NO17G01340.1, NO17G01340.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO17G01340.1
Unique NameNO17G01340.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length954
Alignment locationchr17:413208..414385 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr17genomechr17:413208..414385 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO17G01340.1 vs.
Match: EWM24240.1 (hypothetical protein Naga_100020g68 [Nannochloropsis gaditana])

HSP 1 Score: 415.6 bits (1067), Expect = 1.400e-112
Identity = 204/290 (70.34%), Postives = 240/290 (82.76%), Query Frame = 0 
Query:   29 LAFFGNWGKPFVPKVPSAAPAPAAAAAPA-KKLVDYSPRLPKLYGGWFDNTLVDQASAAITAALKDGIQTSEVLFPPLPNMEEREFGTSLNMKYNRAVATRLGGPDNILRKQSVAYANVDLASRIATKLRKRTLLLTYDNAVDSSIIKLSKQAEIMRISSADLKACITANDVLLALSPGVGSHWTKAAGLQTEAPVVAMNAPFSLSYDIAQGGKWEPIYVVKRVTKGWIYRAYPSGFKVYLDKPDGTVELIKEFDKGVIPKLREVAAVVRDESQARGYAISNDRYLTQRL 318
            LAFFGNW         S   + +  A P   KLVD  P LPKLYGGWFDNTLV+QASAAI AA++DG++TSEVLFPPLPNMEEREFGT LNM YN+AVA RL GPDNILR+QSVAYANVD+ASR+A K  KRTL+LTYD AVD +IIK+S +A + RI++ D++A   AND++ ALSPG GS W+KA+GL+T+APVVA+NAPFSL+YDIAQGGKWEPIYVVKRVTKGW++RAYP  FKVYLD PDG+VELIKEF  GV+PKLREV+++VR+ESQ RGYA  NDRYLTQRL
Sbjct:   43 LAFFGNWATQAQASTSSTGTSRSTLATPPPSKLVDKGPSLPKLYGGWFDNTLVNQASAAINAAVRDGVKTSEVLFPPLPNMEEREFGTELNMNYNKAVAARLKGPDNILRRQSVAYANVDIASRVAGKTGKRTLILTYDGAVDPNIIKISSKAMLTRINALDVEAASRANDIIFALSPGTGSQWSKASGLKTDAPVVAINAPFSLNYDIAQGGKWEPIYVVKRVTKGWVFRAYPHEFKVYLDTPDGSVELIKEFRGGVVPKLREVSSIVREESQRRGYAALNDRYLTQRL 332
The following BLAST results are available for this feature:
BLAST of NO17G01340.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24240.11.400e-11270.34hypothetical protein Naga_100020g68 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO17G01340NO17G01340Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO17G01340.1NO17G01340.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO17G01340.1.cds1NO17G01340.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO17G01340.1.cds2NO17G01340.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO17G01340.1.cds3NO17G01340.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO17G01340.1 ID=NO17G01340.1|Name=NO17G01340.1|organism=Nannochloropsis oceanica|type=mRNA|length=954bp
