Alignments
The following features are aligned
Aligned Feature Feature Type Alignment Location
chr17 genome chr17:416749..421111 +
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO17G01360.1 vs.
Match: EWM24248.1 (pleckstrin domain-containing protein [Nannochloropsis gaditana])
HSP 1 Score: 733.4 bits (1892), Expect = 1.000e-207
Identity = 448/833 (53.78%), Postives = 538/833 (64.59%), Query Frame = 0
Query: 20 DGSWGPVPSSSPP--PSSPSNLVGVSTSLPLTPRSRTTRRDQVARELMDSERTFVEQMTVLTKVFINPLRWWKLEITQGRESMHPPLPDALLQEIFGNVEQLLVFNAHVVEQFAELHCGNQAFGGFFKKAAPFFKMYSSYVSNYDRAMETLLHLIETRLDFAAFVRACELQEGCKGLNLRAYLIMPVQRIPRYKLLLTELLKHTSEDHPDYEDLEAAVKLVSGVVGAINEDIKRQERRFKVIEIQEQWDTVLVTASRKFEKEGPLIKVCRKGPKTREFVLFNDLLIYGVRKMASSEKRYLHRKLDLGELFVVDSGEAEKTFVLATRSKSFVVQCVDMAEKKSWMAAFTCCFAEMEKTVLYGKNRTINKDHRLTHVGLWMVREGEMVRESYLMPPDMPKDKTYGFLSFQDLRLIVDPQEPDRSSMGKRVLSRILRRGASLSRFNFKVQSGNPVPCEHVSPDDIHGAVDSDDDDEVSTYSDALSPCSSASASPYDFDSADTRWGGIGVHGFPVTSTRT-NITTTPPLTDDATAT-----DPSSSTGVAMTRTGMRRASLDTVAPGALNDVGFQTASGFIDGRQSSKWSGILSGLRPQGANSTSPKAVPDLHQEKELAALERSLGLMGFRNEAKNGG--HTNDSKPPQARLSPP--------------------PLVDTAAS--APTGATAVP------------STNTIVGGGVA-ISSNSSSNASAPGSLH-GGRP-----------------------PKPISPPRSP----LSPPISPRLIHCVPSEQHHISPNALFSPAASFSSESSPFTSYANSNTINCSGSGSSSSSSN 780
+ ++ P P+ P PS+P G S +LPLTPRSR+ RRDQVARE++DSE++FVEQM VLTK FI PLR+W EI ES HPPLP++ LQEIF N+EQLL+FN HVVEQF+EL G+QAFGGFFKKAAPFFKMYSSYVSNYDRAMETLL+LIETRLDFAAFVRACELQEGCKGLNLRAYLIMP+QRIPRYKLLLTELLKHT E+HPD+EDLEAAVKLVSGVVGAINEDIKRQE+RFKVIEIQE+WDT LVTASRKFEKEG L+KVCRKGPK R+FVL NDLLIYG RK+ASSEK LHRK+DL ELFVVDSG AEKTF+LATR+KSFVVQC DM++KK+WMAAF CFAEMEKTVLYGK R +NKD RLTHVGLWMVR+GEM+RESYL+PP + ++K YGFL F+DLRL+VDPQ P R SMGKRVLSRI+RRGASLS+FNFKVQS +PVPCEH++PD+++ +SD+DDE ST++DALSP SSAS SP + +D R G+ + T +R+ + + PL D T D S + G+R + +PG + D Q S ++ G+ + + N T +AA + RN GG T + P LS P P + ++AS AP +T+V S T+ G A +SS S S G H GG +P+ PRSP LSPP P S +FS S P + +A +CS S+ + N
