGGCGGCCTTGACGGAGGACCCTCG
TTCATGGGTCGGTCAACATTTTCTATCCGTCACGCAGCTTTCCTTGCCCG
CTTTGGAACTATTCTTGCGGGAGGCTGAAGCCATGAAGGCGCTTGTGGCC
GCCCGGGGCGGGGACCGAAGGATGCAAGGGCGCATCCTCGGCAGTATTTT
TTTCGAACCGTCGACGCGAACCACGTCATCCTTTCAAGCGGCCTTCCAGC
GTTTGGGGGGCAGTTGCTTGCATGTGAACGAGTCATCCTCGAGCGCGCAG
AAGGGCGAGACACTGAGCGACACTGTCCGGTCCATGGCCTGCTACTGCGA
CCTGGTGGTGGTGCGCCATCCAGTTAAGGGAAGCGTGCGCTCGGCGGCAG
GCACCTGTCCCAAACCTCTGTTGAACGCGGGGGACGGGACGGGTGAGCAC
CCCACGCAGTCTCTTCTGGACCTGCTGACTGTGAAGCTGGAGCTTGGAGA
AATCACGGGCAAGACTGTGGCGCTGGTAGGGGACCTAAAGCATGGACGCA
CGGCACATTCCTTGGCACGATTGCTCTGCTTATTCAGTGGTGTCGAGATA
ATATATGTGAGCCCTGAGTCGTTGAGAATGCCGGAGGAAGTGAAGGAGTA
CGTGGGCAGCCGCGGCGTGGCCCAGCGTGAGGCTTTTACGCTGGATGCCG
AGGTGTTGGCGGAGACGGATGTGCTTTACATGACGCGCGTGCAGAAGGAG
CGGTTTGCAACGAGTGCTGATTATGATGAGGTGAAGGACATGTTTAGGAT
TACCCCACAAGTGATGAAGCAGGGCAAGAGCACGTTGGTGCTGATGCATC
CTTTACCACGCGTGGGTGAGATCGACGAGGAGGTAGATCGCGACCCGCGC
GCAGCTTACTTCAGGCAGATGGAGAATGGGATGTATGCGCGTATGGCATT
GGTGGCATTGATTGTGGGGGTGCCCACGTTTCCGGCAGATTCTTCTTAA
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Coding sequence (CDS) from alignment at chr17:437891..438889-

>NO17G01440.1 ID=NO17G01440.1|Name=NO17G01440.1|organism=Nannochloropsis oceanica|type=CDS|length=999bp|location=Sequence derived from alignment at chr17:437891..438889- (Nannochloropsis oceanica)
ATGGCGATGGAGGGCGAGCTGACACCGGCGGCCTTGACGGAGGACCCTCG
TTCATGGGTCGGTCAACATTTTCTATCCGTCACGCAGCTTTCCTTGCCCG
CTTTGGAACTATTCTTGCGGGAGGCTGAAGCCATGAAGGCGCTTGTGGCC
GCCCGGGGCGGGGACCGAAGGATGCAAGGGCGCATCCTCGGCAGTATTTT
TTTCGAACCGTCGACGCGAACCACGTCATCCTTTCAAGCGGCCTTCCAGC
GTTTGGGGGGCAGTTGCTTGCATGTGAACGAGTCATCCTCGAGCGCGCAG
AAGGGCGAGACACTGAGCGACACTGTCCGGTCCATGGCCTGCTACTGCGA
CCTGGTGGTGGTGCGCCATCCAGTTAAGGGAAGCGTGCGCTCGGCGGCAG
GCACCTGTCCCAAACCTCTGTTGAACGCGGGGGACGGGACGGGTGAGCAC
CCCACGCAGTCTCTTCTGGACCTGCTGACTGTGAAGCTGGAGCTTGGAGA
AATCACGGGCAAGACTGTGGCGCTGGTAGGGGACCTAAAGCATGGACGCA
CGGCACATTCCTTGGCACGATTGCTCTGCTTATTCAGTGGTGTCGAGATA
ATATATGTGAGCCCTGAGTCGTTGAGAATGCCGGAGGAAGTGAAGGAGTA
CGTGGGCAGCCGCGGCGTGGCCCAGCGTGAGGCTTTTACGCTGGATGCCG
AGGTGTTGGCGGAGACGGATGTGCTTTACATGACGCGCGTGCAGAAGGAG
CGGTTTGCAACGAGTGCTGATTATGATGAGGTGAAGGACATGTTTAGGAT
TACCCCACAAGTGATGAAGCAGGGCAAGAGCACGTTGGTGCTGATGCATC
CTTTACCACGCGTGGGTGAGATCGACGAGGAGGTAGATCGCGACCCGCGC
GCAGCTTACTTCAGGCAGATGGAGAATGGGATGTATGCGCGTATGGCATT
GGTGGCATTGATTGTGGGGGTGCCCACGTTTCCGGCAGATTCTTCTTAA
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Synonyms
Publications