ATGCTCCAGAGCATTTTGGCGTGTTCACTTTTGTTAGTCGACGCATGCGG
CGGCCTTCCTGCCAAGACGACGTCGCGCGACCCACTGGCTTTCTTTGGCA
ACTGGGGAAAACCCTTTGTCCCCAAGGTCCCGAGTGCTGCGCCTGCTCCT
GCCGCTGCCGCTGCCCCCGCGAAGAAACTCGTCGATTATAGTCCTAGGCT
CCCAAAACTGTATGGGGGGTGGTTCGACAATACTCTCGTCGATCAAGCAT
CTGCAGCCATCACCGCGGCGTTGAAAGACGGCATTCAGACGTCCGAAGTG
CTCTTCCCCCCCTTGCCCAACATGGAAGAGCGCGAGTTCGGGACCAGTCT
AAACATGAAATACAACAGGGCCGTCGCCACTCGTTTGGGCGGCCCCGACA
ATATTTTGCGGAAGCAAAGCGTTGCTTATGCGAATGTTGACCTGGCCAGC
AGAATCGCCACCAAGCTCAGAAAACGCACCCTCCTCCTCACCTACGACAA
CGCTGTCGACTCAAGCATCATAAAGCTTAGCAAACAAGCCGAAATCATGC
GCATCAGTAGCGCTGATCTCAAAGCATGTATAACGGCCAATGATGTTTTG
CTCGCCCTTTCCCCTGGCGTCGGTTCGCATTGGACCAAAGCAGCGGGGCT
CCAAACCGAGGCGCCCGTGGTGGCCATGAATGCCCCCTTTTCCCTTTCTT
ACGATATCGCACAAGGTGGGAAATGGGAGCCGATTTATGTAGTCAAAAGA
GTGACGAAAGGATGGATTTATCGAGCTTACCCGTCTGGATTTAAGGTGTA
TTTAGACAAACCTGATGGAACGGTAGAGTTAATCAAGGAATTTGACAAGG
GGGTGATCCCCAAGCTGAGGGAAGTGGCGGCCGTGGTCCGCGACGAAAGT
CAAGCACGAGGATATGCCATTTCGAATGATCGGTACTTGACGCAGCGGTT
ATAA
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protein sequence of NO17G01340.1

>NO17G01340.1-protein ID=NO17G01340.1-protein|Name=NO17G01340.1|organism=Nannochloropsis oceanica|type=polypeptide|length=318bp
MLQSILACSLLLVDACGGLPAKTTSRDPLAFFGNWGKPFVPKVPSAAPAP
AAAAAPAKKLVDYSPRLPKLYGGWFDNTLVDQASAAITAALKDGIQTSEV
LFPPLPNMEEREFGTSLNMKYNRAVATRLGGPDNILRKQSVAYANVDLAS
RIATKLRKRTLLLTYDNAVDSSIIKLSKQAEIMRISSADLKACITANDVL
LALSPGVGSHWTKAAGLQTEAPVVAMNAPFSLSYDIAQGGKWEPIYVVKR
VTKGWIYRAYPSGFKVYLDKPDGTVELIKEFDKGVIPKLREVAAVVRDES
QARGYAISNDRYLTQRL*
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mRNA from alignment at chr17:413208..414385+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO17G01340.1 ID=NO17G01340.1|Name=NO17G01340.1|organism=Nannochloropsis oceanica|type=mRNA|length=1178bp|location=Sequence derived from alignment at chr17:413208..414385+ (Nannochloropsis oceanica)
ATGCTCCAGAGCATTTTGGCGTGTTCACTTTTGTTAGTCGACGCATGCGG
CGGCCTTCCTGCCAAGACGACGTCGCGCGACCCACTGGCTTTCTTTGGCA
ACTGGGGAAAACCCTTTGTCCCCAAGGTCCCGAGTGCTGCGCCTGCTCCT
GCCGCTGCCGCTGCCCCCGCGAAGAAACTCGTCGATTATAGTCCTAGGCT
CCCAAAACTGTATGGGGGGTGGTTCGACAATACTCTCGTCGATCAAGCAT
CTGCAGCCATCACCGCGGCGTTGAAAGACGGTACGTGATAATTGCTGAGC
ACTGAAATCTGGGGAAATTGCTGTCTGACCGGCCTTTCTTCCGCCCTTGT