Sbjct: 5 EDTYPPTPTRVPSWSPSNPPVTDGAS-NLPLTPRSRSRRRDQVAREILDSEKSFVEQMMVLTKTFIKPLRYWNAEIAGNAESTHPPLPNSFLQEIFSNIEQLLIFNGHVVEQFSELQRGSQAFGGFFKKAAPFFKMYSSYVSNYDRAMETLLNLIETRLDFAAFVRACELQEGCKGLNLRAYLIMPIQRIPRYKLLLTELLKHTPEEHPDFEDLEAAVKLVSGVVGAINEDIKRQEKRFKVIEIQERWDTNLVTASRKFEKEGMLVKVCRKGPKARQFVLLNDLLIYGARKIASSEKCTLHRKVDLSELFVVDSGNAEKTFILATRAKSFVVQCADMSDKKTWMAAFAACFAEMEKTVLYGKGRVLNKDQRLTHVGLWMVRDGEMLRESYLLPPQLQENKMYGFLDFRDLRLVVDPQGPSRGSMGKRVLSRIMRRGASLSQFNFKVQSEHPVPCEHITPDEVYEPGESDEDDE-STFADALSPFSSASVSPQNLGLSDAR-TNYGLDAYSATRSRSVDAVPSAPLNDIGFQTTSGFIDGRQSGKWSGILHGLRPKGASSASPGPVAD--HQQRSDMAALERTMGLMGLQAPYNQENGNETGESRPSPPPLSAVVAAPVGVKSVDVGRNVTLGGGVCPTKPTSPSHGHLSAPLSPRRAYEDLTRPAQEAVNLPFLPSSASSFAPYPSTSVSSLRQSSDSGGEHSAKTLAEGEAASLSSQSFWGGSTGGKNHIGGNTSTSEEARKCDAVPQSFRHHQVGGSRPVKAPRSPRQGSLSPPSLPARFESAKS-------------GGAFSRSSPPVSKFAPLPLPSCSALSSNRTPGN 819
The following BLAST results are available for this feature:
BLAST of NO17G01360.1 vs.
Analysis Date: 2017-10-25 (
Homology annotation for N. oceanica IMET1 )
Total hits: 1
500 1000 1500 2000 2500 3000 3500 Expect = 1.00e-207 / Id = 53.78 Sequence EWM24248.1
Match Name E-value Identity Description
EWM24248.1 1.000e-207 53.78 pleckstrin domain-containing protein [Nannochlorop... [more]
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Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence
>NO17G01360.1 ID=NO17G01360.1|Name=NO17G01360.1|organism=Nannochloropsis oceanica|type=mRNA|length=3773bp back to top protein sequence of NO17G01360.1
>NO17G01360.1-protein ID=NO17G01360.1-protein|Name=NO17G01360.1|organism=Nannochloropsis oceanica|type=polypeptide|length=1090bp back to top mRNA from alignment at chr17:416749..421111+
Legend: polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO17G01360.1 ID=NO17G01360.1|Name=NO17G01360.1|organism=Nannochloropsis oceanica|type=mRNA|length=4363bp|location=Sequence derived from alignment at chr17:416749..421111+ (Nannochloropsis oceanica)ATGGACCACCCCAGCAG
AAACAGCAGCATAACGTCCATACCGAACAACACTGACAAAGATGGCAGCT
GGGGTCCTGTGCCCAGCTCAAGCCCCCCGCCATCGTCTCCCTCAAACCTA
GTAGGCGTGTCGACCTCCTTGCCTCTAACACCCCGCTCTCGGACCACGCG