CTTCTTATCCTCCATTTAACAGGCATTCAGACGTCCGAAGTGCTCTTCCC
CCCCTTGCCCAACATGGAAGAGCGCGAGTTCGGGACCAGTCTAAACAGTA
CGTAATGCATCTTTGCTTTTCCGCTTCGCAGTAGTGTGTATGAGTCCCAG
AGATGTACTGCTCTGCTACGTACAACCCTCTCCGTCTCTCACCGCGCATT
TCAACATCCGCCCTCCTTCGTCCCTTCAGTGAAATACAACAGGGCCGTCG
CCACTCGTTTGGGCGGCCCCGACAATATTTTGCGGAAGCAAAGCGTTGCT
TATGCGAATGTTGACCTGGCCAGCAGAATCGCCACCAAGCTCAGAAAACG
CACCCTCCTCCTCACCTACGACAACGCTGTCGACTCAAGCATCATAAAGC
TTAGCAAACAAGCCGAAATCATGCGCATCAGTAGCGCTGATCTCAAAGCA
TGTATAACGGCCAATGATGTTTTGCTCGCCCTTTCCCCTGGCGTCGGTTC
GCATTGGACCAAAGCAGCGGGGCTCCAAACCGAGGCGCCCGTGGTGGCCA
TGAATGCCCCCTTTTCCCTTTCTTACGATATCGCACAAGGTGGGAAATGG
GAGCCGATTTATGTAGTCAAAAGAGTGACGAAAGGATGGATTTATCGAGC
TTACCCGTCTGGATTTAAGGTGTATTTAGACAAACCTGATGGAACGGTAG
AGTTAATCAAGGAATTTGACAAGGGGGTGATCCCCAAGCTGAGGGAAGTG
GCGGCCGTGGTCCGCGACGAAAGTCAAGCACGAGGATATGCCATTTCGAA
TGATCGGTACTTGACGCAGCGGTTATAA
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Coding sequence (CDS) from alignment at chr17:413208..414385+

>NO17G01340.1 ID=NO17G01340.1|Name=NO17G01340.1|organism=Nannochloropsis oceanica|type=CDS|length=954bp|location=Sequence derived from alignment at chr17:413208..414385+ (Nannochloropsis oceanica)
ATGCTCCAGAGCATTTTGGCGTGTTCACTTTTGTTAGTCGACGCATGCGG
CGGCCTTCCTGCCAAGACGACGTCGCGCGACCCACTGGCTTTCTTTGGCA
ACTGGGGAAAACCCTTTGTCCCCAAGGTCCCGAGTGCTGCGCCTGCTCCT
GCCGCTGCCGCTGCCCCCGCGAAGAAACTCGTCGATTATAGTCCTAGGCT
CCCAAAACTGTATGGGGGGTGGTTCGACAATACTCTCGTCGATCAAGCAT
CTGCAGCCATCACCGCGGCGTTGAAAGACGGCATTCAGACGTCCGAAGTG
CTCTTCCCCCCCTTGCCCAACATGGAAGAGCGCGAGTTCGGGACCAGTCT
AAACATGAAATACAACAGGGCCGTCGCCACTCGTTTGGGCGGCCCCGACA
ATATTTTGCGGAAGCAAAGCGTTGCTTATGCGAATGTTGACCTGGCCAGC
AGAATCGCCACCAAGCTCAGAAAACGCACCCTCCTCCTCACCTACGACAA
CGCTGTCGACTCAAGCATCATAAAGCTTAGCAAACAAGCCGAAATCATGC
GCATCAGTAGCGCTGATCTCAAAGCATGTATAACGGCCAATGATGTTTTG
CTCGCCCTTTCCCCTGGCGTCGGTTCGCATTGGACCAAAGCAGCGGGGCT
CCAAACCGAGGCGCCCGTGGTGGCCATGAATGCCCCCTTTTCCCTTTCTT
ACGATATCGCACAAGGTGGGAAATGGGAGCCGATTTATGTAGTCAAAAGA
GTGACGAAAGGATGGATTTATCGAGCTTACCCGTCTGGATTTAAGGTGTA
TTTAGACAAACCTGATGGAACGGTAGAGTTAATCAAGGAATTTGACAAGG
GGGTGATCCCCAAGCTGAGGGAAGTGGCGGCCGTGGTCCGCGACGAAAGT
CAAGCACGAGGATATGCCATTTCGAATGATCGGTACTTGACGCAGCGGTT
ATAA
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Synonyms
Publications