CCGCGACCAAGTCGCACGCGAGCTCATGGACTCAGAAAGGACTTTTGTGG
AGCAAATGACGGTACTGACCAAGGTCTTCATCAATCCCTTGCGATGGTGG
AAATTGGAGATCACACAAGGCAGGGAATCGATGCACCCGCCGCTGCCGGA
CGCGCTCCTTCAAGAAATTTTTGGCAATGTTGAGCAGCTGTTGGTTTTCA
ATGCGCATGTAGTGGAGCAATTTGCGGAGCTGCATTGTGGGAATCAGGCG
TTTGGGGGCTTCTTCAAGAAGGCGGCACCCTTTTTTAAGATGTATTCGAG
TTACGTCTCTAACTATGACAGAGCAATGGAGACATTGCTGCATTTGATTG
AGACCCGGCTCGATTTTGCAGCTTTTGTCCGAG GTACGTGTGTGTAGCGA
AGTGTTTCGAATCCTTTGACTGGCTGACTGGCGCAAGCGTTGATCTGTCT
CTCCGATCTCAAGCCTCTTTTGTTTTTCCTTCCCGGGCTGTGGCTATCCT
CTTATCCCATTACCCTTCCTCCTCCTCTCTCATTTCCTTCCACCCCCAGC
CTGCGAACTCCAGGAAGGTTGCAAGGGCCTAAATCTCCGGGCTTATCTCA
TCATGCCTGTGCAGAGAATACCACGCTACAAGCTCTTGCTCACGGAGCTG
CTTAAACACACGTCAGAGGACCACCCTGATTACGAG GTATATGGCACCTG
GAAGAGGGCGGTCAGCAAGAGCACGCAAGCTGCGCTTTTTTTAAAAAATG
TAGCACTGATATTTAAATAAAAACCTGCATTCACTTTACACAACATATAC
ATGTAGGACCTGGAGGCGGCCGTCAAGCTCGTGTCAGGCGTGGTAGGCGC
CATCAATGAAGACATAAAAAGGCAAGAGAGGCGGTTTAAGGTCATCGAGA
TTCAAGAGCAATGGGACACG GTATGTTTCAATATTTACTTTACAGAAGGG
ACTCCCTAACCTTCTCGCCTCCCCCCTTTGATCTTCTCCTTTTCACTCAC
TCATTATCCTCTCCCCTGTACCCTTTCCTTCCAGGTCCTTGTCACGGCTT
CCCGCAAATTCGAAAAGGAAGGGCCACTCATCAAGGTCTGTCGGAAAGGG
CCAAAAACGCGGGAATTCGTTCTCTTCAATGACCTCCTAATCTACGGCGT
CCGCAAAATGGCCTCCTCGGAAAAGCGCTATTTGCATAGGAAGCTTGATT
TGGGTGAGCTGTTCGTTGTGGATAGTGGGGAGGCAGAAAAGACCTTTGTT
TTGGCGACGCGTTCGAAGTCATTTGTTGTGCAATGTGTGGACATGGCCGA
AAAAAAGTCATGGATGGCGGCGTTTACTTGTTGTTTTGCCGAGATGGAGA
AGACGGTCTTGTATGGGAAGAATCGAACAATCAACAAAGACCATCGCTTG
ACCCATGTCGGCCTGTGGATGGTCAGGGAGGGGGAGATGGTGCGAGAATC
CTACCTTATGCCACCTGACATGCCCAAGGATAAAACGTATGGCTTCCTCA
GCTTCCAAGACCTCCGTCTGATTGTCGATCCTCAGGAGCCTGATCGTAGC
AGCATGGGCAAGCGTGTCCTTTCTCGTATCTTGCGGCGGGGGGCAAGCCT
TTCGCGGTTTAATTTTAAGGTCCAGAGTGGGAATCCGGTGCCATGCGAGC
ACGTCTCACCGGACGATATTCATGGAGCGGTTGATTCGGACGACGATGAC
GAAGTGTCGACTTATAGCGATGCCCTCTCCCCATGCAGCTCTGCGAGTGC
CTCCCCCTACGATTTTGATTCAGCGGATACGCGCTGGGGGGGCATTGGCG
TACACGGCTTTCCCGTCACAAGTACTAGGACGAATATTACTACTACTCCT
CCTCTTACTGATGATGCTACGGCGACGGATCCCAGCAGCAGTACGGGTGT
TGCGATGACGAGGACCGGGATGCGAAGGGCGAGCCTCGATACGGTGGCGC
CGGGCGCGCTCAATGACGTGGGGTTCCAGACCGCTTCGGGCTTTATCGAT
GGGAG GTAGGTTTGGCTGACGTGAATTTGGGGCTAGATTTAAATTGTACC
AACCCTGTTGTTTTATCTTCTCCATCTCCTGAATTCCCACCCTCCCTTTG
ATTGCAGACAGTGCTCCATTATCCTAACCCTCTCATTCCCGCCATCCGAT
TTCGCCCTTCTCTCTCTCCTTCCATCCGGACTCCCATCCATACAGACAAA
GCAGCAAATGGAGTGGCATCCTCAGCGGCCTCCGTCCCCAGGGCGCAAAC
TCCACCTCCCCCAAAGCTGTCCCAGACCTTCACCAGGAAAAGGAATTGGC
AGCTCTTGAACGGTCCTTAGGCTTGATGGGGTTCAGAAATGAGGCGAAGA
ACGGAGGGCACACAAACGACAGCAAGCCTCCGCAGGCTCGCCTCTCTCCA
CCTCCGCTCGTTGACACGGCCGCCTCGGCCCCTACAGGTGCCACTGCTGT
CCCAAGTACCAATACCATCGTCGGCGGTGGTGTGGCTATCAGCAGCAACA
GCAGCAGCAATGCCAGTGCCCCGGGATCATTACACGGGGGGCGTCCGCCT
AAACCGATTTCACCTCCTCGGAGCCCCTTGTCGCCTCCCATCTCTCCTCG
TCTGATCCATTGCGTCCCCTCAGAACAACACCATATCTCTCCTAATGCCT
TGTTCTCGCCGGCAGCATCGTTTTCCTCGGAATCGTCTCCCTTTACCTCC
TACGCAAACTCAAACACCATCAATTGCAGCGGCAGTGGCAGCAGCAGCAG
CAGCAGCAACAACAACAGACTTCCACATGGCGACTCGGCACGGACCAAGT
CACGTCCAAGCACAGGCAAGGGGGCTGGTAGGGGTGGGGGTGGCTGCAGC
AGCGGCAGCAGCAGAAGCAGCATGGGCAGTATCGTCGTATCTCACGAGAA
GTTCGGAGGTTCTGTTGCACCTGCTGCTGCTGCTGCTGCTAGTGCTAGCT
GGAGCAATGGAGCCTTATTAGGGCCCGATGCAGAGTCACCCGGTGGCAGC
AGCAGCAGGTCTCGCAGGAGCTCAACGGGAGGTCCACGTCCGGCCAAGGC
CCCCCGCTCTCCTCGCTTCGGTTCGCTCTCTCCCCCCGCCCGCTCCGAGC
ACCTCAACAGTGACAGTCCACCTGACGTCTTCTCTCGTTCATCCTCTCCT
TTGCCTCATCCTGATCTGTCACTACCCCCACCCTCATTCAGCTCCACAGC
CTCCTCCTACCGAGTACCTGGGAACGAGTATGTAGTTGTTCTCCCAGTTT
CTGATTTAGGTTTGGGCATTTTCTTGAGGGATGAGAATGGCAAGGTTTTA
GTGGGTGGATTTCGTTCCCCAAAGAACTTGTCAGGCGCTGGTGTTGGCGG
GGTTGGGGGAGCAGGGGGTGGGGGAGGAGGTGGGGGGGGTCATGGTGTGC
ATGCAATGAACCCATCCATGCGCGCGGGTATCAGGTTGGGAGATTCGTTG
CTCAAAGTAAATGGTACTGTTGTTCATTCGGTGAGTCACACGATTGCTGT
GCTCGGGGAGTCAAGGATGGAAAAGGTGATTGCCCTGACCTTGCGGCGAG
GCACTGGCGTCGGGGAGGGGTGGCCGGGAAGGACTGGGAAAGTCTCTGCG
GGGGCGGGAGCGCGCGTCCTTTCTCATTCGCCCCCCAAGCCTCAGAGCAA
GATTTTGCGAATTCATCGGGATAGAGGGACAGGAACAAAGTAG back to top Coding sequence (CDS) from alignment at chr17:416749..421111+
>NO17G01360.1 ID=NO17G01360.1|Name=NO17G01360.1|organism=Nannochloropsis oceanica|type=CDS|length=3270bp|location=Sequence derived from alignment at chr17:416749..421111+ (Nannochloropsis oceanica) back to top